Jurkat NGADBEQCTK6XX3 • ATACdb v1.03 ATAC-seq Jurkat TFBS Show metadata identifier NGADBEQCTK6XX3 data_source ATACdb_v1.03 Download track Download number_of_intervals 277,558 bp_covered 3,841,835 output_type transcription factor binding sites genome_build hg38 cell_type Jurkat biosample_type Cell line biosample_term_id EFO:0002796 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 9,802,735 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0890_hg38_motif_binding_sites.bed.gz processed_file_md5 c9ae5de53388ae70eb354d2ce4b568c3 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0890_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0890_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0890;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=Jurkat;Cancer_Type=Leukemia;Region_Number=69263;Length=50922.06 kb;GEO_SRA=SRR5063991;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Jurkat ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Cerebellum NGADBEQWLLIJWK • ATACdb v1.03 ATAC-seq Cerebellum Accessible chromatin Show metadata identifier NGADBEQWLLIJWK data_source ATACdb_v1.03 Download track Download number_of_intervals 18,203 bp_covered 6,560,515 output_type accessible chromatin region genome_build hg38 cell_type Cerebellum biosample_type Tissue biosample_term_id UBERON:0002037 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 579,880 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1459_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 d81526903a7e64c4ca2002fc552813bc wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1459_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1459_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1459.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1459.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 59e42236a974f5b4b9d04ec3ddf1b15d data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1459;Biosample_Type=Tissue;Tissue_Type=Brain;Biosample_Name=cerebellum;Cancer_Type=Other;Region_Number=18278;Length=6606.349 kb;GEO_SRA=SRR6310011;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system_category Nervous life_stage Unknown track_name ATACdb_v1.03 Cerebellum ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
hESC NGADBERQW2EX55 • ATACdb v1.03 ATAC-seq hESC Accessible chromatin Show metadata identifier NGADBERQW2EX55 data_source ATACdb_v1.03 Download track Download number_of_intervals 23,103 bp_covered 13,211,743 output_type accessible chromatin region genome_build hg38 cell_type hESC biosample_type Stem cell biosample_term_id CL:0002322 tissue_category Stem Cell encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 750,519 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0423_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 14b52e11d173f9320630ebe43b3a5fde wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0423_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0423_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0423.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0423.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 afde699769a6968c41452d54189a5c04 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0423;Biosample_Type=Stem Cell;Tissue_Type=Embryo;Biosample_Name=HESC;Cancer_Type=Normal;Region_Number=23176;Length=13265.263 kb;GEO_SRA=SRR6206773;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system_category Stem Cell life_stage Embryonic track_name ATACdb_v1.03 hESC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic] [Accessible chromatin]
J-Lat A72 NGADBERRFTBA5J • ATACdb v1.03 ATAC-seq J-Lat A72 Accessible chromatin Show metadata identifier NGADBERRFTBA5J data_source ATACdb_v1.03 Download track Download number_of_intervals 27,653 bp_covered 10,273,416 output_type accessible chromatin region genome_build hg38 cell_type J-Lat A72 biosample_type Cell line biosample_term_id Not available tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 885,394 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0943_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 6507a384b38c8d9692476e668cad6efc wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0943_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0943_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0943.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0943.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 5699374436ca90e3996865dcfda21ef4 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0943;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=J-Lat-A72;Cancer_Type=HIV-1;Region_Number=27748;Length=10292.759 kb;GEO_SRA=SRR5720372;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GA system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 J-Lat A72 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Prefrontal cortex NGADBERTRWAVHW • ATACdb v1.03 ATAC-seq Prefrontal cortex TFBS Show metadata identifier NGADBERTRWAVHW data_source ATACdb_v1.03 Download track Download number_of_intervals 87,012 bp_covered 1,182,532 output_type transcription factor binding sites genome_build hg38 cell_type Prefrontal cortex biosample_type Not applicable biosample_term_id UBERON:0000451 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 3,148,162 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0535_hg38_motif_binding_sites.bed.gz processed_file_md5 6f3a26086cd5a8294aa401a78c765725 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0535_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0535_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0535;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=medial orbitofrontal cortex;Cancer_Type=Other;Region_Number=41994;Length=14989.367 kb;GEO_SRA=SRR5367819;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisan system_category Nervous life_stage Unknown track_name ATACdb_v1.03 Prefrontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
