H3K18ac • Mesenchymal stem cell NGENCALHQHDWVJ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mesenchymal stem cell Histone Show metadata Download track Track metadata identifier NGENCALHQHDWVJ data_source ENCODE Download track Download number_of_intervals 139,672 bp_covered 47,053,906 output_type pseudoreplicated peaks genome_build hg38 cell_type Mesenchymal stem cell biosample_type Stem cell biosample_term_id CL:0000134 tissue_category Connective Tissue encode_experiment_id ENCSR604THF biological_replicate 1 technical_replicate 1_1 antibody H3K18ac assay Histone ChIP-seq file_format bed narrowPeak file_size 3,091,791 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF776UHQ.bed.gz processed_file_md5 da6ece4b89f07b83e5ea01ac16331e31 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF776UHQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF776UHQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF776UHQ/@@download/ENCFF776UHQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF776UHQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 aa741def869d014fa59ca6e8fcc6b509 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K18ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens mesenchymal stem cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM818023;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=mesenchymal stem cell;ENCODE_cell_slims=stem cell,connective tissue cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000134;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Skeletal life_stage Embryonic track_name ENCODE Mesenchymal stem cell (repl. 1) Histone ChIP-seq H3K18ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR604THF] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K18ac • Trophoblast NGENCCC2QURBZY • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Trophoblast Histone Show metadata Download track Track metadata identifier NGENCCC2QURBZY data_source ENCODE Download track Download number_of_intervals 110,371 bp_covered 41,492,333 output_type pseudoreplicated peaks genome_build hg38 cell_type Trophoblast biosample_type Primary cell biosample_term_id UBERON:0000088 tissue_category Embryo encode_experiment_id ENCSR081JRM biological_replicate 2 technical_replicate 2_1 antibody H3K18ac assay Histone ChIP-seq file_format bed narrowPeak file_size 2,687,210 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF644LCP.bed.gz processed_file_md5 0646cdaa58408706f370d87d190efa3e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF644LCP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF644LCP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF644LCP/@@download/ENCFF644LCP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF644LCP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f5623de4467c35c7540e7b7a6fcb55fa data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K18ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens trophoblast cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM908950,GEO:GSM908949;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=trophoblast cell;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=trophoblastic cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000351;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Trophoblast (repl. 2) Histone ChIP-seq H3K18ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR081JRM] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K18ac • Mesendoderm NGENCCVIV46PIV • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mesendoderm Histone Show metadata Download track Track metadata identifier NGENCCVIV46PIV data_source ENCODE Download track Download number_of_intervals 74,882 bp_covered 33,588,148 output_type pseudoreplicated peaks genome_build hg38 cell_type Mesendoderm biosample_type In vitro differentiated cells biosample_term_id BTO:0003953 tissue_category Embryo encode_experiment_id ENCSR565XTT biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K18ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,777,270 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF652APA.bed.gz processed_file_md5 243f4d5e2e47daf375ae931b225ff284 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF652APA.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF652APA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF652APA/@@download/ENCFF652APA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF652APA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 13dd93a142fa2083f9df31c8dcb6b138 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K18ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens mesendoderm originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM908948,GEO:GSM956006;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=mesendoderm;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0000856;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Mesendoderm (repl. 1, 2) Histone ChIP-seq H3K18ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR565XTT] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K18ac • Mesendoderm NGENCEUNYAHD77 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mesendoderm Histone Show metadata Download track Track metadata identifier NGENCEUNYAHD77 data_source ENCODE Download track Download number_of_intervals 44,207 bp_covered 18,820,989 output_type pseudoreplicated peaks genome_build hg38 cell_type Mesendoderm biosample_type In vitro differentiated cells biosample_term_id BTO:0003953 tissue_category Embryo encode_experiment_id ENCSR565XTT biological_replicate 1 technical_replicate 1_1 antibody H3K18ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,009,156 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF313RFE.bed.gz processed_file_md5 bf8241f68d74468f69371352f0f7aed4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF313RFE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF313RFE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF313RFE/@@download/ENCFF313RFE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF313RFE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4fa1bbef37488b4f5654a039784c2d28 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K18ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens mesendoderm originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM908948,GEO:GSM956006;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=mesendoderm;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0000856;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Mesendoderm (repl. 1) Histone ChIP-seq H3K18ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR565XTT] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K18ac • H9 NGENCF43WCYC2N • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H9 Histone Show metadata Download track Track metadata identifier NGENCF43WCYC2N data_source ENCODE Download track Download number_of_intervals 38,293 bp_covered 11,054,539 output_type pseudoreplicated peaks genome_build hg38 cell_type H9 biosample_type Stem cell biosample_term_id EFO:0003045 tissue_category Embryo encode_experiment_id ENCSR294WUR biological_replicate 1, 2 technical_replicate 1_1, 2_3 antibody H3K18ac assay Histone ChIP-seq file_format bed narrowPeak file_size 918,708 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF922MSE.bed.gz processed_file_md5 c3996e085beac4b8cdcbc5b4d325e21b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF922MSE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF922MSE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF922MSE/@@download/ENCFF922MSE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF922MSE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 02fe6199a41cd3e025d330463bff7560 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K18ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H9;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSM706064,GEO:GSM667616;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=H9;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003045;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H9 (repl. 1, 2) Histone ChIP-seq H3K18ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR294WUR] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K18ac • Trophoblast NGENCHHNIPOZLZ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Trophoblast Histone Show metadata Download track Track metadata identifier NGENCHHNIPOZLZ data_source ENCODE Download track Download number_of_intervals 69,550 bp_covered 23,657,627 output_type pseudoreplicated peaks genome_build hg38 cell_type Trophoblast biosample_type Primary cell biosample_term_id UBERON:0000088 tissue_category Embryo encode_experiment_id ENCSR081JRM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K18ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,648,933 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF645FKT.bed.gz processed_file_md5 3015c40ca1dadf155b642f5fe6c35ac3 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF645FKT.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF645FKT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF645FKT/@@download/ENCFF645FKT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF645FKT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6be10ebace2173fbca17f62711e36c02 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K18ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens trophoblast cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM908950,GEO:GSM908949;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=trophoblast cell;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=trophoblastic cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000351;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Trophoblast (repl. 1, 2) Histone ChIP-seq H3K18ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR081JRM] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K18ac • H1-hESC NGENCJDWV4XLHZ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H1-hESC Histone Show metadata Download track Track metadata identifier NGENCJDWV4XLHZ data_source ENCODE Download track Download number_of_intervals 92,739 bp_covered 23,112,589 output_type pseudoreplicated peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR038PFD biological_replicate 2 technical_replicate 2_1 antibody H3K18ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,824,093 downloaded_date 06/12/2022 release_date 11/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF123MWV.bed.gz processed_file_md5 f2a5e85a2830b0fa72977aa435a643c8 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF123MWV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF123MWV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF123MWV/@@download/ENCFF123MWV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF123MWV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e88b02162744f4ae14f1c7c7c1c34b12 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K18ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM602259,GEO:GSM605304;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 2) Histone ChIP-seq H3K18ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR038PFD] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K18ac • Trophoblast NGENCKPHP7F6V5 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Trophoblast Histone Show metadata Download track Track metadata identifier NGENCKPHP7F6V5 data_source ENCODE Download track Download number_of_intervals 53,082 bp_covered 18,308,507 output_type pseudoreplicated peaks genome_build hg38 cell_type Trophoblast biosample_type Primary cell biosample_term_id UBERON:0000088 tissue_category Embryo encode_experiment_id ENCSR081JRM biological_replicate 1 technical_replicate 1_1 antibody H3K18ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,152,096 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF893YEZ.bed.gz processed_file_md5 8d274a4f666f3a78b07221bbb6e67ee6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF893YEZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF893YEZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF893YEZ/@@download/ENCFF893YEZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF893YEZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 432e134621382e3728221962f9b6dfbf data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K18ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens trophoblast cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM908950,GEO:GSM908949;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=trophoblast cell;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=trophoblastic cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000351;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Trophoblast (repl. 1) Histone ChIP-seq H3K18ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR081JRM] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K18ac • H1-hESC NGENCLPSTV3IA4 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H1-hESC Histone Show metadata Download track Track metadata identifier NGENCLPSTV3IA4 data_source ENCODE Download track Download number_of_intervals 65,787 bp_covered 17,464,294 output_type pseudoreplicated peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR038PFD biological_replicate 1 technical_replicate 1_1 antibody H3K18ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,279,372 downloaded_date 06/12/2022 release_date 11/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF012XAI.bed.gz processed_file_md5 a4f64c2c3a148c749436a18c58cde410 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF012XAI.