H3F3A • MCF-7 NGENCE2B2EKBKK • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq MCF-7 Histone Show metadata Download track Track metadata identifier NGENCE2B2EKBKK data_source ENCODE Download track Download number_of_intervals 11,642 bp_covered 5,017,244 output_type pseudoreplicated peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR197XDQ biological_replicate 1 technical_replicate 1_1 antibody H3F3A assay Histone ChIP-seq file_format bed narrowPeak file_size 277,995 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF624ICY.bed.gz processed_file_md5 5e83c30e1a1c751f4d285b14f8995be0 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF624ICY.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF624ICY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF624ICY/@@download/ENCFF624ICY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF624ICY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0499709719e6dbec9adb4da146b07d49 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3F3A pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 69 years;Reference=NR;External_resources=GEO:GSE95977;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-25,2015-08-03;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,integumental system;ENCODE_biosample_term_synonyms=MCF7,MCF-7 cell,MCF7 cell;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1) Histone ChIP-seq H3F3A pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR197XDQ] [Life stage: Adult] [Histone ChIP-seq peaks]
H3F3A • Smooth muscle cell NGENCE4G2IPYDL • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Smooth muscle cell Histone Show metadata Download track Track metadata identifier NGENCE4G2IPYDL data_source ENCODE Download track Download number_of_intervals 57,980 bp_covered 40,851,608 output_type replicated peaks genome_build hg38 cell_type Smooth muscle cell biosample_type In vitro differentiated cells biosample_term_id CL:0000192 tissue_category Muscle encode_experiment_id ENCSR672HBY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3F3A assay Histone ChIP-seq file_format bed narrowPeak file_size 1,392,009 downloaded_date 06/12/2022 release_date 11/02/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF737IJL.bed.gz processed_file_md5 ac1f3a12b8c9db5294399ace2592fc95 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF737IJL.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF737IJL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF737IJL/@@download/ENCFF737IJL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF737IJL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9110040d6cc695625ac2ce5e1aa8a8ed data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3F3A replicated peaks track_description version=2024;Biosample_summary=Homo sapiens smooth muscle cell originated from H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=SESCC,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSE96306;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-01-12,2016-04-27;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=smooth muscle cell;ENCODE_cell_slims=smooth muscle cell;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=smooth muscle fiber,myocytes, smooth muscle,SMCs;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000192;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Muscular life_stage Embryonic track_name ENCODE Smooth muscle cell (repl. 1, 2) Histone ChIP-seq H3F3A replicated peaks (narrowPeak) [Experiment: ENCSR672HBY] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3F3A • Neural cell NGENCF5GO6AIGR • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Neural cell Histone Show metadata Download track Track metadata identifier NGENCF5GO6AIGR data_source ENCODE Download track Download number_of_intervals 13,566 bp_covered 6,724,767 output_type pseudoreplicated peaks genome_build hg38 cell_type Neural cell biosample_type In vitro differentiated cells biosample_term_id CL:0002319 tissue_category Brain encode_experiment_id ENCSR873EIA biological_replicate 1 technical_replicate 1_1 antibody H3F3A assay Histone ChIP-seq file_format bed narrowPeak file_size 305,047 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF169WRC.bed.gz processed_file_md5 6a54473f961e410af8fa0c7c6852f75c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF169WRC.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF169WRC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF169WRC/@@download/ENCFF169WRC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF169WRC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 061f7d56a190318d130ca315ae399a57 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3F3A pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens neural cell originated from H1;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSE96437;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-25;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=neural cell;ENCODE_cell_slims=neural cell;ENCODE_system_slims=peripheral nervous system,central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002319;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Embryonic track_name ENCODE Neural cell (repl. 1) Histone ChIP-seq H3F3A pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR873EIA] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3F3A • GM23338 NGENCGCQ2R4BNV • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq GM23338 Histone Show metadata Download track Track metadata identifier NGENCGCQ2R4BNV data_source ENCODE Download track Download number_of_intervals 35,902 bp_covered 21,178,890 output_type replicated peaks genome_build hg38 cell_type GM23338 biosample_type Cell line biosample_term_id EFO:0007950 tissue_category iPSC encode_experiment_id ENCSR313NJN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3F3A assay Histone ChIP-seq file_format bed narrowPeak file_size 738,306 downloaded_date 06/12/2022 release_date 03/01/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF835PIW.bed.gz processed_file_md5 c626c0d42c5fdef50f5d06ac3678c92b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF835PIW.