GM12878 NGADBESA4K5RHO • ATACdb v1.03 ATAC-seq GM12878 TFBS Show metadata identifier NGADBESA4K5RHO data_source ATACdb_v1.03 Download track Download number_of_intervals 47,329 bp_covered 631,749 output_type transcription factor binding sites genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 1,496,063 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1113_hg38_motif_binding_sites.bed.gz processed_file_md5 642a1345821fd33ac38d04d84e0a0d80 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1113_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1113_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1113;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=GM12878;Cancer_Type=Normal;Region_Number=9686;Length=4944.317 kb;GEO_SRA=SRR3336951;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 GM12878 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Temporal cortex NGADBESEAVL3EC • ATACdb v1.03 ATAC-seq Temporal cortex TFBS Show metadata identifier NGADBESEAVL3EC data_source ATACdb_v1.03 Download track Download number_of_intervals 46,920 bp_covered 620,913 output_type transcription factor binding sites genome_build hg38 cell_type Temporal cortex biosample_type Not applicable biosample_term_id UBERON:0016538 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 1,518,233 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0496_hg38_motif_binding_sites.bed.gz processed_file_md5 1936453e13e51b4f72d9c92bf6f24173 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0496_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0496_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0496;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=posterior superior temporal cortex;Cancer_Type=Other;Region_Number=10776;Length=5495.911 kb;GEO_SRA=SRR5367765;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf system_category Nervous life_stage Unknown track_name ATACdb_v1.03 Temporal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Glioblastoma NGADBESGUYCCOX • ATACdb v1.03 ATAC-seq Glioblastoma TFBS Show metadata identifier NGADBESGUYCCOX data_source ATACdb_v1.03 Download track Download number_of_intervals 1,593 bp_covered 28,153 output_type transcription factor binding sites genome_build hg38 cell_type Glioblastoma biosample_type Stem cell biosample_term_id NCIT:C3058 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 29,871 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1228_hg38_motif_binding_sites.bed.gz processed_file_md5 8a00e85a9f5d2337ced6c7899b11e7b8 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1228_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1228_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1228;Biosample_Type=Stem Cell;Tissue_Type=Other;Biosample_Name=Glioblastoma cell;Cancer_Type=Glioblastoma;Region_Number=310;Length=108.479 kb;GEO_SRA=SRR1957109;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwan system_category Nervous life_stage Unknown track_name ATACdb_v1.03 Glioblastoma ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
T regulatory cell NGADBESMPCKYPJ • ATACdb v1.03 ATAC-seq T regulatory cell Accessible chromatin Show metadata identifier NGADBESMPCKYPJ data_source ATACdb_v1.03 Download track Download number_of_intervals 8,934 bp_covered 3,148,445 output_type accessible chromatin region genome_build hg38 cell_type T regulatory cell biosample_type Primary cell biosample_term_id CL:0000815 tissue_category Immune encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 287,327 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0917_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 8af37007f77d20e3d2d0b0b5f294b792 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0917_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0917_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0917.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0917.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 fde18e527d45f0568bac25d51df32d2f data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0917;Biosample_Type=Primary Cell;Tissue_Type=Other;Biosample_Name=Treg cell;Cancer_Type=Other;Region_Number=8960;Length=3156.058 kb;GEO_SRA=SRR5831527;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/G system_category Lymphatic life_stage Unknown track_name ATACdb_v1.03 T regulatory cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
CD8+ naive T cell NGADBESW3KAJKH • ATACdb v1.03 ATAC-seq CD8+ naive T cell TFBS Show metadata identifier NGADBESW3KAJKH data_source ATACdb_v1.03 Download track Download number_of_intervals 199,638 bp_covered 2,714,834 output_type transcription factor binding sites genome_build hg38 cell_type CD8+ naive T cell biosample_type Primary cell biosample_term_id CL:0000900 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 6,680,910 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0213_hg38_motif_binding_sites.bed.gz processed_file_md5 9364864903f3cf7a736dff0b79e2cc9c wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0213_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0213_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0213;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Naive_CD8_T;Cancer_Type=Normal;Region_Number=55448;Length=24700.429 kb;GEO_SRA=SRR7650743;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 CD8+ naive T cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
