Fibroblast NGABC2D7Z2KLW2 • Nasser 2021 ABC enhancer gene ABC Fibroblast Chromatin interactions Show metadata identifier NGABC2D7Z2KLW2 data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 61,114 bp_covered 30,331,667 output_type enhancer-gene interactions genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,101,710 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_foreskin_fibroblast-Roadmap_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 177e333cd36ff93abffc7405d583d495 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_foreskin_fibroblast-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_foreskin_fibroblast-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_mo link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/foreskin_fibroblast-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/foreskin_fibroblast-Roadmap_EnhancerPredictionsFull.txt.lifted. raw_file_md5 2da6b3c951cb729961fab941538ec1d9 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=foreskin_fibroblast-Roadmap;tissue_of_origin=Foreskin;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;so system_category Integumentary life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Fibroblast ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
GM12878 NGABC2UV65LQMB • Nasser 2021 ABC enhancer gene ABC GM12878 Chromatin interactions Show metadata identifier NGABC2UV65LQMB data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 66,850 bp_covered 36,934,330 output_type enhancer-gene interactions genome_build hg38 cell_type GM12878 biosample_type Primary cell biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,470,014 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_GM12878-Roadmap_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 a33193c35d18717c70d0e5edd4384d5d wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_GM12878-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_i tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_GM12878-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/GM12878-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/GM12878-Roadmap_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 0e8d3a48e51dd507477e8ce4b87ad897 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=GM12878-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/10.1038/natur system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene GM12878 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
CD14+ monocyte NGABC3ZERRDFRI • Nasser 2021 ABC enhancer gene ABC CD14+ monocyte Chromatin interactions Show metadata identifier NGABC3ZERRDFRI data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 65,820 bp_covered 21,446,224 output_type enhancer-gene interactions genome_build hg38 cell_type CD14+ monocyte biosample_type Primary cell biosample_term_id CL:0001054 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,498,211 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte_treated_with_BG_1h-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 b94e73d5ad2b8e070d5433445490a616 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte_treated_with_BG_1h-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/AB tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte_treated_with_BG_1h-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_AB link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD14-positive_monocyte_treated_with_BG_1h-Novakovic2016_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD14-positive_monocyte_treated_with raw_file_md5 e96aecfccbb076f105ff0651c2b45897 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=CD14-positive_monocyte_treated_with_BG_1h-Novakovic2016;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Novakovic 2016;biosample_type_note=done;source_pubmed=27 system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene CD14+ monocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
CD8+ alpha-beta T cell NGABC3ZGAHR6YE • Nasser 2021 ABC enhancer gene ABC CD8+ alpha-beta T cell Chromatin interactions Show metadata identifier NGABC3ZGAHR6YE data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 68,002 bp_covered 23,549,195 output_type enhancer-gene interactions genome_build hg38 cell_type CD8+ alpha-beta T cell biosample_type Primary cell biosample_term_id CL:0000625 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,621,591 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD8-positive_alpha-beta_T_cell-Corces2016_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 eea1e0e10e1d352d0fa21c7fbd95ba98 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD8-positive_alpha-beta_T_cell-Corces2016_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by- tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD8-positive_alpha-beta_T_cell-Corces2016_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD8-positive_alpha-beta_T_cell-Corces2016_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD8-positive_alpha-beta_T_cell-Corces2016_Enhance raw_file_md5 9ad5fe7fe6c1b96dcb4d4dff24aeed37 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=CD8-positive_alpha-beta_T_cell-Corces2016;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Corces2016;biosample_type_note=needs revising;source_pubmed=27526324;s system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene CD8+ alpha-beta T cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
THP-1 NGABC46FJBPY2P • Nasser 2021 ABC enhancer gene ABC THP-1 Chromatin interactions Show metadata identifier NGABC46FJBPY2P data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 60,226 bp_covered 19,546,593 output_type enhancer-gene interactions genome_build hg38 cell_type THP-1 biosample_type Cell line biosample_term_id EFO:0001253 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 3,962,892 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_48h_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 7133d3361c21aee33afb2ca9dca8238c wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_48h_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_48h_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4 link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/THP_pmaLPS_ATAC_48h_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/THP_pmaLPS_ATAC_48h_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 53f12bc64ef1c987a23b93ff389c75b4 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=THP_pmaLPS_ATAC_48h;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Nasser_2021;biosample_type_note=needs revising;source_pubmed=33828297;source_doi=https://doi system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene THP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