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF012XAI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF012XAI/@@download/ENCFF012XAI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF012XAI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f557affcbea1c556b2c3fcc3ede3ae4e data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K18ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM602259,GEO:GSM605304;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1) Histone ChIP-seq H3K18ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR038PFD] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K18ac • H1-hESC NGENCM2DDYP26G • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H1-hESC Histone Show metadata Download track Track metadata identifier NGENCM2DDYP26G data_source ENCODE Download track Download number_of_intervals 85,339 bp_covered 28,551,435 output_type pseudoreplicated peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR038PFD biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K18ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,870,714 downloaded_date 06/12/2022 release_date 11/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF983IAH.bed.gz processed_file_md5 e64be6aafd67c60def8b95a39611e8a8 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF983IAH.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF983IAH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF983IAH/@@download/ENCFF983IAH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF983IAH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 cfaa55797e603e1cced48c2228604faf data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K18ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM602259,GEO:GSM605304;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1, 2) Histone ChIP-seq H3K18ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR038PFD] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K18ac • IMR-90 NGENCOB4OB4JSJ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq IMR-90 Histone Show metadata Download track Track metadata identifier NGENCOB4OB4JSJ data_source ENCODE Download track Download number_of_intervals 158,316 bp_covered 56,754,082 output_type pseudoreplicated peaks genome_build hg38 cell_type IMR-90 biosample_type Cell line biosample_term_id EFO:0001196 tissue_category Lung encode_experiment_id ENCSR383CBN biological_replicate 1 technical_replicate 1_1 antibody H3K18ac assay Histone ChIP-seq file_format bed narrowPeak file_size 4,103,756 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF569JQE.bed.gz processed_file_md5 b2bca8438508ac93cec87f1d66a57744 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF569JQE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF569JQE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF569JQE/@@download/ENCFF569JQE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF569JQE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4d08f582c5dcf537fe6c8c0494875b9d data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K18ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens IMR-90;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=GEO:GSM521884,GEO:GSM469965;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=IMR90;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001196;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Embryonic track_name ENCODE IMR-90 (repl. 1) Histone ChIP-seq H3K18ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR383CBN] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K18ac • Neuronal stem cell NGENCPV2QBB4AZ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Neuronal stem cell Histone Show metadata Download track Track metadata identifier NGENCPV2QBB4AZ data_source ENCODE Download track Download number_of_intervals 190,781 bp_covered 55,994,421 output_type pseudoreplicated peaks genome_build hg38 cell_type Neuronal stem cell biosample_type In vitro differentiated cells biosample_term_id CL:0000047 tissue_category Embryo encode_experiment_id ENCSR182XTG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K18ac assay Histone ChIP-seq file_format bed narrowPeak file_size 4,211,827 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF998ATB.bed.gz processed_file_md5 6095587fe01375680587d58171a7f07d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF998ATB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF998ATB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF998ATB/@@download/ENCFF998ATB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF998ATB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8f3ad901fe30432c6c6b097acb8b7d22 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K18ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens neuronal stem cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM956007,GEO:GSM818024;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=neuronal stem cell;ENCODE_cell_slims=stem cell,neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NSC,neuronal stem cell,neural stem cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000047;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Neuronal stem cell (repl. 1, 2) Histone ChIP-seq H3K18ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR182XTG] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K18ac • Neuronal stem cell NGENCPXFT73Y5G • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Neuronal stem cell Histone Show metadata Download track Track metadata identifier NGENCPXFT73Y5G data_source ENCODE Download track Download number_of_intervals 155,345 bp_covered 49,938,516 output_type replicated peaks genome_build hg38 cell_type Neuronal stem cell biosample_type In vitro differentiated cells biosample_term_id CL:0000047 tissue_category Embryo encode_experiment_id ENCSR182XTG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K18ac assay Histone ChIP-seq file_format bed narrowPeak file_size 3,485,288 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF294VJY.bed.gz processed_file_md5 d4ad10f72538db0126afbff8a3f73644 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF294VJY.