H3K27ac • Brain NGENCDC64JEAWP • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Brain Histone Show metadata Download track Track metadata identifier NGENCDC64JEAWP data_source ENCODE Download track Download number_of_intervals 132,145 bp_covered 61,782,450 output_type pseudoreplicated peaks genome_build hg38 cell_type Brain biosample_type Organoid biosample_term_id UBERON:0000955 tissue_category Brain encode_experiment_id ENCSR978LBY biological_replicate 3 technical_replicate 3_1, 3_2 antibody H3K27ac assay Mint-ChIP-seq file_format bed narrowPeak file_size 3,418,301 downloaded_date 06/12/2022 release_date 05/11/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF140VYT.bed.gz processed_file_md5 3f5c849757a7422616ea03d17fb726e3 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF140VYT.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF140VYT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF140VYT/@@download/ENCFF140VYT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF140VYT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 269a53fc01945e843a6154bac3a44a69 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens brain organoid, 90 days post differentiation;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE178012;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-14,2020-07-06;Submitted_track_name=rep3-pr1_vs_rep3-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=brain;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000955;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Brain (repl. 3) Mint-ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR978LBY] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Epithelial cell NGENCDCA6ZS7FL • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Epithelial cell Histone Show metadata Download track Track metadata identifier NGENCDCA6ZS7FL data_source ENCODE Download track Download number_of_intervals 60,122 bp_covered 119,973,870 output_type pseudoreplicated peaks genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Male Reproductive encode_experiment_id ENCSR910PDW biological_replicate 1 technical_replicate 1_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,818,069 downloaded_date 06/12/2022 release_date 09/17/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF044ONP.bed.gz processed_file_md5 d6123193a99b1ca912988e91190f2234 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF044ONP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF044ONP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF044ONP/@@download/ENCFF044ONP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF044ONP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e80de1a2d7ab28b6d567e92f4f90aba4 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens epithelial cell of prostate male;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ccre_inputv2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSE105828,SCREEN-GRCh38:epithelial_cell_of_prostate_male;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-03-03,2017-01-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=epithelial cell of prostate;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=prostate epithelial cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002231;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Unknown track_name ENCODE Epithelial cell (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR910PDW] [Histone ChIP-seq peaks]
H3K27ac • BLaER1 NGENCDCLQ6HNPH • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENCDCLQ6HNPH data_source ENCODE Download track Download number_of_intervals 63,621 bp_covered 85,966,754 output_type pseudoreplicated peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR285NFQ biological_replicate 1 technical_replicate 1_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,776,931 downloaded_date 05/15/2024 release_date 02/16/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF149TNG.bed.gz processed_file_md5 d2f542443be11299939497f9c9db9755 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF149TNG.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF149TNG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF149TNG/@@download/ENCFF149TNG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF149TNG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c4550eb0882d203c1006962919abf5ca data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 36 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE256603;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR285NFQ] [Histone ChIP-seq peaks]
H3K27ac • C4-2B NGENCDCRU6HFRA • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq C4-2B Histone Show metadata Download track Track metadata identifier NGENCDCRU6HFRA data_source ENCODE Download track Download number_of_intervals 52,382 bp_covered 69,551,005 output_type pseudoreplicated peaks genome_build hg38 cell_type C4-2B biosample_type Cell line biosample_term_id EFO:0006365 tissue_category Male Reproductive encode_experiment_id ENCSR279KIX biological_replicate 2 technical_replicate 2_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,568,948 downloaded_date 06/12/2022 release_date 09/17/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF632MRL.bed.gz processed_file_md5 ed2925c2b06e692d17cccfca2e320d96 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF632MRL.