FT190 NGADBETQWQJ6VN • ATACdb v1.03 ATAC-seq FT190 TFBS Show metadata identifier NGADBETQWQJ6VN data_source ATACdb_v1.03 Download track Download number_of_intervals 103,292 bp_covered 1,386,062 output_type transcription factor binding sites genome_build hg38 cell_type FT190 biosample_type Cell line biosample_term_id Not available tissue_category Female Reproductive encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 3,540,094 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1364_hg38_motif_binding_sites.bed.gz processed_file_md5 8153280a4a0e2395d4c4766ad91002bf wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1364_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1364_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1364;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=FT190;Cancer_Type=Ovarion cancer;Region_Number=27236;Length=16431.814 kb;GEO_SRA=GSM3462381;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.o system_category Reproductive life_stage Unknown track_name ATACdb_v1.03 FT190 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
CD45RA+ CCR7+ CD8 T cell NGADBEU33FIF3B • ATACdb v1.03 ATAC-seq CD45RA+ CCR7+ CD8 T cell Accessible chromatin Show metadata identifier NGADBEU33FIF3B data_source ATACdb_v1.03 Download track Download number_of_intervals 7,875 bp_covered 2,554,182 output_type accessible chromatin region genome_build hg38 cell_type CD45RA+ CCR7+ CD8 T cell biosample_type Primary cell biosample_term_id CL:0000900 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 251,489 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0829_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 c33efd6dd26fecf695b53bf7c337e814 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0829_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0829_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0829.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0829.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 018eb7af536ea70c0256fffdf5647e92 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0829;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=YF;Cancer_Type=The Yellow fever;Region_Number=7899;Length=2558.78 kb;GEO_SRA=SRR5839481;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.or system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 CD45RA+ CCR7+ CD8 T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Naive T effector cell NGADBEUSWAG2JJ • ATACdb v1.03 ATAC-seq Naive T effector cell TFBS Show metadata identifier NGADBEUSWAG2JJ data_source ATACdb_v1.03 Download track Download number_of_intervals 206,978 bp_covered 2,814,643 output_type transcription factor binding sites genome_build hg38 cell_type Naive T effector cell biosample_type Not applicable biosample_term_id Not available tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 6,987,540 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0266_hg38_motif_binding_sites.bed.gz processed_file_md5 001649920e79f689105e9ab250d0a22c wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0266_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0266_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0266;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Naive_Teffs;Cancer_Type=Normal;Region_Number=50343;Length=29240.527 kb;GEO_SRA=SRR7650797;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Naive T effector cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
GM12878 and HL-60 NGADBEVMMTCEM4 • ATACdb v1.03 ATAC-seq GM12878 and HL-60 TFBS Show metadata identifier NGADBEVMMTCEM4 data_source ATACdb_v1.03 Download track Download number_of_intervals 28,704 bp_covered 391,776 output_type transcription factor binding sites genome_build hg38 cell_type GM12878 and HL-60 biosample_type Cell line biosample_term_id Not available tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 964,174 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1302_hg38_motif_binding_sites.bed.gz processed_file_md5 f1d5c9db323d9e49c4990f1db9f05463 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1302_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1302_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1302;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=Mixture of GM12878 and HL-60;Cancer_Type=Normal;Region_Number=7633;Length=3427.838 kb;GEO_SRA=SRR1947693;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.l system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 GM12878 and HL-60 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
HT1080 NGADBEWUVPPRBY • ATACdb v1.03 ATAC-seq HT1080 Accessible chromatin Show metadata identifier NGADBEWUVPPRBY data_source ATACdb_v1.03 Download track Download number_of_intervals 59,911 bp_covered 27,502,167 output_type accessible chromatin region genome_build hg38 cell_type HT1080 biosample_type Cell line biosample_term_id EFO:0002059 tissue_category Connective Tissue encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,934,749 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1118_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 d752eb0945b2d0f4d1457ba3b689e8f7 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1118_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1118_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1118.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1118.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 3bf23d8f3cd9957e17d5268a5b612ef5 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1118;Biosample_Type=Cell Line;Tissue_Type=Connective tissue;Biosample_Name=HT1080;Cancer_Type=Fibroscarcoma;Region_Number=59973;Length=27499.895 kb;GEO_SRA=SRR2999316;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.li system_category Skeletal life_stage Unknown track_name ATACdb_v1.03 HT1080 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