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF294VJY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF294VJY/@@download/ENCFF294VJY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF294VJY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7d7297bddf5510e0ec7af33092c45c4a data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K18ac replicated peaks track_description version=2024;Biosample_summary=Homo sapiens neuronal stem cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM956007,GEO:GSM818024;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=neuronal stem cell;ENCODE_cell_slims=stem cell,neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NSC,neuronal stem cell,neural stem cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000047;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Neuronal stem cell (repl. 1, 2) Histone ChIP-seq H3K18ac replicated peaks (narrowPeak) [Experiment: ENCSR182XTG] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K18ac • Mesenchymal stem cell NGENCQ6VJHLBOU • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mesenchymal stem cell Histone Show metadata Download track Track metadata identifier NGENCQ6VJHLBOU data_source ENCODE Download track Download number_of_intervals 95,820 bp_covered 36,905,396 output_type pseudoreplicated peaks genome_build hg38 cell_type Mesenchymal stem cell biosample_type Stem cell biosample_term_id CL:0000134 tissue_category Connective Tissue encode_experiment_id ENCSR433FJP biological_replicate 1 technical_replicate 1_1 antibody H3K18ac assay Histone ChIP-seq file_format bed narrowPeak file_size 2,114,475 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF520LDT.bed.gz processed_file_md5 1c8c01c49b73c0405618f8ddd314daa6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF520LDT.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF520LDT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF520LDT/@@download/ENCFF520LDT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF520LDT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b56366edb460ec247c68b083e58f6b61 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K18ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens mesenchymal stem cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM818022;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=mesenchymal stem cell;ENCODE_cell_slims=stem cell,connective tissue cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000134;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Skeletal life_stage Embryonic track_name ENCODE Mesenchymal stem cell (repl. 1) Histone ChIP-seq H3K18ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR433FJP] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K18ac • IMR-90 NGENCQPW545L4P • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq IMR-90 Histone Show metadata Download track Track metadata identifier NGENCQPW545L4P data_source ENCODE Download track Download number_of_intervals 107,944 bp_covered 44,705,839 output_type replicated peaks genome_build hg38 cell_type IMR-90 biosample_type Cell line biosample_term_id EFO:0001196 tissue_category Lung encode_experiment_id ENCSR383CBN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K18ac assay Histone ChIP-seq file_format bed narrowPeak file_size 2,879,062 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF341PQH.bed.gz processed_file_md5 34a2f6cd6ada2476b6c8e984ec02f8e6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF341PQH.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF341PQH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF341PQH/@@download/ENCFF341PQH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF341PQH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 32e51eff7ca23835f398bea11b0b6dfa data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K18ac replicated peaks track_description version=2024;Biosample_summary=Homo sapiens IMR-90;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=GEO:GSM521884,GEO:GSM469965;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=IMR90;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001196;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Embryonic track_name ENCODE IMR-90 (repl. 1, 2) Histone ChIP-seq H3K18ac replicated peaks (narrowPeak) [Experiment: ENCSR383CBN] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K18ac • Mesendoderm NGENCR2EL7WD46 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mesendoderm Histone Show metadata Download track Track metadata identifier NGENCR2EL7WD46 data_source ENCODE Download track Download number_of_intervals 63,514 bp_covered 30,650,744 output_type replicated peaks genome_build hg38 cell_type Mesendoderm biosample_type In vitro differentiated cells biosample_term_id BTO:0003953 tissue_category Embryo encode_experiment_id ENCSR565XTT biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K18ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,559,995 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF394OOB.bed.gz processed_file_md5 521c1bf42bb672315827b8152e4b0e18 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF394OOB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF394OOB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF394OOB/@@download/ENCFF394OOB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF394OOB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b64a37963520a4869936a5c4082aaf60 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K18ac replicated peaks track_description version=2024;Biosample_summary=Homo sapiens mesendoderm originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM908948,GEO:GSM956006;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=mesendoderm;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0000856;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Mesendoderm (repl. 1, 2) Histone ChIP-seq H3K18ac replicated peaks (narrowPeak) [Experiment: ENCSR565XTT] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K18ac • IMR-90 NGENCR3B2HKSM2 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq IMR-90 Histone Show metadata Download track Track metadata identifier NGENCR3B2HKSM2 data_source ENCODE Download track Download number_of_intervals 99,451 bp_covered 37,513,753 output_type pseudoreplicated peaks genome_build hg38 cell_type IMR-90 biosample_type Cell line biosample_term_id EFO:0001196 tissue_category Lung encode_experiment_id ENCSR383CBN biological_replicate 2 technical_replicate 2_1 antibody H3K18ac assay Histone ChIP-seq file_format bed narrowPeak file_size 2,557,118 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF966SAS.bed.gz processed_file_md5 fdedfe8063d64c094efa93d0dc98fc2f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF966SAS.