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF632MRL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF632MRL/@@download/ENCFF632MRL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF632MRL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2ef8ee77046d8f386af35edb5d160e06 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens C4-2B;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,ccre_inputv2,ENCYCLOPEDIAv2;Life_stage_age=adult 50 years;Reference=PMID:32728046;External_resources=SCREEN-GRCh38:C4-2B,GEO:GSE105424;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-03-16,2017-02-02;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=C4-2B;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0006365;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Adult track_name ENCODE C4-2B (repl. 2) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR279KIX] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Gastroesophageal sphincter NGENCDCUXTJDRF • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Gastroesophageal sphincter Histone Show metadata Download track Track metadata identifier NGENCDCUXTJDRF data_source ENCODE Download track Download number_of_intervals 68,084 bp_covered 143,754,555 output_type pseudoreplicated peaks genome_build hg38 cell_type Gastroesophageal sphincter biosample_type Tissue biosample_term_id UBERON:0004550 tissue_category Digestive encode_experiment_id ENCSR600TOW biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,851,834 downloaded_date 06/12/2022 release_date 09/23/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF874BCQ.bed.gz processed_file_md5 3dd6b91cdd39124b4ab9894281844da7 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF874BCQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF874BCQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF874BCQ/@@download/ENCFF874BCQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF874BCQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0759d599345d460cbca66e3c31296e76 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens gastroesophageal sphincter tissue male adult (37 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx;Life_stage_age=adult 37 years;Reference=NR;External_resources=GEO:GSE139706;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2019-08-01,2019-07-19;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=gastroesophageal sphincter;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system,musculature;ENCODE_biosample_term_synonyms=inferior esophageal sphincter,gastroesophageal sphincter,gastroesophageal sphincter muscle,cardiac sphincter;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0004550;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE Gastroesophageal sphincter (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR600TOW] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Adrenal gland NGENCDD3PCCWM7 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Adrenal gland Histone Show metadata Download track Track metadata identifier NGENCDD3PCCWM7 data_source ENCODE Download track Download number_of_intervals 23,395 bp_covered 24,475,195 output_type pseudoreplicated peaks genome_build hg38 cell_type Adrenal gland biosample_type Tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id ENCSR177QFY biological_replicate 2 technical_replicate 2_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 617,989 downloaded_date 06/12/2022 release_date 09/17/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF375NZV.bed.gz processed_file_md5 88970f65aa3c3ac8032fd42def005950 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF375NZV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF375NZV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF375NZV/@@download/ENCFF375NZV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF375NZV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 63c057328b5308e12bff524320e9636d data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens adrenal gland tissue male adult (54 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ccre_inputv2,ENTEx,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 54 years;Reference=PMID:32728046;External_resources=SCREEN-GRCh38:adrenal_gland_male_adult_54_years,GEO:GSE95966;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-24,2016-06-30;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=adrenal gland;ENCODE_cell_slims=NR;ENCODE_system_slims=endocrine system;ENCODE_biosample_term_synonyms=glandula suprarenalis,glandula adrenalis;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002369;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Endocrine life_stage Adult track_name ENCODE Adrenal gland (repl. 2) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR177QFY] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • CD8+ alpha-beta memory T cell NGENCDDBZTZJW2 • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq CD8+ alpha-beta memory T cell Histone Show metadata Download track Track metadata identifier NGENCDDBZTZJW2 data_source ENCODE Download track Download number_of_intervals 110,991 bp_covered 79,574,930 output_type pseudoreplicated peaks genome_build hg38 cell_type CD8+ alpha-beta memory T cell biosample_type Primary cell biosample_term_id CL:0000907 tissue_category Blood encode_experiment_id ENCSR976RWL biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27ac assay Mint-ChIP-seq file_format bed narrowPeak file_size 3,056,793 downloaded_date 06/12/2022 release_date 05/06/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF833JFG.bed.gz processed_file_md5 54996b9bcd3a90a37b1122d5fbe88a26 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF833JFG.