FILER Functional genomics repository

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Description of FILER metadata columns (XLS): FILER_v1_metadata_schema.xlsx.

For descriptions of the main output data types and data terms, please see data glossary, data terms, and references therein. For additional information, please also see data Summary page (‘Data description’ tab) and the About page.

identifier data_source file_name number_of_intervals bp_covered output_type genome_build cell_type biosample_type biosample_term_id tissue_category encode_experiment_id biological_replicate technical_replicate antibody assay file_format file_size release_date date_added_to_filer link_out_url raw_file_url data_category Genomic feature type track_description system_category life_stage track_name
NGABC2AHM7LVX5 Nasser_2021_ABC_enhancer_gene formatted_output_CD8-positive_alpha-beta_T_cell-ENCODE_EnhancerPredictionsFull.bed.gz 67,366 39,672,845 enhancer-gene interactions hg19 CD8+ alpha-beta T cell Primary cell CL:0000625 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,591,329 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=CD8-positive_alpha-beta_T_cell-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature112 Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene CD8+ alpha-beta T cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC2D7Z2KLW2 Nasser_2021_ABC_enhancer_gene formatted_output_foreskin_fibroblast-Roadmap_EnhancerPredictionsFull_lifted.bed.gz 61,114 30,331,667 enhancer-gene interactions hg38 Fibroblast Primary cell CL:0000057 Skin Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,101,710 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=foreskin_fibroblast-Roadmap;tissue_of_origin=Foreskin;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;so Integumentary Unknown Nasser_2021_ABC_enhancer_gene Fibroblast ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC2DHDROGGQ Nasser_2021_ABC_enhancer_gene formatted_output_T-cell-ENCODE_EnhancerPredictionsFull.bed.gz 65,794 50,938,169 enhancer-gene interactions hg19 T-cell Primary cell CL:0000084 Immune Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,386,893 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=T-cell-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11247;abc_celltype_id=T-cel Lymphatic Adult Nasser_2021_ABC_enhancer_gene T-cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Adult] [Chromatin interactions]
NGABC2MUSAHI4V Nasser_2021_ABC_enhancer_gene formatted_output_HT29_EnhancerPredictionsFull.bed.gz 61,866 35,221,681 enhancer-gene interactions hg19 HT-29 Cell line EFO:0001193 Digestive Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,026,783 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=HT29;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=HT29;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11247;abc_celltype_id=HT29;data_source Digestive Embryonic Nasser_2021_ABC_enhancer_gene HT-29 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Embryonic] [Chromatin interactions]
NGABC2N2U4ODLR Nasser_2021_ABC_enhancer_gene formatted_output_breast_epithelium-ENCODE_EnhancerPredictionsFull.bed.gz 69,670 26,876,477 enhancer-gene interactions hg19 Epithelium Tissue NCIT:C12710 Breast Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,682,958 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=breast_epithelium-ENCODE;tissue_of_origin=Breast;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;source_pubmed=22955616;source_doi=https://doi.org/10.103 Reproductive Unknown Nasser_2021_ABC_enhancer_gene Epithelium ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC2UV65LQMB Nasser_2021_ABC_enhancer_gene formatted_output_GM12878-Roadmap_EnhancerPredictionsFull_lifted.bed.gz 66,850 36,934,330 enhancer-gene interactions hg38 GM12878 Primary cell EFO:0002784 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,470,014 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=GM12878-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/10.1038/natur Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene GM12878 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC2WRQHIYFZ Nasser_2021_ABC_enhancer_gene formatted_output_stomach-Roadmap_EnhancerPredictionsFull.bed.gz 63,968 29,592,272 enhancer-gene interactions hg19 Stomach Primary tissue UBERON:0000945 Digestive Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,220,065 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=stomach-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;source_pubmed=25693563;source_doi=https://doi.org/10.1038/nature14248;abc_celltype_id=st Digestive Unknown Nasser_2021_ABC_enhancer_gene Stomach ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC3MDVOWIF2 Nasser_2021_ABC_enhancer_gene formatted_output_THP_pmaLPS_ATAC_0h_EnhancerPredictionsFull.bed.gz 61,870 18,343,905 enhancer-gene interactions hg19 THP-1 Cell line EFO:0001253 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,049,053 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=THP_pmaLPS_ATAC_0h;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Nasser_2021;source_pubmed=33828297;source_doi=https://doi.org/10.1038/s41586-021-03446-x;abc_ Cardiovascular Adult Nasser_2021_ABC_enhancer_gene THP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Adult] [Chromatin interactions]
NGABC3RK5CXFYT Nasser_2021_ABC_enhancer_gene formatted_output_H7_EnhancerPredictionsFull.bed.gz 58,556 29,116,574 enhancer-gene interactions hg19 H7-hESC Embryonic stem cell derived EFO:0005904 Stem Cell Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 3,830,394 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=H7;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=H7;source_pubmed=24412311;source_doi=10.1016/j.stem.2013.12.007;abc_celltype_id=H7;data_source_original=ENCOD Stem Cell Unknown Nasser_2021_ABC_enhancer_gene H7-hESC ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC3ZERRDFRI Nasser_2021_ABC_enhancer_gene formatted_output_CD14-positive_monocyte_treated_with_BG_1h-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz 65,820 21,446,224 enhancer-gene interactions hg38 CD14+ monocyte Primary cell CL:0001054 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,498,211 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=CD14-positive_monocyte_treated_with_BG_1h-Novakovic2016;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Novakovic 2016;biosample_type_note=done;source_pubmed=27 Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene CD14+ monocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC3ZGAHR6YE Nasser_2021_ABC_enhancer_gene formatted_output_CD8-positive_alpha-beta_T_cell-Corces2016_EnhancerPredictionsFull_lifted.bed.gz 68,002 23,549,195 enhancer-gene interactions hg38 CD8+ alpha-beta T cell Primary cell CL:0000625 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,621,591 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=CD8-positive_alpha-beta_T_cell-Corces2016;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Corces2016;biosample_type_note=needs revising;source_pubmed=27526324;s Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene CD8+ alpha-beta T cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC46FJBPY2P Nasser_2021_ABC_enhancer_gene formatted_output_THP_pmaLPS_ATAC_48h_EnhancerPredictionsFull_lifted.bed.gz 60,226 19,546,593 enhancer-gene interactions hg38 THP-1 Cell line EFO:0001253 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 