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF835PIW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF835PIW/@@download/ENCFF835PIW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF835PIW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0a3c0ab33ca0dda68a07aef7f012a4d5 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3F3A replicated peaks track_description version=2024;Biosample_summary=Homo sapiens GM23338 originated from GM23248;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE96112;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-01-13,2016-05-03;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=GM23338;ENCODE_cell_slims=induced pluripotent stem cell,stem cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007950;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Stem Cell life_stage Adult track_name ENCODE GM23338 (repl. 1, 2) Histone ChIP-seq H3F3A replicated peaks (narrowPeak) [Experiment: ENCSR313NJN] [Life stage: Adult] [Histone ChIP-seq peaks]
H3F3A • SK-N-SH NGENCGJKW7FPIO • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq SK-N-SH Histone Show metadata Download track Track metadata identifier NGENCGJKW7FPIO data_source ENCODE Download track Download number_of_intervals 269,370 bp_covered 124,450,385 output_type peaks genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR125IJY biological_replicate 1 technical_replicate 1_1 antibody H3F3A assay Histone ChIP-seq file_format bed narrowPeak file_size 6,360,379 downloaded_date 06/04/2018 release_date 10/17/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF031KAY.bed.gz processed_file_md5 0e7cbff7d56aa8ea8fd1986a7669325c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF031KAY.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF031KAY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF031KAY/@@download/ENCFF031KAY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF031KAY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0b5e587e7c6e83a75a3728f950495bf3 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3F3A peaks track_description version=2024;Biosample_summary=Homo sapiens SK-N-SH;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=child 4 years;Reference=PMID:32728046;External_resources=GEO:GSE95937;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-19,2015-08-03;Submitted_track_name=r1.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=SKNSH;Analysis_title=ENCODE3 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Child track_name ENCODE SK-N-SH (repl. 1) Histone ChIP-seq H3F3A peaks (narrowPeak) [Experiment: ENCSR125IJY] [Life stage: Child] [Histone ChIP-seq peaks]
H3F3A • Neural cell NGENCGXJI5PHLZ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Neural cell Histone Show metadata Download track Track metadata identifier NGENCGXJI5PHLZ data_source ENCODE Download track Download number_of_intervals 9,755 bp_covered 4,495,362 output_type pseudoreplicated peaks genome_build hg38 cell_type Neural cell biosample_type In vitro differentiated cells biosample_term_id CL:0002319 tissue_category Brain encode_experiment_id ENCSR873EIA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3F3A assay Histone ChIP-seq file_format bed narrowPeak file_size 221,123 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF773NVB.bed.gz processed_file_md5 7c867169c8ed14cdf0dfabc5a1ca7ba5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF773NVB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF773NVB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF773NVB/@@download/ENCFF773NVB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF773NVB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ac1f7e4852af3f986d8960b3fc4e7810 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3F3A pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens neural cell originated from H1;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSE96437;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-25;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=neural cell;ENCODE_cell_slims=neural cell;ENCODE_system_slims=peripheral nervous system,central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002319;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Embryonic track_name ENCODE Neural cell (repl. 1, 2) Histone ChIP-seq H3F3A pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR873EIA] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3F3A • PC-9 NGENCI3QEP23V7 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq PC-9 Histone Show metadata Download track Track metadata identifier NGENCI3QEP23V7 data_source ENCODE Download track Download number_of_intervals 97,350 bp_covered 95,619,616 output_type pseudoreplicated peaks genome_build hg38 cell_type PC-9 biosample_type Cell line biosample_term_id EFO:0002847 tissue_category Lung encode_experiment_id ENCSR180AAB biological_replicate 2 technical_replicate 2_1 antibody H3F3A assay Histone ChIP-seq file_format bed narrowPeak file_size 2,602,726 downloaded_date 05/15/2024 release_date 01/21/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF026AEI.bed.gz processed_file_md5 d723c7a0b888b63727555c20ef27f84d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF026AEI.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF026AEI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF026AEI/@@download/ENCFF026AEI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF026AEI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 46dec0e6d0468f345d755da37582093f data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3F3A pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens PC-9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSE95969;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-01-18,2016-05-06;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=PC-9;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002847;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Unknown track_name ENCODE PC-9 (repl. 2) Histone ChIP-seq H3F3A pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR180AAB] [Histone ChIP-seq peaks]