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF833JFG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF833JFG/@@download/ENCFF833JFG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF833JFG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 838c0dfcc7b10bc1f8b917d9b6ff603b data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE177995;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-14,2021-04-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=activated CD8-positive, alpha-beta memory T cell;ENCODE_cell_slims=T cell,CD8+ T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0000669;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE CD8+ alpha-beta memory T cell (repl. 1) Mint-ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR976RWL] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • ACC112 NGENCDDHB7ZUGL • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq ACC112 Histone Show metadata Download track Track metadata identifier NGENCDDHB7ZUGL data_source ENCODE Download track Download number_of_intervals 69,755 bp_covered 97,062,830 output_type replicated peaks genome_build hg38 cell_type ACC112 biosample_type Cell line biosample_term_id EFO:0007070 tissue_category Digestive encode_experiment_id ENCSR059MVB biological_replicate 1, 2 technical_replicate 1_1, 2_1, 2_2 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 2,082,188 downloaded_date 06/12/2022 release_date 10/10/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF096JLX.bed.gz processed_file_md5 04f868b64c9d11f4b16432fe4eb58dfb wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF096JLX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF096JLX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF096JLX/@@download/ENCFF096JLX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF096JLX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a742201b79aae61137454a3b17228820 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac replicated peaks track_description version=2024;Biosample_summary=Homo sapiens ACC112;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ccre_inputv2,ENCYCLOPEDIAv2,ccre_inputv1,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 70 years;Reference=PMID:32728046;External_resources=GEO:GSE95903,SCREEN-GRCh38:ACC112;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-09-04,2016-10-27;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=ACC112;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digestive system;ENCODE_biosample_term_synonyms=UTSW-ACC112;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007070;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE ACC112 (repl. 1, 2) Histone ChIP-seq H3K27ac replicated peaks (narrowPeak) [Experiment: ENCSR059MVB] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • CD4+ alpha-beta memory T cell NGENCDEY7A6A6R • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq CD4+ alpha-beta memory T cell Histone Show metadata Download track Track metadata identifier NGENCDEY7A6A6R data_source ENCODE Download track Download number_of_intervals 190,746 bp_covered 99,918,660 output_type pseudoreplicated peaks genome_build hg38 cell_type CD4+ alpha-beta memory T cell biosample_type Primary cell biosample_term_id CL:0000897 tissue_category Blood encode_experiment_id ENCSR696DVE biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27ac assay Mint-ChIP-seq file_format bed narrowPeak file_size 4,555,495 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF326ZDZ.bed.gz processed_file_md5 e7e06dc13144d2844d731d2d7e3febc2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF326ZDZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF326ZDZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF326ZDZ/@@download/ENCFF326ZDZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF326ZDZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0295428fb361d3b4d43f9d7ea5f252f0 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens CD4-positive, alpha-beta memory T cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=YaleImmuneCells;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE177778;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-09-06,2020-08-04;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=CD4-positive, alpha-beta memory T cell;ENCODE_cell_slims=T cell,leukocyte,CD4+ T cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=CD4-positive, alpha-beta memory T lymphocyte,CD4-positive, alpha-beta memory T-lymphocyte,CD4-positive, alpha-beta memory T-cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000897;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE CD4+ alpha-beta memory T cell (repl. 1) Mint-ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR696DVE] [Histone ChIP-seq peaks]
H3K27ac • Lower motor neurons NGENCDG776VER3 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Lower motor neurons Histone Show metadata Download track Track metadata identifier NGENCDG776VER3 data_source ENCODE Download track Download number_of_intervals 68,172 bp_covered 88,899,522 output_type replicated peaks genome_build hg38 cell_type Lower motor neurons biosample_type In vitro differentiated cells biosample_term_id CL:0000100 tissue_category Brain encode_experiment_id ENCSR425FUS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 2,000,302 downloaded_date 06/12/2022 release_date 08/18/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF436XYA.bed.gz processed_file_md5 b78de8d7b469702d143280a6b74e4b39 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF436XYA.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF436XYA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF436XYA/@@download/ENCFF436XYA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF436XYA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 42b668316872d75eeac77a081578cb80 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac replicated peaks track_description version=2024;Biosample_summary=Homo sapiens from a donor with amyotrophic lateral sclerosis| motor neuron;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 49 years;Reference=PMID:35045337;External_resources=GEO:GSE187594;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-08-24,2021-12-15;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=motor neuron;ENCODE_cell_slims=neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=motoneuron;Analysis_title=ENCODE4 v1.9.