3,962,892 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=THP_pmaLPS_ATAC_48h;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Nasser_2021;biosample_type_note=needs revising;source_pubmed=33828297;source_doi=https://doi Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene THP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC47T3XCDPI Nasser_2021_ABC_enhancer_gene formatted_output_T-cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz 65,766 50,919,318 enhancer-gene interactions hg38 T-cell Primary cell CL:0000084 Immune Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,420,630 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=T-cell-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11 Lymphatic Unknown Nasser_2021_ABC_enhancer_gene T-cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC4BJHFZXBW Nasser_2021_ABC_enhancer_gene formatted_output_CD14-positive_monocyte_treated_with_LPS_4h-Novakovic2016_EnhancerPredictionsFull.bed.gz 66,398 22,575,994 enhancer-gene interactions hg19 CD14+ monocyte Primary cell CL:0001054 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,531,314 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=CD14-positive_monocyte_treated_with_LPS_4h-Novakovic2016;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Novakovic 2016;source_pubmed=27863248;source_doi=10.101 Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene CD14+ monocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC4JLDWIUMG Nasser_2021_ABC_enhancer_gene formatted_output_Panc1-ENCODE_EnhancerPredictionsFull.bed.gz 61,276 32,009,676 enhancer-gene interactions hg19 Panc1 Cell line EFO:0002713 Digestive Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 3,979,776 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=Panc1-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11247;abc_celltype_id=Panc1- Digestive Adult Nasser_2021_ABC_enhancer_gene Panc1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Adult] [Chromatin interactions]
NGABC4NWNHCZEN Nasser_2021_ABC_enhancer_gene formatted_output_CD14-positive_monocyte_treated_with_BG_d6-Novakovic2016_EnhancerPredictionsFull.bed.gz 57,528 18,892,566 enhancer-gene interactions hg19 CD14+ monocyte Primary cell CL:0001054 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 3,837,999 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=CD14-positive_monocyte_treated_with_BG_d6-Novakovic2016;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Novakovic 2016;source_pubmed=27863248;source_doi=10.1016 Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene CD14+ monocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC4QERQ7GMU Nasser_2021_ABC_enhancer_gene formatted_output_body_of_pancreas-ENCODE_EnhancerPredictionsFull.bed.gz 65,380 45,585,187 enhancer-gene interactions hg19 Pancreas Tissue UBERON:0001264 Digestive Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,417,447 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=body_of_pancreas-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11247;abc_celltyp Digestive Adult Nasser_2021_ABC_enhancer_gene Pancreas ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Adult] [Chromatin interactions]
NGABC4R5RUBBTC Nasser_2021_ABC_enhancer_gene formatted_output_OCI-LY7-ENCODE_EnhancerPredictionsFull.bed.gz 65,310 47,769,317 enhancer-gene interactions hg19 OCI-LY7 Cell line EFO:0006711 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,325,193 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=OCI-LY7-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11247;abc_celltype_id=OCI- Cardiovascular Child Nasser_2021_ABC_enhancer_gene OCI-LY7 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Child] [Chromatin interactions]
NGABC4V5ACZFNG Nasser_2021_ABC_enhancer_gene formatted_output_THP_pmaLPS_ATAC_96h_EnhancerPredictionsFull_lifted.bed.gz 58,058 16,756,061 enhancer-gene interactions hg38 THP-1 Cell line EFO:0001253 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 3,829,324 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=THP_pmaLPS_ATAC_96h;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Nasser_2021;biosample_type_note=needs revising;source_pubmed=33828297;source_doi=https://doi Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene THP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC4VZDKEEVV Nasser_2021_ABC_enhancer_gene formatted_output_stomach_fetal-Roadmap_EnhancerPredictionsFull.bed.gz 63,236 43,074,002 enhancer-gene interactions hg19 Stomach Primary tissue UBERON:0000945 Digestive Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,254,066 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=stomach_fetal-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;source_pubmed=25693563;source_doi=https://doi.org/10.1038/nature14248;abc_celltype Digestive Fetal Nasser_2021_ABC_enhancer_gene Stomach ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Fetal] [Chromatin interactions]
NGABC55Q6FSSK6 Nasser_2021_ABC_enhancer_gene formatted_output_dendritic_cell_treated_with_Lipopolysaccharide_0_ng-mL_for_0_hour-Garber2017_EnhancerPredictionsFull_lifted.bed.gz 62,214 21,968,247 enhancer-gene interactions hg38 Dendritic cell In vitro differentiated cells CL:0000451 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,253,456 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=dendritic_cell_treated_with_Lipopolysaccharide_0_ng-mL_for_0_hour-Garber2017;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Garber 2017;biosample_type_note=nee Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene Dendritic cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC5M3Z2LMSX Nasser_2021_ABC_enhancer_gene formatted_output_megakaryocyte-erythroid_progenitor-Corces2016_EnhancerPredictionsFull_lifted.bed.gz 62,594 22,382,453 enhancer-gene interactions hg38 Megakaryocyte Primary cell CL:0000556 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,156,528 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=megakaryocyte-erythroid_progenitor-Corces2016;tissue_of_origin=Peripheral blood;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Corces 2016;biosample_type_note= Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene Megakaryocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC5S7PMOP6M Nasser_2021_ABC_enhancer_gene formatted_output_sigmoid_colon-ENCODE_EnhancerPredictionsFull_lifted.bed.gz 64,098 16,853,056 enhancer-gene interactions hg38 Sigmoid colon Tissue UBERON:0001159 Digestive Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,320,168 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=sigmoid_colon-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/n Digestive Unknown Nasser_2021_ABC_enhancer_gene Sigmoid colon ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC5SNKMSOVC Nasser_2021_ABC_enhancer_gene formatted_output_dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_1_hour-Garber2017_EnhancerPredictionsFull_lifted.bed.gz 63,126 21,828,782 enhancer-gene interactions hg38 Dendritic cell In vitro differentiated cells CL:0000451 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,332,980 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_1_hour-Garber2017;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Garber 2017;biosample_type_note=n Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene Dendritic cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC5U4PRCWYA Nasser_2021_ABC_enhancer_gene formatted_output_ovary-Roadmap_EnhancerPredictionsFull_lifted.bed.gz 