H3F3A • DOHH2 NGENCI6M3HQQGN • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq DOHH2 Histone Show metadata Download track Track metadata identifier NGENCI6M3HQQGN data_source ENCODE Download track Download number_of_intervals 51,668 bp_covered 31,773,025 output_type replicated peaks genome_build hg38 cell_type DOHH2 biosample_type Cell line biosample_term_id EFO:0002167 tissue_category Blood encode_experiment_id ENCSR966HBM biological_replicate 1, 2 technical_replicate 1_1, 2_1, 2_2 antibody H3F3A assay Histone ChIP-seq file_format bed narrowPeak file_size 1,253,044 downloaded_date 06/12/2022 release_date 11/02/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF751NAF.bed.gz processed_file_md5 3aec7763efe53d8ec36a3e9448f95d7b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF751NAF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF751NAF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF751NAF/@@download/ENCFF751NAF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF751NAF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 52215eb74d63b084f1c056430a5d733b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3F3A replicated peaks track_description version=2024;Biosample_summary=Homo sapiens DOHH2;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 60 years;Reference=PMID:32728046;External_resources=GEO:GSE96495;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-07,2014-07-11;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=DOHH2;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002167;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE DOHH2 (repl. 1, 2) Histone ChIP-seq H3F3A replicated peaks (narrowPeak) [Experiment: ENCSR966HBM] [Life stage: Adult] [Histone ChIP-seq peaks]
H3F3A • NCI-H929 NGENCIPGE3C3CS • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq NCI-H929 Histone Show metadata Download track Track metadata identifier NGENCIPGE3C3CS data_source ENCODE Download track Download number_of_intervals 66,811 bp_covered 32,828,869 output_type peaks genome_build hg38 cell_type NCI-H929 biosample_type Cell line biosample_term_id EFO:0001221 tissue_category Immune encode_experiment_id ENCSR536SZD biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3F3A assay Histone ChIP-seq file_format bed narrowPeak file_size 1,515,260 downloaded_date 06/04/2018 release_date 01/13/2017 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF204TFB.bed.gz processed_file_md5 2b939309cb5f55ecd52db15ae43b0f4a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF204TFB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF204TFB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF204TFB/@@download/ENCFF204TFB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF204TFB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9257bf3537e02f978ec2c0f484e4f1c0 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3F3A peaks track_description version=2024;Biosample_summary=Homo sapiens NCI-H929;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 62 years;Reference=PMID:32728046;External_resources=GEO:GSE96225;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-01-13,2016-10-12;Submitted_track_name=pool.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=NCI-H929;ENCODE_cell_slims=B cell,cancer cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE3 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001221;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE NCI-H929 (repl. 1, 2) Histone ChIP-seq H3F3A peaks (narrowPeak) [Experiment: ENCSR536SZD] [Life stage: Adult] [Histone ChIP-seq peaks]
H3F3A • DOHH2 NGENCIPWCQNH2C • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq DOHH2 Histone Show metadata Download track Track metadata identifier NGENCIPWCQNH2C data_source ENCODE Download track Download number_of_intervals 38,351 bp_covered 24,892,318 output_type pseudoreplicated peaks genome_build hg38 cell_type DOHH2 biosample_type Cell line biosample_term_id EFO:0002167 tissue_category Blood encode_experiment_id ENCSR966HBM biological_replicate 2 technical_replicate 2_1, 2_2 antibody H3F3A assay Histone ChIP-seq file_format bed narrowPeak file_size 947,019 downloaded_date 06/12/2022 release_date 11/02/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF119TZX.bed.gz processed_file_md5 e9faf30c13510a8a8e72db3392c6dab1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF119TZX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF119TZX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF119TZX/@@download/ENCFF119TZX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF119TZX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 dff003d373a7f4e560bd4fffba3f50f9 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3F3A pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens DOHH2;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 60 years;Reference=PMID:32728046;External_resources=GEO:GSE96495;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-07,2014-07-11;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=DOHH2;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002167;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE DOHH2 (repl. 2) Histone ChIP-seq H3F3A pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR966HBM] [Life stage: Adult] [Histone ChIP-seq peaks]