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000100;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Lower motor neurons (repl. 1, 2) Histone ChIP-seq H3K27ac replicated peaks (narrowPeak) [Experiment: ENCSR425FUS] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Caco-2 NGENCDGCDWTJSO • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Caco-2 Histone Show metadata Download track Track metadata identifier NGENCDGCDWTJSO data_source ENCODE Download track Download number_of_intervals 86,873 bp_covered 107,258,788 output_type pseudoreplicated peaks genome_build hg38 cell_type Caco-2 biosample_type Cell line biosample_term_id EFO:0001099 tissue_category Digestive encode_experiment_id ENCSR571QQB biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27ac assay Mint-ChIP-seq file_format bed narrowPeak file_size 2,462,235 downloaded_date 05/15/2024 release_date 07/01/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF054OPH.bed.gz processed_file_md5 68e3da14053943a17ba3dbe3cdf886fa wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF054OPH.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF054OPH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF054OPH/@@download/ENCFF054OPH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF054OPH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a6154665685d3694f333368f2665ea75 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens Caco-2;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 72 years;Reference=NR;External_resources=GEO:GSE209066;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-04-27,2022-04-26;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=Caco-2;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=Caco2;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001099;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE Caco-2 (repl. 1) Mint-ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR571QQB] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • B cell NGENCDIEQZSK2B • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq B cell Histone Show metadata Download track Track metadata identifier NGENCDIEQZSK2B data_source ENCODE Download track Download number_of_intervals 45,399 bp_covered 67,027,658 output_type pseudoreplicated peaks genome_build hg38 cell_type B cell biosample_type Primary cell biosample_term_id CL:0000236 tissue_category Immune encode_experiment_id ENCSR000AUP biological_replicate 1 technical_replicate 1_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,236,094 downloaded_date 06/12/2022 release_date 09/30/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF934XET.bed.gz processed_file_md5 6013f76dc75d19bb68aaf79cfc39da1c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF934XET.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF934XET.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF934XET/@@download/ENCFF934XET.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF934XET.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f9ee2c50088a8b35ad7ede9234fec1d7 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens B cell female adult (27 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ccre_inputv2,ENCYCLOPEDIAv2;Life_stage_age=adult 27 years;Reference=PMID:32728046;External_resources=SCREEN-GRCh38:B_cell_female_adult,UCSC-ENCODE-hg19:wgEncodeEH003125,GEO:GSM1003459;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-08-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=B cell;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=B-cell,B lymphocyte,B-lymphocyte;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000236;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE B cell (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AUP] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • CD14+ monocyte NGENCDIG2Y6DZU • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq CD14+ monocyte Histone Show metadata Download track Track metadata identifier NGENCDIG2Y6DZU data_source ENCODE Download track Download number_of_intervals 188,830 bp_covered 88,670,720 output_type pseudoreplicated peaks genome_build hg38 cell_type CD14+ monocyte biosample_type Primary cell biosample_term_id CL:0001054 tissue_category Blood encode_experiment_id ENCSR319HLH biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27ac assay Mint-ChIP-seq file_format bed narrowPeak file_size 4,641,219 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF962YYB.bed.gz processed_file_md5 19c458dccd80b685f2c5c154f1847e75 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF962YYB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF962YYB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF962YYB/@@download/ENCFF962YYB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF962YYB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4c6dafc22037a65487efd1adaacfb90b data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens CD14-positive monocyte;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=YaleImmuneCells;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE177128;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-07-30,2020-07-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=CD14-positive monocyte;ENCODE_cell_slims=leukocyte,myeloid cell,monocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0001054;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE CD14+ monocyte (repl. 1) Mint-ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR319HLH] [Histone ChIP-seq peaks]