62,940 39,079,770 enhancer-gene interactions hg38 Ovary Primary cell NCIT:C12404 Female Reproductive Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,214,325 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=ovary-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/10.1038/nature1 Reproductive Unknown Nasser_2021_ABC_enhancer_gene Ovary ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC5UEZNJUWI Nasser_2021_ABC_enhancer_gene formatted_output_MDA-MB-231_EnhancerPredictionsFull_lifted.bed.gz 61,544 37,828,989 enhancer-gene interactions hg38 MDA-MB-231 Cell line EFO:0001209 Breast Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,140,594 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=MDA-MB-231;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Ampuja2017;biosample_type_note=needs revising;source_pubmed=28077088;source_doi=10.1186/s12864-016-34 Reproductive Unknown Nasser_2021_ABC_enhancer_gene MDA-MB-231 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC5X4TPHUED Nasser_2021_ABC_enhancer_gene formatted_output_muscle_of_trunk_fetal-Roadmap_EnhancerPredictionsFull.bed.gz 59,122 40,134,899 enhancer-gene interactions hg19 Skeletal muscle tissue Tissue UBERON:0001134 Skeletal Muscle Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,044,136 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=muscle_of_trunk_fetal-Roadmap;derivation_info=Trunk;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;source_pubmed=25693563;source_doi=https://doi.org/10 Muscular Fetal Nasser_2021_ABC_enhancer_gene Skeletal muscle tissue ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Fetal] [Chromatin interactions]
NGABC5XI5U7RF3 Nasser_2021_ABC_enhancer_gene formatted_output_CD14-positive_monocyte_treated_with_LPS_1h-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz 66,500 23,549,235 enhancer-gene interactions hg38 CD14+ monocyte Primary cell CL:0001054 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,588,848 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=CD14-positive_monocyte_treated_with_LPS_1h-Novakovic2016;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Novakovic 2016;biosample_type_note=done;source_pubmed=2 Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene CD14+ monocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC5Y632664N Nasser_2021_ABC_enhancer_gene formatted_output_uterus-ENCODE_EnhancerPredictionsFull.bed.gz 60,536 38,419,021 enhancer-gene interactions hg19 Uterus Tissue UBERON:0000995 Female Reproductive Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 3,993,765 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=uterus-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11247;abc_celltype_id=uteru Reproductive Embryonic Nasser_2021_ABC_enhancer_gene Uterus ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Embryonic] [Chromatin interactions]
NGABC5YHYC42NK Nasser_2021_ABC_enhancer_gene formatted_output_adrenal_gland_fetal-ENCODE_EnhancerPredictionsFull_lifted.bed.gz 64,184 33,796,090 enhancer-gene interactions hg38 Adrenal gland Primary tissue UBERON:0002369 Endocrine Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,338,993 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=adrenal_gland_fetal-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10. Endocrine Unknown Nasser_2021_ABC_enhancer_gene Adrenal gland ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC5ZJC7JSIE Nasser_2021_ABC_enhancer_gene formatted_output_small_intestine_fetal-Roadmap_EnhancerPredictionsFull_lifted.bed.gz 68,334 36,733,911 enhancer-gene interactions hg38 Small intestine Primary tissue UBERON:0002108 Digestive Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,626,092 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=small_intestine_fetal-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org Digestive Unknown Nasser_2021_ABC_enhancer_gene Small intestine ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC65BXQRPCT Nasser_2021_ABC_enhancer_gene formatted_output_fibroblast_of_dermis-Roadmap_EnhancerPredictionsFull.bed.gz 55,788 28,649,331 enhancer-gene interactions hg19 Fibroblast Primary cell CL:0000057 Skin Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 3,707,040 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=fibroblast_of_dermis-Roadmap;tissue_of_origin=Dermis;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;source_pubmed=25693563;source_doi=https://doi.org/1 Integumentary Fetal Nasser_2021_ABC_enhancer_gene Fibroblast ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Fetal] [Chromatin interactions]
NGABC6DYSG7EY5 Nasser_2021_ABC_enhancer_gene formatted_output_THP_pmaLPS_ATAC_24h_EnhancerPredictionsFull_lifted.bed.gz 59,792 17,221,194 enhancer-gene interactions hg38 THP-1 Cell line EFO:0001253 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 3,943,809 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=THP_pmaLPS_ATAC_24h;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Nasser_2021;biosample_type_note=needs revising;source_pubmed=33828297;source_doi=https://doi Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene THP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC6MGI2FXQQ Nasser_2021_ABC_enhancer_gene formatted_output_HeLa-S3-Roadmap_EnhancerPredictionsFull_lifted.bed.gz 58,858 27,484,223 enhancer-gene interactions hg38 HeLa-S3 Primary cell EFO:0002791 Female Reproductive Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 3,879,035 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=HeLa-S3-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/10.1038/natur Reproductive Unknown Nasser_2021_ABC_enhancer_gene HeLa-S3 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC6SSL6GKJQ Nasser_2021_ABC_enhancer_gene formatted_output_liver-ENCODE_EnhancerPredictionsFull.bed.gz 68,160 26,052,956 enhancer-gene interactions hg19 Liver Tissue UBERON:0002107 Liver Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,503,847 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=liver-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11247;abc_celltype_id=liver- Digestive Adult Nasser_2021_ABC_enhancer_gene Liver ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Adult] [Chromatin interactions]
NGABC6YA7QVYND Nasser_2021_ABC_enhancer_gene formatted_output_astrocyte-ENCODE_EnhancerPredictionsFull.bed.gz 54,622 24,499,262 enhancer-gene interactions hg19 Astrocyte Primary cell CL:0000127 Brain Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 3,605,663 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=astrocyte-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11247;abc_celltype_id=as Nervous Newborn Nasser_2021_ABC_enhancer_gene Astrocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Newborn] [Chromatin interactions]
NGABC72ZUP3MRO Nasser_2021_ABC_enhancer_gene formatted_output_pancreas-Roadmap_EnhancerPredictionsFull.bed.gz 65,450 32,934,629 enhancer-gene interactions hg19 Pancreas Primary tissue UBERON:0001264 Digestive Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,336,448 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=pancreas-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;source_pubmed=25693563;source_doi=https://doi.org/10.1038/nature14248;abc_celltype_id=p Digestive Unknown Nasser_2021_ABC_enhancer_gene Pancreas ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC7AG4LE4G3 Nasser_2021_ABC_enhancer_gene formatted_output_dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_1_hour-Garber2017_EnhancerPredictionsFull.bed.gz 63,128 21,829,266 enhancer-gene interactions hg19 Dendritic cell In vitro differentiated cells CL:0000451 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,295,117 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_1_hour-Garber2017;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Garber 2017;source_pubmed=2295561 Cardiovascular Adult Nasser_2021_ABC_enhancer_gene Dendritic cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Adult] [Chromatin interactions]