H3F3A • Neural progenitor cell NGENCIW7WSY4TT • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Neural progenitor cell Histone Show metadata Download track Track metadata identifier NGENCIW7WSY4TT data_source ENCODE Download track Download number_of_intervals 79,218 bp_covered 84,357,104 output_type replicated peaks genome_build hg38 cell_type Neural progenitor cell biosample_type In vitro differentiated cells biosample_term_id CL:0011020 tissue_category Brain encode_experiment_id ENCSR591KSN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3F3A assay Histone ChIP-seq file_format bed narrowPeak file_size 2,041,549 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF297WUP.bed.gz processed_file_md5 b995f7205d88ab9f0e539131a4ad0ab0 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF297WUP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF297WUP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF297WUP/@@download/ENCFF297WUP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF297WUP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f8954f5ea71e0648ee7cacb3d7d85d5a data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3F3A replicated peaks track_description version=2024;Biosample_summary=Homo sapiens neural progenitor cell originated from H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=SESCC,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSE96256;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-11-14,2016-05-26;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=neural progenitor cell;ENCODE_cell_slims=progenitor cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0011020;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Embryonic track_name ENCODE Neural progenitor cell (repl. 1, 2) Histone ChIP-seq H3F3A replicated peaks (narrowPeak) [Experiment: ENCSR591KSN] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3F3A • PC-9 NGENCJ6PXKPP45 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq PC-9 Histone Show metadata Download track Track metadata identifier NGENCJ6PXKPP45 data_source ENCODE Download track Download number_of_intervals 44,058 bp_covered 28,299,255 output_type pseudoreplicated peaks genome_build hg38 cell_type PC-9 biosample_type Cell line biosample_term_id EFO:0002847 tissue_category Lung encode_experiment_id ENCSR180AAB biological_replicate 1 technical_replicate 1_1 antibody H3F3A assay Histone ChIP-seq file_format bed narrowPeak file_size 1,129,908 downloaded_date 05/15/2024 release_date 01/21/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF130WUA.bed.gz processed_file_md5 e367c530555743c28c3aa4ea250581f3 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF130WUA.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF130WUA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF130WUA/@@download/ENCFF130WUA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF130WUA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2de00bfc6f029015c2a06f53fc09739d data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3F3A pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens PC-9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSE95969;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-01-18,2016-05-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=PC-9;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002847;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Unknown track_name ENCODE PC-9 (repl. 1) Histone ChIP-seq H3F3A pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR180AAB] [Histone ChIP-seq peaks]
H3F3A • OCI-LY1 NGENCKD47PIGDX • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq OCI-LY1 Histone Show metadata Download track Track metadata identifier NGENCKD47PIGDX data_source ENCODE Download track Download number_of_intervals 4,177 bp_covered 1,494,772 output_type pseudoreplicated peaks genome_build hg38 cell_type OCI-LY1 biosample_type Cell line biosample_term_id EFO:0005907 tissue_category Immune encode_experiment_id ENCSR678AFU biological_replicate 1 technical_replicate 1_1 antibody H3F3A assay Histone ChIP-seq file_format bed narrowPeak file_size 94,705 downloaded_date 06/12/2022 release_date 10/31/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF570KMU.bed.gz processed_file_md5 98d5936869ff8778cca214051d16e7f7 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF570KMU.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF570KMU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF570KMU/@@download/ENCFF570KMU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF570KMU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4d6cf85f77f31f1b3e68b6891daa679a data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3F3A pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens OCI-LY1;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 44 years;Reference=PMID:32728046;External_resources=GEO:GSE96308;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=OCI-LY1;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005907;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE OCI-LY1 (repl. 1) Histone ChIP-seq H3F3A pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR678AFU] [Life stage: Adult] [Histone ChIP-seq peaks]
