BRCA1 • GM12878 NGENCIXYEINRZZ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENCIXYEINRZZ data_source ENCODE Download track Download number_of_intervals 1,094 bp_covered 275,921 output_type IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DZS biological_replicate 2 technical_replicate 2_1 antibody BRCA1 assay TF ChIP-seq file_format bed narrowPeak file_size 21,497 downloaded_date 06/12/2022 release_date 01/08/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF134PWW.bed.gz processed_file_md5 e7a4bfce1ee92f9f7df0da206ec53399 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF134PWW.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF134PWW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF134PWW/@@download/ENCFF134PWW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF134PWW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 16728149fd312f1ace1d2835b3c45bee data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM935377,UCSC-ENCODE-hg19:wgEncodeEH001830;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,B cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 2) TF ChIP-seq BRCA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DZS] [Life stage: Adult] [TF ChIP-seq peaks]
BRCA1 • HepG2 NGENCIXYWXFJF6 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCIXYWXFJF6 data_source ENCODE Download track Download number_of_intervals 4,047 bp_covered 1,692,202 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR343RJR biological_replicate 2 technical_replicate 2_1 antibody BRCA1 assay TF ChIP-seq file_format bed narrowPeak file_size 80,079 downloaded_date 06/12/2022 release_date 07/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF976ZEI.bed.gz processed_file_md5 9376df1ee6382ade2f83079ef382c955 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF976ZEI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF976ZEI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF976ZEI/@@download/ENCFF976ZEI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF976ZEI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4c4ca599b7c812792db941a041cbeac5 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BRCA1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170476;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2020-07-08,2020-06-26;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) TF ChIP-seq BRCA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR343RJR] [Life stage: Child] [TF ChIP-seq peaks]
BRCA1 • HepG2 NGENCKX3JDRKLJ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCKX3JDRKLJ data_source ENCODE Download track Download number_of_intervals 9,554 bp_covered 4,665,383 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR343RJR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BRCA1 assay TF ChIP-seq file_format bed narrowPeak file_size 191,606 downloaded_date 06/12/2022 release_date 07/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF585LUC.bed.gz processed_file_md5 d39bf058e1998f981e248afa34c0aadd wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF585LUC.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF585LUC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF585LUC/@@download/ENCFF585LUC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF585LUC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2a47712a2ae05e58e1ab342913792a35 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BRCA1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170476;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2020-07-08,2020-06-26;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq BRCA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR343RJR] [Life stage: Child] [TF ChIP-seq peaks]
BRCA1 • HepG2 NGENCLKM4X26CO • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCLKM4X26CO data_source ENCODE Download track Download number_of_intervals 910 bp_covered 244,406 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000EDY biological_replicate 1 technical_replicate 1_1 antibody BRCA1 assay TF ChIP-seq file_format bed narrowPeak file_size 18,096 downloaded_date 06/12/2022 release_date 01/05/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF661NVI.bed.gz processed_file_md5 376e4106977052269a54ee1c02c858cd wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF661NVI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF661NVI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF661NVI/@@download/ENCFF661NVI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF661NVI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c343766eacde2272164a24ea96dd6758 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1,RegulomeDB_1_0,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_0;Life_stage_age=child 15 years;Reference=PMID:32728244;External_resources=GEO:GSM935609,UCSC-ENCODE-hg19:wgEncodeEH001859;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) TF ChIP-seq BRCA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EDY] [Life stage: Child] [TF ChIP-seq peaks]
BRCA1 • K562 NGENCM4O6HVD3W • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCM4O6HVD3W data_source ENCODE Download track Download number_of_intervals 415 bp_covered 168,017 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR223MLH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BRCA1 assay TF ChIP-seq file_format bed narrowPeak file_size 8,607 downloaded_date 06/12/2022 release_date 12/30/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF324AVH.bed.gz processed_file_md5 f728c65052b1ec8a66e9fc9cb1bfb151 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF324AVH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF324AVH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF324AVH/@@download/ENCFF324AVH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF324AVH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b62058b1ef1ceec1831a562fa172ad24 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE105342;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-05-18,2016-09-20;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq BRCA1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR223MLH] [Life stage: Adult] [TF ChIP-seq peaks]