NGABC7IYWZFRWP Nasser_2021_ABC_enhancer_gene formatted_output_adipose_tissue-ENCODE_EnhancerPredictionsFull.bed.gz 61,392 27,080,651 enhancer-gene interactions hg19 Adipose Tissue NCIT:C12472 Adipose Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,120,454 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=adipose_tissue-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11247;abc_celltype_ Integumentary Adult Nasser_2021_ABC_enhancer_gene Adipose ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Adult] [Chromatin interactions]
NGABC7KG5FU3CE Nasser_2021_ABC_enhancer_gene formatted_output_natural_killer_cell-Corces2016_EnhancerPredictionsFull.bed.gz 65,740 23,331,904 enhancer-gene interactions hg19 Natural killer cell Primary cell CL:0000623 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,377,071 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=natural_killer_cell-Corces2016;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Corces 2016;source_pubmed=27526324;source_doi=https://doi.org/10.1038/ng.3646;abc Cardiovascular Adult Nasser_2021_ABC_enhancer_gene Natural killer cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Adult] [Chromatin interactions]
NGABC7NB3RLAWU Nasser_2021_ABC_enhancer_gene formatted_output_THP1_LPS_4hr-Engreitz_EnhancerPredictionsFull.bed.gz 62,600 18,010,219 enhancer-gene interactions hg19 THP-1 Cell line EFO:0001253 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,109,234 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=THP1_LPS_4hr-Engreitz;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Engreitz;source_pubmed=33828297;source_doi=https://doi.org/10.1038/s41586-021-03446-x;abc_ Cardiovascular Child Nasser_2021_ABC_enhancer_gene THP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Child] [Chromatin interactions]
NGABC7NIVJ7TAY Nasser_2021_ABC_enhancer_gene formatted_output_fibroblast_of_arm-ENCODE_EnhancerPredictionsFull.bed.gz 60,718 38,559,347 enhancer-gene interactions hg19 Fibroblast Primary cell CL:0000057 Skin Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,051,759 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=fibroblast_of_arm-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11247;abc_cellty Integumentary Fetal Nasser_2021_ABC_enhancer_gene Fibroblast ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Fetal] [Chromatin interactions]
NGABC7O435CTJM Nasser_2021_ABC_enhancer_gene formatted_output_BJAB_anti-IgM_anti-CD40_4hr-Engreitz_EnhancerPredictionsFull_lifted.bed.gz 55,468 16,622,715 enhancer-gene interactions hg38 BJAB Cell line EFO:0002815 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 3,691,218 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=BJAB_anti-IgM_anti-CD40_4hr-Engreitz;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Engreitz;biosample_type_note=done;source_pubmed=33828297;source_doi=https:/ Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene BJAB ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABC7S2XE3PH2 Nasser_2021_ABC_enhancer_gene formatted_output_H1-hESC-Roadmap_EnhancerPredictionsFull.bed.gz 59,580 31,765,034 enhancer-gene interactions hg19 H1-hESC Primary cell EFO:0003042 Stem Cell Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 3,919,940 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=H1-hESC-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;source_pubmed=25693563;source_doi=https://doi.org/10.1038/nature14248;abc_celltype_id=H1 Stem Cell Adult Nasser_2021_ABC_enhancer_gene H1-hESC ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Adult] [Chromatin interactions]
NGABCA2PM3HCM7 Nasser_2021_ABC_enhancer_gene formatted_output_body_of_pancreas-ENCODE_EnhancerPredictionsFull_lifted.bed.gz 65,348 45,566,907 enhancer-gene interactions hg38 Pancreas Tissue UBERON:0001264 Digestive Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,459,275 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=body_of_pancreas-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.103 Digestive Unknown Nasser_2021_ABC_enhancer_gene Pancreas ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCA32L575OE Nasser_2021_ABC_enhancer_gene formatted_output_HCT116-ENCODE_EnhancerPredictionsFull_lifted.bed.gz 65,424 33,619,250 enhancer-gene interactions hg38 HCT116 Cell line EFO:0002824 Digestive Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,348,604 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=HCT116-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11 Digestive Unknown Nasser_2021_ABC_enhancer_gene HCT116 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCA7V2JFOTF Nasser_2021_ABC_enhancer_gene formatted_output_liver-ENCODE_EnhancerPredictionsFull_lifted.bed.gz 68,160 26,052,863 enhancer-gene interactions hg38 Liver Tissue UBERON:0002107 Liver Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,550,327 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=liver-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature112 Digestive Unknown Nasser_2021_ABC_enhancer_gene Liver ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCAEEBKNW7R Nasser_2021_ABC_enhancer_gene formatted_output_THP1_LPS_4hr-Engreitz_EnhancerPredictionsFull_lifted.bed.gz 62,594 18,008,686 enhancer-gene interactions hg38 THP-1 Cell line EFO:0001253 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,162,943 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=THP1_LPS_4hr-Engreitz;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Engreitz;biosample_type_note=needs revising;source_pubmed=33828297;source_doi=https://doi. Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene THP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCAHEGI4OFQ Nasser_2021_ABC_enhancer_gene formatted_output_mammary_epithelial_cell-Roadmap_EnhancerPredictionsFull.bed.gz 59,028 29,774,539 enhancer-gene interactions hg19 Epithelial cell Primary cell CL:0000066 Breast Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 3,933,809 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=mammary_epithelial_cell-Roadmap;tissue_of_origin=Mammary;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;source_pubmed=25693563;source_doi=https://doi.o Reproductive Adult Nasser_2021_ABC_enhancer_gene Epithelial cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Adult] [Chromatin interactions]
NGABCAQM6DQD6T Nasser_2021_ABC_enhancer_gene formatted_output_U937-Engreitz_EnhancerPredictionsFull.bed.gz 61,388 16,997,103 enhancer-gene interactions hg19 U-937 Cell line EFO:0001257 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,023,621 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=U937-Engreitz;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Engreitz;source_pubmed=33828297;source_doi=https://doi.org/10.1038/s41586-021-03446-x;abc_celltype Cardiovascular Adult Nasser_2021_ABC_enhancer_gene U-937 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Adult] [Chromatin interactions]