H3F3A • MM.1S NGENCKIMNDOQZJ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq MM.1S Histone Show metadata Download track Track metadata identifier NGENCKIMNDOQZJ data_source ENCODE Download track Download number_of_intervals 37,377 bp_covered 28,091,211 output_type pseudoreplicated peaks genome_build hg38 cell_type MM.1S biosample_type Cell line biosample_term_id EFO:0005724 tissue_category Blood encode_experiment_id ENCSR562SRW biological_replicate 1 technical_replicate 1_1 antibody H3F3A assay Histone ChIP-seq file_format bed narrowPeak file_size 927,270 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF870QXB.bed.gz processed_file_md5 7082cb173fbdc1d764d0f2f5a77fb319 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF870QXB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF870QXB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF870QXB/@@download/ENCFF870QXB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF870QXB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 66687a48e3644a18e40a23859f64b734 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3F3A pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens MM.1S;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 42 years;Reference=PMID:32728046;External_resources=GEO:GSE96239;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-05,2015-08-03;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MM.1S;ENCODE_cell_slims=B cell,cancer cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=MM.1 S,MM.1S cell,MM.1-S;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005724;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE MM.1S (repl. 1) Histone ChIP-seq H3F3A pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR562SRW] [Life stage: Adult] [Histone ChIP-seq peaks]
H3F3A • Neural cell NGENCKPOLEQE4S • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Neural cell Histone Show metadata Download track Track metadata identifier NGENCKPOLEQE4S data_source ENCODE Download track Download number_of_intervals 458 bp_covered 133,944 output_type pseudoreplicated peaks genome_build hg38 cell_type Neural cell biosample_type In vitro differentiated cells biosample_term_id CL:0002319 tissue_category Brain encode_experiment_id ENCSR873EIA biological_replicate 2 technical_replicate 2_1 antibody H3F3A assay Histone ChIP-seq file_format bed narrowPeak file_size 9,655 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF886YSS.bed.gz processed_file_md5 cfb0d45642ee29619cac18c7ddb82aed wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF886YSS.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF886YSS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF886YSS/@@download/ENCFF886YSS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF886YSS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6ec1cd795699c84edf31e70612230558 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3F3A pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens neural cell originated from H1;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSE96437;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-25;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=neural cell;ENCODE_cell_slims=neural cell;ENCODE_system_slims=peripheral nervous system,central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002319;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Embryonic track_name ENCODE Neural cell (repl. 2) Histone ChIP-seq H3F3A pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR873EIA] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3F3A • MM.1S NGENCKX6VTSSRI • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq MM.1S Histone Show metadata Download track Track metadata identifier NGENCKX6VTSSRI data_source ENCODE Download track Download number_of_intervals 48,993 bp_covered 42,724,000 output_type pseudoreplicated peaks genome_build hg38 cell_type MM.1S biosample_type Cell line biosample_term_id EFO:0005724 tissue_category Blood encode_experiment_id ENCSR562SRW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3F3A assay Histone ChIP-seq file_format bed narrowPeak file_size 1,252,852 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF243VDF.bed.gz processed_file_md5 70aab2d893989e401c8caae6b76054dc wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF243VDF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF243VDF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF243VDF/@@download/ENCFF243VDF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF243VDF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 10a8e5156f545aaf28211ccb473b9df1 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3F3A pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens MM.1S;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 42 years;Reference=PMID:32728046;External_resources=GEO:GSE96239;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-05,2015-08-03;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=MM.1S;ENCODE_cell_slims=B cell,cancer cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=MM.1 S,MM.1S cell,MM.1-S;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005724;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE MM.1S (repl. 1, 2) Histone ChIP-seq H3F3A pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR562SRW] [Life stage: Adult] [Histone ChIP-seq peaks]
H3F3A • NCI-H929 NGENCLWC2MVVPO • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq NCI-H929 Histone Show metadata Download track Track metadata identifier NGENCLWC2MVVPO data_source ENCODE Download track Download number_of_intervals 11,435 bp_covered 9,575,350 output_type pseudoreplicated peaks genome_build hg38 cell_type NCI-H929 biosample_type Cell line biosample_term_id EFO:0001221 tissue_category Immune encode_experiment_id ENCSR536SZD biological_replicate 1 technical_replicate 1_1 antibody H3F3A assay Histone ChIP-seq file_format bed narrowPeak file_size 280,977 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF695XAG.bed.gz processed_file_md5 a7e99acbbe22fbba1c6d64c617b24030 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF695XAG.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF695XAG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF695XAG/@@download/ENCFF695XAG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF695XAG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 766abdcd15365fa55001e101ef92212c data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3F3A pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens NCI-H929;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 62 years;Reference=PMID:32728046;External_resources=GEO:GSE96225;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-01-13,2016-10-12;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=NCI-H929;ENCODE_cell_slims=B cell,cancer cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001221;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE NCI-H929 (repl. 1) Histone ChIP-seq H3F3A pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR536SZD] [Life stage: Adult] [Histone ChIP-seq peaks]