BRCA1 • H1-hESC NGENCNHSRQR5LC • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq H1-hESC TF Show metadata Download track Track metadata identifier NGENCNHSRQR5LC data_source ENCODE Download track Download number_of_intervals 1,496 bp_covered 408,895 output_type conservative IDR thresholded peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000EBX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BRCA1 assay TF ChIP-seq file_format bed narrowPeak file_size 30,025 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF283ODC.bed.gz processed_file_md5 1470f08d8c4dd722428b049da851395f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF283ODC.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF283ODC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF283ODC/@@download/ENCFF283ODC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF283ODC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 647df5f40e7186e0186bf28884d4588e data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32737473;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002801,GEO:GSM935517;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2012-05-14,2011-10-29;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=embryonic cell,stem cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1, 2) TF ChIP-seq BRCA1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EBX] [Life stage: Embryonic] [TF ChIP-seq peaks]
BRCA1 • K562 NGENCSD7SJTNIO • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCSD7SJTNIO data_source ENCODE Download track Download number_of_intervals 192 bp_covered 77,360 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR223MLH biological_replicate 1 technical_replicate 1_1 antibody BRCA1 assay TF ChIP-seq file_format bed narrowPeak file_size 4,033 downloaded_date 06/12/2022 release_date 12/30/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF124WFG.bed.gz processed_file_md5 c6eae395a37b6b5992f27cbc6b2cd37a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF124WFG.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF124WFG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF124WFG/@@download/ENCFF124WFG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF124WFG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f3741aa98c554e5e28e11cbd3a120bb0 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE105342;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-05-18,2016-09-20;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq BRCA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR223MLH] [Life stage: Adult] [TF ChIP-seq peaks]
BRCA1 • H1-hESC NGENCT5HITQVLN • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq H1-hESC TF Show metadata Download track Track metadata identifier NGENCT5HITQVLN data_source ENCODE Download track Download number_of_intervals 1,942 bp_covered 542,695 output_type IDR thresholded peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000EBX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BRCA1 assay TF ChIP-seq file_format bed narrowPeak file_size 38,661 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF288NOI.bed.gz processed_file_md5 bb72ae476c3207e6aafeec727be961b6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF288NOI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF288NOI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF288NOI/@@download/ENCFF288NOI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF288NOI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 60c61b1b181ad4b9c2a715829dd9af62 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32737473;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002801,GEO:GSM935517;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2012-05-14,2011-10-29;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=embryonic cell,stem cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1, 2) TF ChIP-seq BRCA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EBX] [Life stage: Embryonic] [TF ChIP-seq peaks]
BRCA1 • HeLa-S3 NGENCTSKOOYH65 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HeLa-S3 TF Show metadata Download track Track metadata identifier NGENCTSKOOYH65 data_source ENCODE Download track Download number_of_intervals 5,892 bp_covered 1,574,773 output_type IDR thresholded peaks genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000EDB biological_replicate 1 technical_replicate 1_1 antibody BRCA1 assay TF ChIP-seq file_format bed narrowPeak file_size 115,896 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF314MEK.bed.gz processed_file_md5 aa1dc11ed3f2bd6cbdf65b9fb0b1af37 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF314MEK.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF314MEK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF314MEK/@@download/ENCFF314MEK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF314MEK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7852641d9d7bc8bbc8b71eabed44856f data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HeLa-S3;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 31 years;Reference=PMID:32728046;External_resources=GEO:GSM935552,UCSC-ENCODE-hg19:wgEncodeEH001814;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HeLa-S3;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE HeLa-S3 (repl. 1) TF ChIP-seq BRCA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EDB] [Life stage: Adult] [TF ChIP-seq peaks]
BRCA1 • GM12878 NGENCTYONYJL5R • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENCTYONYJL5R data_source ENCODE Download track Download number_of_intervals 1,552 bp_covered 410,550 output_type IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DZS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BRCA1 assay TF ChIP-seq file_format bed narrowPeak file_size 31,162 downloaded_date 06/12/2022 release_date 01/08/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF082DLE.bed.gz processed_file_md5 03a16de484404bacfba625cc8ba078a3 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF082DLE.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF082DLE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF082DLE/@@download/ENCFF082DLE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF082DLE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9d4fddd7596c6367f1b466099c7d4b9b data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM935377,UCSC-ENCODE-hg19:wgEncodeEH001830;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,B cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 1, 2) TF ChIP-seq BRCA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DZS] [Life stage: Adult] [TF ChIP-seq peaks]