NGABCATGGXLZPY Nasser_2021_ABC_enhancer_gene formatted_output_brite_adipose-Loft2014_EnhancerPredictionsFull.bed.gz 62,548 27,478,333 enhancer-gene interactions hg19 Adipose In vitro differentiated cells NCIT:C12472 Adipose Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,091,514 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=brite_adipose-Loft2014;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Loft 2014;source_pubmed=25504365;source_doi=https://doi.org/10.1101/gad.250829.114;abc_ce Integumentary Unknown Nasser_2021_ABC_enhancer_gene Adipose ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCAVK6V6OW4 Nasser_2021_ABC_enhancer_gene formatted_output_NCCIT_EnhancerPredictionsFull_lifted.bed.gz 55,100 15,548,209 enhancer-gene interactions hg38 NCCIT Cell line Not available Male Reproductive Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 3,611,442 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=NCCIT;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=NCCIT;biosample_type_note=needs revising;source_pubmed=31784727;source_doi=10.1038/s41588-019-0538-0;abc_c Reproductive Unknown Nasser_2021_ABC_enhancer_gene NCCIT ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCAWXGO5T24 Nasser_2021_ABC_enhancer_gene formatted_output_MM.1S-ENCODE_EnhancerPredictionsFull_lifted.bed.gz 62,214 40,102,453 enhancer-gene interactions hg38 MM.1S Cell line EFO:0005724 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,172,414 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=MM.1S-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature112 Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene MM.1S ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCAXICEYZLR Nasser_2021_ABC_enhancer_gene formatted_output_THP-1_macrophage-VanBortle2017_EnhancerPredictionsFull_lifted.bed.gz 52,846 14,972,467 enhancer-gene interactions hg38 Macrophage Cell line CL:0000235 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 3,475,010 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=THP-1_macrophage-VanBortle2017;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=VanBortle 2017;biosample_type_note=needs revising;source_pubmed=28931413;source_d Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene Macrophage ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCAYLX6P3HO Nasser_2021_ABC_enhancer_gene formatted_output_THP_pmaLPS_ATAC_0h_EnhancerPredictionsFull_lifted.bed.gz 61,862 18,341,705 enhancer-gene interactions hg38 THP-1 Cell line EFO:0001253 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,088,811 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=THP_pmaLPS_ATAC_0h;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Nasser_2021;biosample_type_note=needs revising;source_pubmed=33828297;source_doi=https://doi. Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene THP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCAZZ67IZ6U Nasser_2021_ABC_enhancer_gene formatted_output_spleen-ENCODE_EnhancerPredictionsFull_lifted.bed.gz 62,804 22,628,049 enhancer-gene interactions hg38 Spleen Tissue UBERON:0002106 Immune Organ Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,180,073 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=spleen-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11 Lymphatic Unknown Nasser_2021_ABC_enhancer_gene Spleen ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCB6DDJ2HDH Nasser_2021_ABC_enhancer_gene formatted_output_psoas_muscle-Roadmap_EnhancerPredictionsFull_lifted.bed.gz 61,950 34,604,575 enhancer-gene interactions hg38 Psoas muscle Primary tissue UBERON:0008450 Skeletal Muscle Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,171,684 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=psoas_muscle-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/10.1038/ Muscular Unknown Nasser_2021_ABC_enhancer_gene Psoas muscle ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCB6TDPLRO5 Nasser_2021_ABC_enhancer_gene formatted_output_THP_pmaLPS_ATAC_48h_EnhancerPredictionsFull.bed.gz 60,228 19,547,125 enhancer-gene interactions hg19 THP-1 Cell line EFO:0001253 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 3,923,359 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=THP_pmaLPS_ATAC_48h;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Nasser_2021;source_pubmed=33828297;source_doi=https://doi.org/10.1038/s41586-021-03446-x;abc Cardiovascular Child Nasser_2021_ABC_enhancer_gene THP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Child] [Chromatin interactions]
NGABCBFPKD2UDP Nasser_2021_ABC_enhancer_gene formatted_output_CD14-positive_monocyte_treated_with_LPS_d1-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz 65,180 21,893,271 enhancer-gene interactions hg38 CD14+ monocyte Primary cell CL:0001054 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,476,328 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=CD14-positive_monocyte_treated_with_LPS_d1-Novakovic2016;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Novakovic 2016;biosample_type_note=done;source_pubmed=2 Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene CD14+ monocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCBH2ZMGXTL Nasser_2021_ABC_enhancer_gene formatted_output_CD14-positive_monocyte-Novakovic2016_EnhancerPredictionsFull.bed.gz 64,904 21,168,454 enhancer-gene interactions hg19 CD14+ monocyte Primary cell CL:0001054 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,357,994 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=CD14-positive_monocyte-Novakovic2016;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Novakovic 2016;source_pubmed=27863248;source_doi=10.1016/j.cell.2016.09.034 Cardiovascular Adult Nasser_2021_ABC_enhancer_gene CD14+ monocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Adult] [Chromatin interactions]
NGABCBJ2TE3UFB Nasser_2021_ABC_enhancer_gene formatted_output_dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_6_hour-Garber2017_EnhancerPredictionsFull.bed.gz 65,486 25,573,749 enhancer-gene interactions hg19 Dendritic cell In vitro differentiated cells CL:0000451 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,495,815 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_6_hour-Garber2017;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Garber 2017;source_pubmed=2295561 Cardiovascular Adult Nasser_2021_ABC_enhancer_gene Dendritic cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Adult] [Chromatin interactions]
NGABCBNEECKIDR Nasser_2021_ABC_enhancer_gene formatted_output_H1_Derived_Mesenchymal_Stem_Cells-Roadmap_EnhancerPredictionsFull.bed.gz 58,270 31,777,118 enhancer-gene interactions hg19 Mesenchymal stem cell Induced pluripotent stem cell line CL:0000134 Stem Cell Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 3,967,025 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=H1_Derived_Mesenchymal_Stem_Cells-Roadmap;derivation_info=H1 derived;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;source_pubmed=25693563;source_doi=h Stem Cell Adult Nasser_2021_ABC_enhancer_gene Mesenchymal stem cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Adult] [Chromatin interactions]