H3F3A • Neural cell NGENCMD5DCE6XO • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Neural cell Histone Show metadata Download track Track metadata identifier NGENCMD5DCE6XO data_source ENCODE Download track Download number_of_intervals 6,925 bp_covered 3,047,428 output_type replicated peaks genome_build hg38 cell_type Neural cell biosample_type In vitro differentiated cells biosample_term_id CL:0002319 tissue_category Brain encode_experiment_id ENCSR873EIA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3F3A assay Histone ChIP-seq file_format bed narrowPeak file_size 155,861 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF284XPC.bed.gz processed_file_md5 a7e8f585b380b4d0f1041cb1c904c6b4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF284XPC.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF284XPC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF284XPC/@@download/ENCFF284XPC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF284XPC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0b0874333e1d4798915dcc10bd33685b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3F3A replicated peaks track_description version=2024;Biosample_summary=Homo sapiens neural cell originated from H1;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSE96437;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-25;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=neural cell;ENCODE_cell_slims=neural cell;ENCODE_system_slims=peripheral nervous system,central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002319;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Embryonic track_name ENCODE Neural cell (repl. 1, 2) Histone ChIP-seq H3F3A replicated peaks (narrowPeak) [Experiment: ENCSR873EIA] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3F3A • OCI-LY1 NGENCMOUV3KBVE • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq OCI-LY1 Histone Show metadata Download track Track metadata identifier NGENCMOUV3KBVE data_source ENCODE Download track Download number_of_intervals 8,853 bp_covered 4,555,018 output_type pseudoreplicated peaks genome_build hg38 cell_type OCI-LY1 biosample_type Cell line biosample_term_id EFO:0005907 tissue_category Immune encode_experiment_id ENCSR678AFU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3F3A assay Histone ChIP-seq file_format bed narrowPeak file_size 218,125 downloaded_date 06/12/2022 release_date 10/31/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF008GVJ.bed.gz processed_file_md5 42306861fb31d05437cf08cc67187795 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF008GVJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF008GVJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF008GVJ/@@download/ENCFF008GVJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF008GVJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 92e4e5a4e2796d9f42cc60f3f916d530 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3F3A pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens OCI-LY1;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 44 years;Reference=PMID:32728046;External_resources=GEO:GSE96308;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=OCI-LY1;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005907;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE OCI-LY1 (repl. 1, 2) Histone ChIP-seq H3F3A pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR678AFU] [Life stage: Adult] [Histone ChIP-seq peaks]
H3F3A • Bipolar neuron NGENCN2ALOOZ2V • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Bipolar neuron Histone Show metadata Download track Track metadata identifier NGENCN2ALOOZ2V data_source ENCODE Download track Download number_of_intervals 151,962 bp_covered 148,673,344 output_type pseudoreplicated peaks genome_build hg38 cell_type Bipolar neuron biosample_type In vitro differentiated cells biosample_term_id CL:0000103 tissue_category Brain encode_experiment_id ENCSR683ORH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3F3A assay Histone ChIP-seq file_format bed narrowPeak file_size 4,088,797 downloaded_date 07/10/2025 release_date 01/21/2023 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF502FIZ.bed.gz processed_file_md5 4705ff840f2287b1d8ecdaf4fcdc7647 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF502FIZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF502FIZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF502FIZ/@@download/ENCFF502FIZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF502FIZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 223dc6208c7e1a3e4213e19522dd4604 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3F3A pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 _g/mL doxycycline hyclate for 4 days;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE96310;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-25,2015-08-03;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=bipolar neuron;ENCODE_cell_slims=neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000103;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Bipolar neuron (repl. 1, 2) Histone ChIP-seq H3F3A pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR683ORH] [Life stage: Adult] [Histone ChIP-seq peaks]