Search FILER2
Search by genomic region, assay, TF/protein, cell type, tissue category, or other metadata.
Analyze your own data
View FILER data collections in Genome Browser
Explore FILER2 data by genomic feature and system category
Browse all FILER2 tracks by system category and genomic feature type.
Browse by collection
View all collectionsBrowse by genomic feature type
View all feature typesBrowse by tissue category
View all tissue typesBrowse by assay type
View all assay typesExplore functional genomics data across cell types, assays, and sources - without the wrangling
FILER2 lets users ask biological questions and immediately discover the most relevant functional genomics datasets.
FILER2 provides 100,000+ harmonized functional genomics and genome annotation tracks curated from 50+ data sources, enabling fast discovery, comparison, and reuse across 1,000+ cell types.
- Search biologically, not by file name
- Compare datasets across sources with consistent metadata
- Stay up-to-date with versioned, curated releases
- Download only what you need, when you need it
FILER Workflow
Getting Started
To get started, click on the Search to search by genomic coordinates or rsID, upload and analyze your own data (BED), or click Browse to explore FILER functional genomics datasets and annotations. See Download to download FILER datasets. See Deploy to install FILER on your local server or a cloud computing instance.
The Summary page provides an overview of FILER data contents by primary data sources, tissue and cell type categories, genomic feature type categories and experimental assays.
The About page provides details on FILER data source curation, data pre-processing and annotation.
Users can query by:
- Gene / genomic region
- Cell type
- Assay type
- Data source
- Genome build
If you use FILER in your research, please cite the FILER paper as well as the original publications producing the raw data and aknowledge the funding that they received (see Acknowledgments document).
News
| Oct 18, 2024 FILER v2 release: full set of FILER 2.0 tracks FILER v2.0 download |
Citation & data use
External data users may freely download, analyze and publish results based on any FILER data.
If you use FILER functional genomics database in your research, please cite:
Kuksa PP, Leung YY, Gangadharan P, Katanic Z, Kleidermacher L, Amlie-Wolf A, Lee C-Y, Qu L, Greenfest-Allen E, Valladares O, Wang L-S (2022) FILER: a framework for harmonizing and querying large-scale functional genomics knowledge. NAR Genomics Bioinformatics. https://doi.org/10.1093/nargab/lqab123
as well as the orginal publications producing the raw data and aknowledge the funding that they received (see also Data acknowledgements tab)
Funding
National Institute on Aging [U24-AG041689, U54-AG052427, U01-AG032984].