NGABCBXGQE472R Nasser_2021_ABC_enhancer_gene formatted_output_H1_Derived_Neuronal_Progenitor_Cultured_Cells-Roadmap_EnhancerPredictionsFull_lifted.bed.gz 57,924 38,142,527 enhancer-gene interactions hg38 Neural progenitor cell Primary cell CL:0011020 Brain Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,023,767 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=H1_Derived_Neuronal_Progenitor_Cultured_Cells-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;so Nervous Unknown Nasser_2021_ABC_enhancer_gene Neural progenitor cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCBYMTNVP6S Nasser_2021_ABC_enhancer_gene formatted_output_endothelial_cell_of_umbilical_vein-Roadmap_EnhancerPredictionsFull_lifted.bed.gz 61,706 35,731,872 enhancer-gene interactions hg38 Endothelial cell Primary cell CL:0000115 Umbilical Cord Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,177,121 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=endothelial_cell_of_umbilical_vein-Roadmap;tissue_of_origin=Umbilical vein;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;sour Embryo Unknown Nasser_2021_ABC_enhancer_gene Endothelial cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCBZI7WN5MP Nasser_2021_ABC_enhancer_gene formatted_output_HAP1_EnhancerPredictionsFull.bed.gz 57,890 32,237,236 enhancer-gene interactions hg19 HAP-1 Cell line EFO:0007598 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 3,718,089 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=HAP1;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=HAP1;source_pubmed=30153076;source_doi=10.1080/15548627.2018.1509608;abc_celltype_id=HAP1;data_source_origi Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene HAP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCCAHAZYR72 Nasser_2021_ABC_enhancer_gene formatted_output_muscle_of_leg_fetal-Roadmap_EnhancerPredictionsFull_lifted.bed.gz 58,436 42,739,262 enhancer-gene interactions hg38 Skeletal muscle tissue Primary cell UBERON:0001134 Skeletal Muscle Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,037,408 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=muscle_of_leg_fetal-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/1 Muscular Unknown Nasser_2021_ABC_enhancer_gene Skeletal muscle tissue ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCCBKIQXW43 Nasser_2021_ABC_enhancer_gene formatted_output_THP_pmaLPS_ATAC_1h_EnhancerPredictionsFull.bed.gz 62,482 17,984,603 enhancer-gene interactions hg19 THP-1 Cell line EFO:0001253 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,076,799 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=THP_pmaLPS_ATAC_1h;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Nasser_2021;source_pubmed=33828297;source_doi=https://doi.org/10.1038/s41586-021-03446-x;abc_ Cardiovascular Child Nasser_2021_ABC_enhancer_gene THP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Child] [Chromatin interactions]
NGABCCBLEWKWC5 Nasser_2021_ABC_enhancer_gene formatted_output_MCF-7-ENCODE_EnhancerPredictionsFull.bed.gz 55,888 26,827,340 enhancer-gene interactions hg19 MCF-7 Cell line EFO:0001203 Breast Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 3,634,534 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=MCF-7-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11247;abc_celltype_id=MCF-7- Reproductive Newborn Nasser_2021_ABC_enhancer_gene MCF-7 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Newborn] [Chromatin interactions]
NGABCCH23HCQWY Nasser_2021_ABC_enhancer_gene formatted_output_heart_ventricle-ENCODE_EnhancerPredictionsFull_lifted.bed.gz 64,742 20,852,027 enhancer-gene interactions hg38 Ventricle Tissue UBERON:0002080 Heart Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,342,671 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=heart_ventricle-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038 Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene Ventricle ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCCLRUM7SMC Nasser_2021_ABC_enhancer_gene formatted_output_U937-Engreitz_EnhancerPredictionsFull_lifted.bed.gz 61,386 16,996,505 enhancer-gene interactions hg38 U-937 Cell line EFO:0001257 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,051,560 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=U937-Engreitz;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Engreitz;biosample_type_note=needs revising;source_pubmed=33828297;source_doi=https://doi.org/10.1 Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene U-937 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCCPSAF33TL Nasser_2021_ABC_enhancer_gene formatted_output_coronary_artery_smooth_muscle_cell-Miller2016_EnhancerPredictionsFull_lifted.bed.gz 53,438 17,820,389 enhancer-gene interactions hg38 Smooth muscle cell Primary cell CL:0000192 Blood Vessel Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 3,600,428 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=coronary_artery_smooth_muscle_cell-Miller2016;tissue_of_origin=Coronary artery;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Miller 2016;biosample_type_note=n Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene Smooth muscle cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCCTJ6NR3GG Nasser_2021_ABC_enhancer_gene formatted_output_breast_epithelium-ENCODE_EnhancerPredictionsFull_lifted.bed.gz 69,658 26,870,710 enhancer-gene interactions hg38 Epithelium Tissue NCIT:C12710 Breast Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,715,036 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=breast_epithelium-ENCODE;tissue_of_origin=Breast;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_d Reproductive Unknown Nasser_2021_ABC_enhancer_gene Epithelium ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCCY2IQQAM7 Nasser_2021_ABC_enhancer_gene formatted_output_A549_treated_with_ethanol_0.02_percent_for_1_hour-Roadmap_EnhancerPredictionsFull.bed.gz 62,628 33,512,841 enhancer-gene interactions hg19 A549 Primary cell EFO:0001086 Lung Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,213,501 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=A549_treated_with_ethanol_0.02_percent_for_1_hour-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;source_pubmed=25693563;source_doi=https://doi. Respiratory Adult Nasser_2021_ABC_enhancer_gene A549 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Adult] [Chromatin interactions]
NGABCDEZH6BU5U Nasser_2021_ABC_enhancer_gene formatted_output_CD8-positive_alpha-beta_T_cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz 67,336 39,653,730 enhancer-gene interactions hg38 CD8+ alpha-beta T cell Primary cell CL:0000625 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,635,215 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=CD8-positive_alpha-beta_T_cell-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https:// Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene CD8+ alpha-beta T cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCDHGBNARTH Nasser_2021_ABC_enhancer_gene formatted_output_dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_2_hour-Garber2017_EnhancerPredictionsFull_lifted.bed.gz 61,926 24,484,351 enhancer-gene interactions hg38 Dendritic cell In vitro differentiated cells CL:0000451 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,263,666 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_2_hour-Garber2017;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Garber 2017;biosample_type_note=n Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene Dendritic cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCDLD3UYOA3 Nasser_2021_ABC_enhancer_gene formatted_output_CD14-positive_monocyte_treated_with_LPS_d6-Novakovic2016_EnhancerPredictionsFull.bed.gz 66,848 21,654,227 enhancer-gene interactions hg19 CD14+ monocyte Primary cell CL:0001054 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,555,057 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=CD14-positive_monocyte_treated_with_LPS_d6-Novakovic2016;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Novakovic 2016;source_pubmed=27863248;source_doi=10.101 Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene CD14+ monocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCDM32NKH7V Nasser_2021_ABC_enhancer_gene formatted_output_THP_pmaLPS_ATAC_1h_EnhancerPredictionsFull_lifted.bed.gz 62,470 17,981,159 enhancer-gene interactions hg38 THP-1 Cell line EFO:0001253 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,129,114 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=THP_pmaLPS_ATAC_1h;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Nasser_2021;biosample_type_note=needs revising;source_pubmed=33828297;source_doi=https://doi. Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene THP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCDPBM2LDX5 Nasser_2021_ABC_enhancer_gene formatted_output_LNCAP_EnhancerPredictionsFull.bed.gz 56,654 25,724,895 enhancer-gene interactions hg19 LNCAP Cell line EFO:0002071 Male Reproductive Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 3,671,651 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=LNCAP;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=LNCAP;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11247;abc_celltype_id=LNCAP;data_sou Reproductive Child Nasser_2021_ABC_enhancer_gene LNCAP ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Child] [Chromatin interactions]
NGABCDSQHKFF2O Nasser_2021_ABC_enhancer_gene formatted_output_heart_ventricle-ENCODE_EnhancerPredictionsFull.bed.gz 64,760 20,862,659 enhancer-gene interactions hg19 Ventricle Tissue UBERON:0002080 Heart Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,317,620 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=heart_ventricle-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11247;abc_celltype Cardiovascular Adult Nasser_2021_ABC_enhancer_gene Ventricle ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Adult] [Chromatin interactions]
NGABCE26B777UK Nasser_2021_ABC_enhancer_gene formatted_output_white_adipose-Loft2014_EnhancerPredictionsFull.bed.gz 63,820 28,173,238 enhancer-gene interactions hg19 Adipose In vitro differentiated cells NCIT:C12472 Adipose Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,185,990 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=white_adipose-Loft2014;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Loft2014;source_pubmed=25504365;source_doi=https://doi.org/10.1101/gad.250829.114;abc_cel Integumentary Unknown Nasser_2021_ABC_enhancer_gene Adipose ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCE5IL3WPQV Nasser_2021_ABC_enhancer_gene formatted_output_THP1-Engreitz_EnhancerPredictionsFull_lifted.bed.gz 61,446 17,649,088 enhancer-gene interactions hg38 THP-1 Cell line EFO:0001253 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,076,351 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=THP1-Engreitz;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Engreitz;biosample_type_note=needs revising;source_pubmed=33828297;source_doi=https://doi.org/10.1 Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene THP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCE6ULAM5MW Nasser_2021_ABC_enhancer_gene formatted_output_dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_6_hour-Garber2017_EnhancerPredictionsFull_lifted.bed.gz 65,486 25,573,644 enhancer-gene interactions hg38 Dendritic cell In vitro differentiated cells CL:0000451 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,529,836 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_6_hour-Garber2017;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Garber 2017;biosample_type_note=n Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene Dendritic cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCEAM3Q2AAX Nasser_2021_ABC_enhancer_gene formatted_output_dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_2_hour-Garber2017_EnhancerPredictionsFull.bed.gz 61,926 24,484,469 enhancer-gene interactions hg19 Dendritic cell In vitro differentiated cells CL:0000451 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,220,650 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_2_hour-Garber2017;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Garber 2017;source_pubmed=2295561 Cardiovascular Adult Nasser_2021_ABC_enhancer_gene Dendritic cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Adult] [Chromatin interactions]
NGABCEDPZWDCFM Nasser_2021_ABC_enhancer_gene formatted_output_muscle_of_leg_fetal-Roadmap_EnhancerPredictionsFull.bed.gz 58,446 42,738,828 enhancer-gene interactions hg19 Skeletal muscle tissue Tissue UBERON:0001134 Skeletal Muscle Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,006,648 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=muscle_of_leg_fetal-Roadmap;derivation_info=Leg;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;source_pubmed=25693563;source_doi=https://doi.org/10.103 Muscular Fetal Nasser_2021_ABC_enhancer_gene Skeletal muscle tissue ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Fetal] [Chromatin interactions]
NGABCEIGLSSZEO Nasser_2021_ABC_enhancer_gene formatted_output_keratinocyte-Roadmap_EnhancerPredictionsFull.bed.gz 62,504 30,681,037 enhancer-gene interactions hg19 Keratinocyte Primary cell CL:0000312 Skin Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,123,982 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=keratinocyte-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;source_pubmed=25693563;source_doi=https://doi.org/10.1038/nature14248;abc_celltype_ Integumentary Newborn Nasser_2021_ABC_enhancer_gene Keratinocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Newborn] [Chromatin interactions]
NGABCERACLDPGT Nasser_2021_ABC_enhancer_gene formatted_output_ovary-Roadmap_EnhancerPredictionsFull.bed.gz 62,976 39,098,559 enhancer-gene interactions hg19 Ovary Primary cell NCIT:C12404 Female Reproductive Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,180,443 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=ovary-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;source_pubmed=25693563;source_doi=https://doi.org/10.1038/nature14248;abc_celltype_id=ovar Reproductive Adult Nasser_2021_ABC_enhancer_gene Ovary ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Adult] [Chromatin interactions]
NGABCFCZ2FFU7V Nasser_2021_ABC_enhancer_gene formatted_output_myotube_originated_from_skeletal_muscle_myoblast-Roadmap_EnhancerPredictionsFull.bed.gz 60,128 34,750,072 enhancer-gene interactions hg19 Myotube Primary cell CL:0002372 Skeletal Muscle Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,100,888 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=myotube_originated_from_skeletal_muscle_myoblast-Roadmap;derivation_info=HSMM cell derived;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;source_pubmed Muscular Adult Nasser_2021_ABC_enhancer_gene Myotube ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Adult] [Chromatin interactions]