T-cell NGABC47T3XCDPI • Nasser 2021 ABC enhancer gene ABC T-cell Chromatin interactions Show metadata identifier NGABC47T3XCDPI data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 65,766 bp_covered 50,919,318 output_type enhancer-gene interactions genome_build hg38 cell_type T-cell biosample_type Primary cell biosample_term_id CL:0000084 tissue_category Immune encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,420,630 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_T-cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 946cb6f24f301af3ae28a95e4d3a7730 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_T-cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_int tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_T-cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19 link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/T-cell-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/T-cell-ENCODE_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 dbc4db5a5006a15cf458791a53e1a1f1 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=T-cell-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11 system_category Lymphatic life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene T-cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
THP-1 NGABC4V5ACZFNG • Nasser 2021 ABC enhancer gene ABC THP-1 Chromatin interactions Show metadata identifier NGABC4V5ACZFNG data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 58,058 bp_covered 16,756,061 output_type enhancer-gene interactions genome_build hg38 cell_type THP-1 biosample_type Cell line biosample_term_id EFO:0001253 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 3,829,324 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_96h_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 0502e5321ac3545064a5e7b15a08d2fd wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_96h_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_96h_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4 link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/THP_pmaLPS_ATAC_96h_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/THP_pmaLPS_ATAC_96h_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 c1353a05d74a94d7bf7486b07eccea1c data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=THP_pmaLPS_ATAC_96h;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Nasser_2021;biosample_type_note=needs revising;source_pubmed=33828297;source_doi=https://doi system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene THP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Dendritic cell NGABC55Q6FSSK6 • Nasser 2021 ABC enhancer gene ABC Dendritic cell Chromatin interactions Show metadata identifier NGABC55Q6FSSK6 data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 62,214 bp_covered 21,968,247 output_type enhancer-gene interactions genome_build hg38 cell_type Dendritic cell biosample_type In vitro differentiated cells biosample_term_id CL:0000451 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,253,456 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_dendritic_cell_treated_with_Lipopolysaccharide_0_ng-mL_for_0_hour-Garber2017_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 159a3de6183ad4de9871c2e88c073b85 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_dendritic_cell_treated_with_Lipopolysaccharide_0_ng-mL_for_0_hour-Garber2017_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lift tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_dendritic_cell_treated_with_Lipopolysaccharide_0_ng-mL_for_0_hour-Garber2017_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_ link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/dendritic_cell_treated_with_Lipopolysaccharide_0_ng-mL_for_0_hour-Garber2017_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/dendritic_cell raw_file_md5 e9bd2f4adcccd6ba101df29b24341b81 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=dendritic_cell_treated_with_Lipopolysaccharide_0_ng-mL_for_0_hour-Garber2017;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Garber 2017;biosample_type_note=nee system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Dendritic cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Megakaryocyte NGABC5M3Z2LMSX • Nasser 2021 ABC enhancer gene ABC Megakaryocyte Chromatin interactions Show metadata identifier NGABC5M3Z2LMSX data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 62,594 bp_covered 22,382,453 output_type enhancer-gene interactions genome_build hg38 cell_type Megakaryocyte biosample_type Primary cell biosample_term_id CL:0000556 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,156,528 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_megakaryocyte-erythroid_progenitor-Corces2016_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 1a2fecfb28e80bb136dbf43f50289757 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_megakaryocyte-erythroid_progenitor-Corces2016_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_megakaryocyte-erythroid_progenitor-Corces2016_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Acti link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/megakaryocyte-erythroid_progenitor-Corces2016_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/megakaryocyte-erythroid_progenitor-Corces2016 raw_file_md5 734041c745dab0d73ef57bfdf712ac07 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=megakaryocyte-erythroid_progenitor-Corces2016;tissue_of_origin=Peripheral blood;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Corces 2016;biosample_type_note= system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Megakaryocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Sigmoid colon NGABC5S7PMOP6M • Nasser 2021 ABC enhancer gene ABC Sigmoid colon Chromatin interactions Show metadata identifier NGABC5S7PMOP6M data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 64,098 bp_covered 16,853,056 output_type enhancer-gene interactions genome_build hg38 cell_type Sigmoid colon biosample_type Tissue biosample_term_id UBERON:0001159 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,320,168 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_sigmoid_colon-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 7d498781c2730e47c03caab2d2fc8747 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_sigmoid_colon-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plu tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_sigmoid_colon-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/sigmoid_colon-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/sigmoid_colon-ENCODE_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 6e5b50fb62addbb6b6e0fb461005d977 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=sigmoid_colon-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/n system_category Digestive life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Sigmoid colon ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Dendritic