BRCA1 • HepG2 NGENCUEQDYS3QX • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCUEQDYS3QX data_source ENCODE Download track Download number_of_intervals 1,391 bp_covered 393,350 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000EDY biological_replicate 2 technical_replicate 2_1 antibody BRCA1 assay TF ChIP-seq file_format bed narrowPeak file_size 27,904 downloaded_date 06/12/2022 release_date 01/05/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF722HDM.bed.gz processed_file_md5 ac5d76c20a6c6cc3ada3d2341b41c9c4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF722HDM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF722HDM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF722HDM/@@download/ENCFF722HDM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF722HDM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 253b4949423f800c98955b7d06b05a0e data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1,RegulomeDB_1_0,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_0;Life_stage_age=child 15 years;Reference=PMID:32728244;External_resources=GEO:GSM935609,UCSC-ENCODE-hg19:wgEncodeEH001859;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) TF ChIP-seq BRCA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EDY] [Life stage: Child] [TF ChIP-seq peaks]
BRCA1 • HeLa-S3 NGENCUQS6ZVK3U • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HeLa-S3 TF Show metadata Download track Track metadata identifier NGENCUQS6ZVK3U data_source ENCODE Download track Download number_of_intervals 9,452 bp_covered 2,754,005 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000EDB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BRCA1 assay TF ChIP-seq file_format bed narrowPeak file_size 187,853 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF669ASY.bed.gz processed_file_md5 7bbe357c874277874a83b49b14cde78e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF669ASY.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF669ASY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF669ASY/@@download/ENCFF669ASY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF669ASY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1bd8050b89ecaf13f2ad05782d916817 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HeLa-S3;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 31 years;Reference=PMID:32728046;External_resources=GEO:GSM935552,UCSC-ENCODE-hg19:wgEncodeEH001814;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HeLa-S3;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE HeLa-S3 (repl. 1, 2) TF ChIP-seq BRCA1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EDB] [Life stage: Adult] [TF ChIP-seq peaks]
BRCA1 • HepG2 NGENCUYCAZOQAK • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCUYCAZOQAK data_source ENCODE Download track Download number_of_intervals 2,050 bp_covered 585,357 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000EDY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BRCA1 assay TF ChIP-seq file_format bed narrowPeak file_size 40,885 downloaded_date 06/12/2022 release_date 01/05/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF748DCX.bed.gz processed_file_md5 46feb989c3029f19657a55d9be417a48 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF748DCX.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF748DCX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF748DCX/@@download/ENCFF748DCX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF748DCX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1d16ab23ef965f220b92d4125b51dfba data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1,RegulomeDB_1_0,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_0;Life_stage_age=child 15 years;Reference=PMID:32728244;External_resources=GEO:GSM935609,UCSC-ENCODE-hg19:wgEncodeEH001859;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq BRCA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EDY] [Life stage: Child] [TF ChIP-seq peaks]
BRCA1 • HepG2 NGENCZBTK3TLQD • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCZBTK3TLQD data_source ENCODE Download track Download number_of_intervals 5,162 bp_covered 2,692,112 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR343RJR biological_replicate 1 technical_replicate 1_1 antibody BRCA1 assay TF ChIP-seq file_format bed narrowPeak file_size 102,814 downloaded_date 06/12/2022 release_date 07/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF467OQY.bed.gz processed_file_md5 06f53ccb17c027eeed1e626040b329f1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF467OQY.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF467OQY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF467OQY/@@download/ENCFF467OQY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF467OQY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 33342a5f88ee9df782e4b3837c3447f8 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BRCA1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170476;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2020-07-08,2020-06-26;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) TF ChIP-seq BRCA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR343RJR] [Life stage: Child] [TF ChIP-seq peaks]
BRCA1 • GM12878 NGFTB2DTW3HCLY • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTB2DTW3HCLY data_source Factorbook Download track Download number_of_intervals 646 bp_covered 13,566 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DZS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BRCA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 13,329 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF303GOQ_GCRSCCYDRTGACGTCACRGR_sorted.bed.gz processed_file_md5 8a40e8b2e1b7c3849737273cc5a773c1 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF303GOQ_GCRSCCYDRTGACGTCACRGR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF303GOQ_GCRSCCYDRTGACGTCACRGR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF303GOQ_GCRSCCYDRTGACGTCACRGR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF303GOQ_GCRSCCYDRTGACGTCACRGR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 865e672f0d32014eea4dfd76e4e4073a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF303GOQ;ENCODE_bigBed_id=ENCFF082DLE;PMID=34755879;Motif_sequence=GCRSCCYDRTGACGTCACRGR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding BRCA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DZS] [TFBS]