H3K27ac • Nephron NGENCDJ2VHFFBW • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Nephron Histone Show metadata Download track Track metadata identifier NGENCDJ2VHFFBW data_source ENCODE Download track Download number_of_intervals 300,066 bp_covered 136,080,302 output_type pseudoreplicated peaks genome_build hg38 cell_type Nephron biosample_type Organoid biosample_term_id UBERON:0001285 tissue_category Kidney encode_experiment_id ENCSR283SJF biological_replicate 2 technical_replicate 2_1, 2_2 antibody H3K27ac assay Mint-ChIP-seq file_format bed narrowPeak file_size 8,323,144 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF019NJD.bed.gz processed_file_md5 5392563cff54083a4ab1f42554b1b6dd wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF019NJD.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF019NJD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF019NJD/@@download/ENCFF019NJD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF019NJD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 862cc47c7a0b0146acba41bb7cd23bba data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens nephron organoid, 35 days post differentiation;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE176995;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-07-30,2020-07-06;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=nephron;ENCODE_cell_slims=NR;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001285;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Renal life_stage Embryonic track_name ENCODE Nephron (repl. 2) Mint-ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR283SJF] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27ac • Pancreas NGENCDKJB766QC • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Pancreas Histone Show metadata Download track Track metadata identifier NGENCDKJB766QC data_source ENCODE Download track Download number_of_intervals 47,922 bp_covered 76,287,989 output_type replicated peaks genome_build hg38 cell_type Pancreas biosample_type Tissue biosample_term_id UBERON:0001264 tissue_category Pancreas encode_experiment_id ENCSR029SIG biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1, 2_2 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,324,128 downloaded_date 06/12/2022 release_date 04/28/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF815RJA.bed.gz processed_file_md5 c811940cc0ade1f96925c6db75ece6e9 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF815RJA.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF815RJA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF815RJA/@@download/ENCFF815RJA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF815RJA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 707c7109ff27869be141807bf4a2d611 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac replicated peaks track_description version=2024;Biosample_summary=Homo sapiens pancreas tissue female child (16 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=child 16 years;Reference=NR;External_resources=GEO:GSE174917;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-09-10,2020-07-06;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=pancreas;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001264;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Endocrine life_stage Child track_name ENCODE Pancreas (repl. 1, 2) Histone ChIP-seq H3K27ac replicated peaks (narrowPeak) [Experiment: ENCSR029SIG] [Life stage: Child] [Histone ChIP-seq peaks]
H3K27ac • Epithelial cell NGENCDLM3HYMJD • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Epithelial cell Histone Show metadata Download track Track metadata identifier NGENCDLM3HYMJD data_source ENCODE Download track Download number_of_intervals 63,886 bp_covered 122,202,175 output_type pseudoreplicated peaks genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Male Reproductive encode_experiment_id ENCSR910PDW biological_replicate 2 technical_replicate 2_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,916,562 downloaded_date 06/12/2022 release_date 09/17/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF354ACH.bed.gz processed_file_md5 918341ebafa6336b042147b3046f8002 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF354ACH.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF354ACH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF354ACH/@@download/ENCFF354ACH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF354ACH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3ccfb4d3b2fb186c945217813ce6bc14 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens epithelial cell of prostate male;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ccre_inputv2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSE105828,SCREEN-GRCh38:epithelial_cell_of_prostate_male;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-03-03,2017-01-31;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=epithelial cell of prostate;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=prostate epithelial cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002231;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Unknown track_name ENCODE Epithelial cell (repl. 2) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR910PDW] [Histone ChIP-seq peaks]