cell NGABC5SNKMSOVC • Nasser 2021 ABC enhancer gene ABC Dendritic cell Chromatin interactions Show metadata identifier NGABC5SNKMSOVC data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 63,126 bp_covered 21,828,782 output_type enhancer-gene interactions genome_build hg38 cell_type Dendritic cell biosample_type In vitro differentiated cells biosample_term_id CL:0000451 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,332,980 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_1_hour-Garber2017_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 0e9ca2ccfe8283659a14e359e0caf1d9 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_1_hour-Garber2017_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_li tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_1_hour-Garber2017_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg3 link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_1_hour-Garber2017_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/dendritic_ce raw_file_md5 84a08e2e15c96fc72f53e79e86bdf43d data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_1_hour-Garber2017;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Garber 2017;biosample_type_note=n system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Dendritic cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Ovary NGABC5U4PRCWYA • Nasser 2021 ABC enhancer gene ABC Ovary Chromatin interactions Show metadata identifier NGABC5U4PRCWYA data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 62,940 bp_covered 39,079,770 output_type enhancer-gene interactions genome_build hg38 cell_type Ovary biosample_type Primary cell biosample_term_id NCIT:C12404 tissue_category Female Reproductive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,214,325 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_ovary-Roadmap_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 6aefd69a37ed04970bb307d08ad4dd73 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_ovary-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_int tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_ovary-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19 link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/ovary-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/ovary-Roadmap_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 2c7a5f457a9249051d139756c0bd56d6 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=ovary-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/10.1038/nature1 system_category Reproductive life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Ovary ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
MDA-MB-231 NGABC5UEZNJUWI • Nasser 2021 ABC enhancer gene ABC MDA-MB-231 Chromatin interactions Show metadata identifier NGABC5UEZNJUWI data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 61,544 bp_covered 37,828,989 output_type enhancer-gene interactions genome_build hg38 cell_type MDA-MB-231 biosample_type Cell line biosample_term_id EFO:0001209 tissue_category Breast encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,140,594 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_MDA-MB-231_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 8ed2019ba6b69c22a3163f95c4a8f1f0 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_MDA-MB-231_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_intera tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_MDA-MB-231_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_in link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/MDA-MB-231_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/MDA-MB-231_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 96e3a8ad198387bd7b7af07e17acf4ac data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=MDA-MB-231;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Ampuja2017;biosample_type_note=needs revising;source_pubmed=28077088;source_doi=10.1186/s12864-016-34 system_category Reproductive life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene MDA-MB-231 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
CD14+ monocyte NGABC5XI5U7RF3 • Nasser 2021 ABC enhancer gene ABC CD14+ monocyte Chromatin interactions Show metadata identifier NGABC5XI5U7RF3 data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 66,500 bp_covered 23,549,235 output_type enhancer-gene interactions genome_build hg38 cell_type CD14+ monocyte biosample_type Primary cell biosample_term_id CL:0001054 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,588,848 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte_treated_with_LPS_1h-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 a6349673a5b621bd964761cd32126f1c wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte_treated_with_LPS_1h-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/A tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte_treated_with_LPS_1h-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_A link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD14-positive_monocyte_treated_with_LPS_1h-Novakovic2016_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD14-positive_monocyte_treated_wit raw_file_md5 c23fe45797907c5e8103efe540669f79 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=CD14-positive_monocyte_treated_with_LPS_1h-Novakovic2016;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Novakovic 2016;biosample_type_note=done;source_pubmed=2 system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene CD14+ monocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Adrenal gland NGABC5YHYC42NK • Nasser 2021 ABC enhancer gene ABC Adrenal gland Chromatin interactions Show metadata identifier NGABC5YHYC42NK data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 64,184 bp_covered 33,796,090 output_type enhancer-gene interactions genome_build hg38 cell_type Adrenal gland biosample_type Primary tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,338,993 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_adrenal_gland_fetal-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 c8852785b38f773fbf1bdd37959a27c3 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_adrenal_gland_fetal-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/b tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_adrenal_gland_fetal-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_mod link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/adrenal_gland_fetal-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/adrenal_gland_fetal-ENCODE_EnhancerPredictionsFull.txt.lifted.be raw_file_md5 bf0130a4983b21f48b31cc9d15b600a1 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=adrenal_gland_fetal-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10. system_category Endocrine life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Adrenal