NGABCFEBGQ5DOA Nasser_2021_ABC_enhancer_gene formatted_output_CD3-positive_T_cell-Roadmap_EnhancerPredictionsFull_lifted.bed.gz 67,200 42,383,663 enhancer-gene interactions hg38 T-cell Primary cell CL:0000084 Immune Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,538,164 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=CD3-positive_T_cell-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/1 Lymphatic Unknown Nasser_2021_ABC_enhancer_gene T-cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCFGYRDMCWJ Nasser_2021_ABC_enhancer_gene formatted_output_H1_Derived_Mesenchymal_Stem_Cells-Roadmap_EnhancerPredictionsFull_lifted.bed.gz 58,252 31,764,724 enhancer-gene interactions hg38 Mesenchymal stem cell Primary cell CL:0000134 Stem Cell Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 3,995,180 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=H1_Derived_Mesenchymal_Stem_Cells-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=htt Stem Cell Unknown Nasser_2021_ABC_enhancer_gene Mesenchymal stem cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCFKHSTLBS7 Nasser_2021_ABC_enhancer_gene formatted_output_CD14-positive_monocyte_treated_with_RPMI_d1-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz 66,262 23,090,839 enhancer-gene interactions hg38 CD14+ monocyte Primary cell CL:0001054 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,568,928 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=CD14-positive_monocyte_treated_with_RPMI_d1-Novakovic2016;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Novakovic 2016;biosample_type_note=done;source_pubmed= Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene CD14+ monocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCFRYNKNJH5 Nasser_2021_ABC_enhancer_gene formatted_output_THP_pmaLPS_ATAC_96h_EnhancerPredictionsFull.bed.gz 58,064 16,757,588 enhancer-gene interactions hg19 THP-1 Cell line EFO:0001253 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 3,794,240 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=THP_pmaLPS_ATAC_96h;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Nasser_2021;source_pubmed=33828297;source_doi=https://doi.org/10.1038/s41586-021-03446-x;abc Cardiovascular Child Nasser_2021_ABC_enhancer_gene THP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Child] [Chromatin interactions]
NGABCFY6JXOITY Nasser_2021_ABC_enhancer_gene formatted_output_Panc1-ENCODE_EnhancerPredictionsFull_lifted.bed.gz 61,248 31,998,380 enhancer-gene interactions hg38 Panc1 Cell line EFO:0002713 Digestive Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,026,605 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=Panc1-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature112 Digestive Unknown Nasser_2021_ABC_enhancer_gene Panc1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCFZDSXJRPO Nasser_2021_ABC_enhancer_gene formatted_output_CD14-positive_monocyte_treated_with_LPS_4h-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz 66,382 22,569,485 enhancer-gene interactions hg38 CD14+ monocyte Primary cell CL:0001054 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,579,146 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=CD14-positive_monocyte_treated_with_LPS_4h-Novakovic2016;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Novakovic 2016;biosample_type_note=done;source_pubmed=2 Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene CD14+ monocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCG5OE2PZQ3 Nasser_2021_ABC_enhancer_gene formatted_output_psoas_muscle-Roadmap_EnhancerPredictionsFull.bed.gz 61,980 34,620,925 enhancer-gene interactions hg19 Psoas muscle Primary tissue UBERON:0008450 Skeletal Muscle Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,131,194 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=psoas_muscle-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;source_pubmed=25693563;source_doi=https://doi.org/10.1038/nature14248;abc_celltype_ Muscular Unknown Nasser_2021_ABC_enhancer_gene Psoas muscle ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCG7LYGXPWN Nasser_2021_ABC_enhancer_gene formatted_output_sigmoid_colon-ENCODE_EnhancerPredictionsFull.bed.gz 64,108 16,855,477 enhancer-gene interactions hg19 Sigmoid colon Tissue UBERON:0001159 Digestive Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,286,391 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=sigmoid_colon-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11247;abc_celltype_i Digestive Adult Nasser_2021_ABC_enhancer_gene Sigmoid colon ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Adult] [Chromatin interactions]
NGABCGAA5BE7FV Nasser_2021_ABC_enhancer_gene formatted_output_erythroblast-Corces2016_EnhancerPredictionsFull_lifted.bed.gz 68,796 22,631,560 enhancer-gene interactions hg38 Erythroblast Primary cell CL:0000765 Blood Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,575,847 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=erythroblast-Corces2016;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Corces2016;biosample_type_note=needs revising;source_pubmed=27526324;source_doi=https:// Cardiovascular Unknown Nasser_2021_ABC_enhancer_gene Erythroblast ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCGLTTJBOZ6 Nasser_2021_ABC_enhancer_gene formatted_output_thymus_fetal-Roadmap_EnhancerPredictionsFull_lifted.bed.gz 63,062 40,836,408 enhancer-gene interactions hg38 Thymus Primary tissue UBERON:0002370 Immune Organ Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,261,324 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=thymus_fetal-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/10.1038/ Lymphatic Unknown Nasser_2021_ABC_enhancer_gene Thymus ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCGLYDIFUPE Nasser_2021_ABC_enhancer_gene formatted_output_astrocyte-ENCODE_EnhancerPredictionsFull_lifted.bed.gz 54,598 24,488,802 enhancer-gene interactions hg38 Astrocyte Primary cell CL:0000127 Brain Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 3,637,283 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=astrocyte-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/natur Nervous Unknown Nasser_2021_ABC_enhancer_gene Astrocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCGRREIWLXT Nasser_2021_ABC_enhancer_gene formatted_output_epithelial_cell_of_prostate-ENCODE_EnhancerPredictionsFull_lifted.bed.gz 58,824 24,947,869 enhancer-gene interactions hg38 Epithelial cell Primary cell CL:0000066 Male Reproductive Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 3,949,361 03/07/2021 12/05/2025 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=epithelial_cell_of_prostate-ENCODE;tissue_of_origin=Prostate;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955 Reproductive Unknown Nasser_2021_ABC_enhancer_gene Epithelial cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCGUXNNZVOM Nasser_2021_ABC_enhancer_gene formatted_output_thymus_fetal-Roadmap_EnhancerPredictionsFull.bed.gz 63,090 40,854,277 enhancer-gene interactions hg19 Thymus Primary tissue UBERON:0002370 Immune Organ Not applicable Not reported Not applicable Not applicable ABC_[Activity-by-Contact_model] bed bed4+19 interact 4,223,573 03/07/2021 10/04/2024 https://www.engreitzlab.org/resources Not applicable Chromatin interactions ABC_[Activity-by-Contact_model] enhancer-gene interactions version=2021;Original_cell_type=thymus_fetal-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;source_pubmed=25693563;source_doi=https://doi.org/10.1038/nature14248;abc_celltype_ Lymphatic Fetal Nasser_2021_ABC_enhancer_gene Thymus ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Life stage: Fetal] [Chromatin interactions]
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