PC-9 NGADBEXV7LWYAW • ATACdb v1.03 ATAC-seq PC-9 Accessible chromatin Show metadata identifier NGADBEXV7LWYAW data_source ATACdb_v1.03 Download track Download number_of_intervals 63,992 bp_covered 22,989,492 output_type accessible chromatin region genome_build hg38 cell_type PC-9 biosample_type Cell line biosample_term_id EFO:0002847 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 2,015,345 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0996_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 831ccbc57e575450cafcd3a27fd1f720 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0996_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0996_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0996.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0996.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 8595c0a0b94e7af58ecc3d85cc5e3398 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0996;Biosample_Type=Cell Line;Tissue_Type=Lung;Biosample_Name=PC-9;Cancer_Type=Lung cancer;Region_Number=64091;Length=23045.826 kb;GEO_SRA=SRR2927085;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GA system_category Respiratory life_stage Unknown track_name ATACdb_v1.03 PC-9 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Peripheral mononucleated cell NGADBEYEJGSIER • ATACdb v1.03 ATAC-seq Peripheral mononucleated cell TFBS Show metadata identifier NGADBEYEJGSIER data_source ATACdb_v1.03 Download track Download number_of_intervals 161,147 bp_covered 2,168,352 output_type transcription factor binding sites genome_build hg38 cell_type Peripheral mononucleated cell biosample_type Cell line biosample_term_id CL:2000001 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 5,059,615 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1439_hg38_motif_binding_sites.bed.gz processed_file_md5 4a10a856f51784bb21dbea808603432f wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1439_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1439_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1439;Biosample_Type=Cell Line;Tissue_Type=Peripheral blood;Biosample_Name=JHU-06;Cancer_Type=Leukemia;Region_Number=23158;Length=17773.676 kb;GEO_SRA=SRR5785408;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwan system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Peripheral mononucleated cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
TOV-21G NGADBEYXSBYMCC • ATACdb v1.03 ATAC-seq TOV-21G Accessible chromatin Show metadata identifier NGADBEYXSBYMCC data_source ATACdb_v1.03 Download track Download number_of_intervals 24,913 bp_covered 10,154,456 output_type accessible chromatin region genome_build hg38 cell_type TOV-21G biosample_type Cell line biosample_term_id Not available tissue_category Female Reproductive encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 803,987 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0871_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 4e9c3d96b151e83337c52cbccf91c9f0 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0871_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0871_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0871.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0871.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 60de4a6073e4063ec336df51c923c827 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0871;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=TOV-21G;Cancer_Type=Ovarion cancer;Region_Number=24970;Length=10185.53 kb;GEO_SRA=SRR5876661;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab. system_category Reproductive life_stage Unknown track_name ATACdb_v1.03 TOV-21G ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Amygdala NGADBEZA2BDEP4 • ATACdb v1.03 ATAC-seq Amygdala TFBS Show metadata identifier NGADBEZA2BDEP4 data_source ATACdb_v1.03 Download track Download number_of_intervals 90,063 bp_covered 1,225,924 output_type transcription factor binding sites genome_build hg38 cell_type Amygdala biosample_type Not applicable biosample_term_id UBERON:0001876 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 3,287,150 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0529_hg38_motif_binding_sites.bed.gz processed_file_md5 6c477f853e9ae611b7d53404604fa5a2 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0529_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0529_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0529;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=basal amygdala;Cancer_Type=Other;Region_Number=43906;Length=16086.475 kb;GEO_SRA=SRR5367813;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/G system_category Nervous life_stage Unknown track_name ATACdb_v1.03 Amygdala ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
HCASMC NGADBEZKSVHORW • ATACdb v1.03 ATAC-seq HCASMC TFBS Show metadata identifier NGADBEZKSVHORW data_source ATACdb_v1.03 Download track Download number_of_intervals 254,950 bp_covered 3,488,203 output_type transcription factor binding sites genome_build hg38 cell_type HCASMC biosample_type Cell line biosample_term_id CL:0002592 tissue_category Blood Vessel encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 9,349,619 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0403_hg38_motif_binding_sites.bed.gz processed_file_md5 b3534e44de846dac34b336d9e7f54156 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0403_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0403_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0403;Biosample_Type=Cell Line;Tissue_Type=Coronary artery smooth muscle;Biosample_Name=200212;Cancer_Type=Coronary artery disease;Region_Number=90752;Length=52655.728 kb;GEO_SRA=SRR7064068;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowle system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 HCASMC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]