gland ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Small intestine NGABC5ZJC7JSIE • Nasser 2021 ABC enhancer gene ABC Small intestine Chromatin interactions Show metadata identifier NGABC5ZJC7JSIE data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 68,334 bp_covered 36,733,911 output_type enhancer-gene interactions genome_build hg38 cell_type Small intestine biosample_type Primary tissue biosample_term_id UBERON:0002108 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,626,092 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_small_intestine_fetal-Roadmap_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 d44203b3b204322c754da984d69bebe6 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_small_intestine_fetal-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_mode tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_small_intestine_fetal-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_ link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/small_intestine_fetal-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/small_intestine_fetal-Roadmap_EnhancerPredictionsFull.txt.lif raw_file_md5 d7bd03b47edb67c8f5ad94d3d8b8bf2c data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=small_intestine_fetal-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org system_category Digestive life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Small intestine ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
THP-1 NGABC6DYSG7EY5 • Nasser 2021 ABC enhancer gene ABC THP-1 Chromatin interactions Show metadata identifier NGABC6DYSG7EY5 data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 59,792 bp_covered 17,221,194 output_type enhancer-gene interactions genome_build hg38 cell_type THP-1 biosample_type Cell line biosample_term_id EFO:0001253 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 3,943,809 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_24h_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 c985cf13670790d480b9b01b627c7325 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_24h_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_24h_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4 link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/THP_pmaLPS_ATAC_24h_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/THP_pmaLPS_ATAC_24h_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 378c0c7072b1f0ec18d1ba5d6d8bfffb data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=THP_pmaLPS_ATAC_24h;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Nasser_2021;biosample_type_note=needs revising;source_pubmed=33828297;source_doi=https://doi system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene THP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
HeLa-S3 NGABC6MGI2FXQQ • Nasser 2021 ABC enhancer gene ABC HeLa-S3 Chromatin interactions Show metadata identifier NGABC6MGI2FXQQ data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 58,858 bp_covered 27,484,223 output_type enhancer-gene interactions genome_build hg38 cell_type HeLa-S3 biosample_type Primary cell biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 3,879,035 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_HeLa-S3-Roadmap_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 e81729a084786bf2215e282d239d1f9c wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_HeLa-S3-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_i tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_HeLa-S3-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/HeLa-S3-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/HeLa-S3-Roadmap_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 91bf20b10e5d15aaac3f62a39a9c7878 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=HeLa-S3-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/10.1038/natur system_category Reproductive life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene HeLa-S3 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
BJAB NGABC7O435CTJM • Nasser 2021 ABC enhancer gene ABC BJAB Chromatin interactions Show metadata identifier NGABC7O435CTJM data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 55,468 bp_covered 16,622,715 output_type enhancer-gene interactions genome_build hg38 cell_type BJAB biosample_type Cell line biosample_term_id EFO:0002815 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 3,691,218 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_BJAB_anti-IgM_anti-CD40_4hr-Engreitz_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 b7350476671fcb7d70a524c842d59ed2 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_BJAB_anti-IgM_anti-CD40_4hr-Engreitz_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Conta tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_BJAB_anti-IgM_anti-CD40_4hr-Engreitz_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-C link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/BJAB_anti-IgM_anti-CD40_4hr-Engreitz_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/BJAB_anti-IgM_anti-CD40_4hr-Engreitz_EnhancerPredictio raw_file_md5 bd100a1d78501834266afc0b790cab94 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=BJAB_anti-IgM_anti-CD40_4hr-Engreitz;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Engreitz;biosample_type_note=done;source_pubmed=33828297;source_doi=https:/ system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene BJAB ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Pancreas NGABCA2PM3HCM7 • Nasser 2021 ABC enhancer gene ABC Pancreas Chromatin interactions Show metadata identifier NGABCA2PM3HCM7 data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 65,348 bp_covered 45,566,907 output_type enhancer-gene interactions genome_build hg38 cell_type Pancreas biosample_type Tissue biosample_term_id UBERON:0001264 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,459,275 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_body_of_pancreas-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 dbc72a432e86d9236d3e45db4fd5057c wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_body_of_pancreas-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4 tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_body_of_pancreas-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/ link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/body_of_pancreas-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/body_of_pancreas-ENCODE_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 c8306dd7c1533043ca0f26cbff87da1e data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=body_of_pancreas-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.103 system_category Digestive life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Pancreas ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]