BRCA1 • GM12878 NGFTB6IEQ57ZB5 • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTB6IEQ57ZB5 data_source Factorbook Download track Download number_of_intervals 1,816 bp_covered 27,240 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DZS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BRCA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 30,683 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF303GOQ_BTCTCGCGAGABYTS_sorted.bed.gz processed_file_md5 daa6226fc8e00040c29813e45acbb2a7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF303GOQ_BTCTCGCGAGABYTS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF303GOQ_BTCTCGCGAGABYTS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF303GOQ_BTCTCGCGAGABYTS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF303GOQ_BTCTCGCGAGABYTS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f54d0989c755db92539cdb63e5a946f1 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF303GOQ;ENCODE_bigBed_id=ENCFF082DLE;PMID=34755879;Motif_sequence=BTCTCGCGAGABYTS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding BRCA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DZS] [TFBS]
BRCA1 • H1-hESC NGFTBBSDZTUO35 • Factorbook34755879 Motif finding H1-hESC TFBS Show metadata Download track Track metadata identifier NGFTBBSDZTUO35 data_source Factorbook Download track Download number_of_intervals 2,149 bp_covered 42,980 output_type transcription factor binding sites all genome_build hg38 cell_type H1-hESC biosample_type Cell line biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000EBX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BRCA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 41,742 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF721TNS_SNVYTCTCGCGAGABYYSSS_sorted.bed.gz processed_file_md5 056a47b4420afd85000d4bde1dbb4a4e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF721TNS_SNVYTCTCGCGAGABYYSSS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF721TNS_SNVYTCTCGCGAGABYYSSS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF721TNS_SNVYTCTCGCGAGABYYSSS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF721TNS_SNVYTCTCGCGAGABYYSSS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 67a7bda56fbd8921b2e236b240b1cc37 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens H1;Original_cell_type=H1;Lab=Michael Snyder, Stanford;System=NR;ENCODE_BED_id=ENCFF721TNS;ENCODE_bigBed_id=ENCFF288NOI;PMID=34755879;Motif_sequence=SNVYTCTCGCGAGABYYSSS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook H1-hESC (repl. 1, 2) Motif finding BRCA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EBX] [TFBS]
BRCA1 • HeLa-S3 NGFTBC2F4QNKOD • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTBC2F4QNKOD data_source Factorbook Download track Download number_of_intervals 2,836 bp_covered 51,048 output_type transcription factor binding sites all genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000EDB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BRCA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 51,916 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF143SAQ_NVYTCTCGCGAGABYTSV_sorted.bed.gz processed_file_md5 15dbf91a135a2353ac1a4fe889a62750 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF143SAQ_NVYTCTCGCGAGABYTSV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF143SAQ_NVYTCTCGCGAGABYTSV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF143SAQ_NVYTCTCGCGAGABYTSV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF143SAQ_NVYTCTCGCGAGABYTSV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 afea6993545902ff3c516dcf2dac3a98 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3;Original_cell_type=HeLa-S3;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF143SAQ;ENCODE_bigBed_id=ENCFF218GPC;PMID=34755879;Motif_sequence=NVYTCTCGCGAGABYTSV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding BRCA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EDB] [Life stage: Adult] [TFBS]
BRCA1 • HeLa-S3 NGFTBDPRJVU4TB • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTBDPRJVU4TB data_source Factorbook Download track Download number_of_intervals 20 bp_covered 420 output_type transcription factor binding sites significant genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000EDB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BRCA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 718 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF143SAQ_GCGCSCBBYKRTGACGTCACG_filtered.bed.gz processed_file_md5 98b27546aca8e5f0f657e53998b78a65 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF143SAQ_GCGCSCBBYKRTGACGTCACG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF143SAQ_GCGCSCBBYKRTGACGTCACG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF143SAQ_GCGCSCBBYKRTGACGTCACG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF143SAQ_GCGCSCBBYKRTGACGTCACG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 99f7d76bed7bcae9f38645a13ed10d06 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3;Original_cell_type=HeLa-S3;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF143SAQ;ENCODE_bigBed_id=ENCFF218GPC;PMID=34755879;Motif_sequence=GCGCSCBBYKRTGACGTCACG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding BRCA1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000EDB] [Life stage: Adult] [TFBS]
BRCA1 • H1-hESC NGFTBE2YOYIE4P • Factorbook34755879 Motif finding H1-hESC TFBS Show metadata Download track Track metadata identifier NGFTBE2YOYIE4P data_source Factorbook Download track Download number_of_intervals 34 bp_covered 714 output_type transcription factor binding sites significant genome_build hg38 cell_type H1-hESC biosample_type Cell line biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000EBX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BRCA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 995 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF721TNS_GCGCSCSBYKRTGACGTCACG_filtered.bed.gz processed_file_md5 4affb10fb096fe6e574bcc0a9df70996 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF721TNS_GCGCSCSBYKRTGACGTCACG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF721TNS_GCGCSCSBYKRTGACGTCACG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF721TNS_GCGCSCSBYKRTGACGTCACG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF721TNS_GCGCSCSBYKRTGACGTCACG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 608ca8b420f110fc5cfa01d915b42182 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens H1;Original_cell_type=H1;Lab=Michael Snyder, Stanford;System=NR;ENCODE_BED_id=ENCFF721TNS;ENCODE_bigBed_id=ENCFF288NOI;PMID=34755879;Motif_sequence=GCGCSCSBYKRTGACGTCACG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook H1-hESC (repl. 1, 2) Motif finding BRCA1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000EBX] [TFBS]