H3K27ac • A549 NGENCDN4UCCPHH • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq A549 Histone Show metadata Download track Track metadata identifier NGENCDN4UCCPHH data_source ENCODE Download track Download number_of_intervals 75,070 bp_covered 106,625,261 output_type pseudoreplicated peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR325VCV biological_replicate 3 technical_replicate 3_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 2,164,045 downloaded_date 07/10/2025 release_date 10/02/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF517ZSU.bed.gz processed_file_md5 7c8474a25b605b4ca5c1ea965cd2c21f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF517ZSU.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF517ZSU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF517ZSU/@@download/ENCFF517ZSU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF517ZSU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7217aa1ff11ea036b7798f96283a48b1 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 15 minutes;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE175172;Project=GGR;Award=U01HG007900;Experiment_date_released=2017-10-19;Submitted_track_name=rep3-pr1_vs_rep3-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 3) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR325VCV] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Neural progenitor cell NGENCDO5HNFRNQ • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Neural progenitor cell Histone Show metadata Download track Track metadata identifier NGENCDO5HNFRNQ data_source ENCODE Download track Download number_of_intervals 93,238 bp_covered 26,703,953 output_type pseudoreplicated peaks genome_build hg38 cell_type Neural progenitor cell biosample_type In vitro differentiated cells biosample_term_id CL:0011020 tissue_category Brain encode_experiment_id ENCSR211MKD biological_replicate 3 technical_replicate 3_1, 3_2 antibody H3K27ac assay Mint-ChIP-seq file_format bed narrowPeak file_size 2,287,285 downloaded_date 06/12/2022 release_date 05/11/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF144GKW.bed.gz processed_file_md5 5a88c22485194dccd8acb020054154c2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF144GKW.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF144GKW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF144GKW/@@download/ENCFF144GKW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF144GKW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4a41ae0e9ab5d9f076505006c112713d data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens neural progenitor cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE176661;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-24,2020-07-06;Submitted_track_name=rep3-pr1_vs_rep3-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=neural progenitor cell;ENCODE_cell_slims=progenitor cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0011020;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Embryonic track_name ENCODE Neural progenitor cell (repl. 3) Mint-ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR211MKD] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27ac • Brain NGENCDOIMVLTYG • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Brain Histone Show metadata Download track Track metadata identifier NGENCDOIMVLTYG data_source ENCODE Download track Download number_of_intervals 168,149 bp_covered 108,539,744 output_type replicated peaks genome_build hg38 cell_type Brain biosample_type Organoid biosample_term_id UBERON:0000955 tissue_category Brain encode_experiment_id ENCSR776FPA biological_replicate 2, 3 technical_replicate 2_1, 3_1 antibody H3K27ac assay Mint-ChIP-seq file_format bed narrowPeak file_size 4,701,396 downloaded_date 06/12/2022 release_date 05/11/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF746QYQ.bed.gz processed_file_md5 a57535754588dc1b324d9c8aaa2788f7 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF746QYQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF746QYQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF746QYQ/@@download/ENCFF746QYQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF746QYQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b7bff72b07271bc16c34b1514c3c0186 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27ac replicated peaks track_description version=2024;Biosample_summary=Homo sapiens brain organoid, 180 days post differentiation;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE177700;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-14,2020-07-06;Submitted_track_name=rep2_vs_rep3.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=brain;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;Bio_rep=1, 2, 3;Tech_rep=1_1, 1_2, 2_1, 2_2, 3_1, 3_2;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000955;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Brain (repl. 2, 3) Mint-ChIP-seq H3K27ac-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR776FPA] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Endothelial cell NGENCDOLMR2ST7 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Endothelial cell Histone Show metadata Download track Track metadata identifier NGENCDOLMR2ST7 data_source ENCODE Download track Download number_of_intervals 63,551 bp_covered 62,415,229 output_type pseudoreplicated peaks genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Blood Vessel encode_experiment_id ENCSR111QCU biological_replicate 1 technical_replicate 1_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,797,980 downloaded_date 06/12/2022 release_date 08/25/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF684OIH.bed.gz processed_file_md5 e296d93d45a8dd2d6cfd495a632b0da4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF684OIH.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF684OIH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF684OIH/@@download/ENCFF684OIH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF684OIH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1bfb491dbb1cdedfb6a6bb40b6c904b5 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens brain microvascular endothelial cell;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE167696;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=brain microvascular endothelial cell;ENCODE_cell_slims=endothelial cell,epithelial cell,neural cell;ENCODE_system_slims=central nervous system,circulatory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:2000044;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE Endothelial cell (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR111QCU] [Histone ChIP-seq peaks]