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF966SAS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF966SAS/@@download/ENCFF966SAS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF966SAS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9667f5701b2fa318bd5b44acefc8fde2 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K18ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens IMR-90;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=GEO:GSM521884,GEO:GSM469965;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=IMR90;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001196;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Embryonic track_name ENCODE IMR-90 (repl. 2) Histone ChIP-seq H3K18ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR383CBN] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K18ac • IMR-90 NGENCSB2ECJCTD • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq IMR-90 Histone Show metadata Download track Track metadata identifier NGENCSB2ECJCTD data_source ENCODE Download track Download number_of_intervals 170,164 bp_covered 58,756,436 output_type pseudoreplicated peaks genome_build hg38 cell_type IMR-90 biosample_type Cell line biosample_term_id EFO:0001196 tissue_category Lung encode_experiment_id ENCSR383CBN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K18ac assay Histone ChIP-seq file_format bed narrowPeak file_size 4,406,102 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF807EZS.bed.gz processed_file_md5 be0d9060fecce47515e350ae026a8420 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF807EZS.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF807EZS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF807EZS/@@download/ENCFF807EZS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF807EZS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 21d0a586f946a6d29a1e8ecd4ac10652 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K18ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens IMR-90;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=GEO:GSM521884,GEO:GSM469965;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=IMR90;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001196;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Embryonic track_name ENCODE IMR-90 (repl. 1, 2) Histone ChIP-seq H3K18ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR383CBN] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K18ac • Trophoblast NGENCZ2DVKK4LA • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Trophoblast Histone Show metadata Download track Track metadata identifier NGENCZ2DVKK4LA data_source ENCODE Download track Download number_of_intervals 27,915 bp_covered 10,599,654 output_type replicated peaks genome_build hg38 cell_type Trophoblast biosample_type Primary cell biosample_term_id UBERON:0000088 tissue_category Embryo encode_experiment_id ENCSR081JRM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K18ac assay Histone ChIP-seq file_format bed narrowPeak file_size 674,797 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF118UQG.bed.gz processed_file_md5 1684e10d5ad7d9314641e01a63c59770 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF118UQG.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF118UQG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF118UQG/@@download/ENCFF118UQG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF118UQG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 70dac3eaab7d2e15beca17833c954218 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K18ac replicated peaks track_description version=2024;Biosample_summary=Homo sapiens trophoblast cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM908950,GEO:GSM908949;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=trophoblast cell;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=trophoblastic cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000351;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Trophoblast (repl. 1, 2) Histone ChIP-seq H3K18ac replicated peaks (narrowPeak) [Experiment: ENCSR081JRM] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K18ac • H9 NGRMP3GAQY7ULD • ROADMAP [lifted]25693563 ChIP-seq H9 Histone Show metadata Download track Track metadata identifier NGRMP3GAQY7ULD data_source ROADMAP-lifted Download track Download number_of_intervals 34,915 bp_covered 9,525,947 output_type peaks genome_build hg38 cell_type H9 biosample_type Stem cell biosample_term_id EFO:0003045 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K18ac assay ChIP-seq file_format bed narrowPeak-lifted file_size 1,110,976 downloaded_date 08/15/2018 release_date 11/30/2014 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/UCSD.H9.H3K18ac.SK375.narrowPeak.lifted.bed.gz processed_file_md5 189f57d0f797b8a6d37c99a26647fee2 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/UCSD.H9.H3K18ac.SK375.narrowPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/UCSD.H9.H3K18ac.SK375.narrowPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/narrowPeak/UCSD.H9.H3K18ac.SK375.narrowPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/narrowpeak/UCSD.H9.H3K18ac.SK375.narrowPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/narrowpeak/ raw_file_md5 fb7b7b2abd72b5d3eab7e08a73be861b data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K18ac peaks track_description version=2015;Original_cell_type=H9;Donor=SK375;schema=BED3+10;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP.html;original_biosample_term_id=EFO:0003045;is_hg38_lifted=yes system_category Embryo life_stage Embryonic track_name ROADMAP-lifted H9 ChIP-seq H3K18ac-histone-mark peaks (narrowPeak-lifted) [Life stage: Embryonic] [Histone ChIP-seq peaks]