H3K27ac • Brain NGENCEZVFDYDPG • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Brain Histone Show metadata Download track Track metadata identifier NGENCEZVFDYDPG data_source ENCODE Download track Download number_of_intervals 227,604 bp_covered 126,197,434 output_type pseudoreplicated peaks genome_build hg38 cell_type Brain biosample_type Organoid biosample_term_id UBERON:0000955 tissue_category Brain encode_experiment_id ENCSR776FPA biological_replicate 1, 2, 3 technical_replicate 1_1, 1_2, 2_1, 2_2, 3_1, 3_2 antibody H3K27ac assay Mint-ChIP-seq file_format bed narrowPeak file_size 6,200,351 downloaded_date 06/12/2022 release_date 05/11/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF818QNZ.bed.gz processed_file_md5 c4b16090c33fb357ac6ca6014eec5ad1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF818QNZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF818QNZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF818QNZ/@@download/ENCFF818QNZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF818QNZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 417eeddacae589b2274ab8389ff07701 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens brain organoid, 180 days post differentiation;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE177700;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-14,2020-07-06;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=brain;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000955;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Brain (repl. 1, 2, 3) Mint-ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR776FPA] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Lung NGENCF2CQWE4L7 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Lung Histone Show metadata Download track Track metadata identifier NGENCF2CQWE4L7 data_source ENCODE Download track Download number_of_intervals 67,462 bp_covered 100,096,529 output_type pseudoreplicated peaks genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id ENCSR875OQJ biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,826,840 downloaded_date 06/12/2022 release_date 07/23/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF677VJZ.bed.gz processed_file_md5 5dc0a7c8444a241e6a427f8f3aa47d4e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF677VJZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF677VJZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF677VJZ/@@download/ENCFF677VJZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF677VJZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3b99fbeccd9a479473fed62ece9f1141 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens lower lobe of left lung tissue male adult (60 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 60 years;Reference=NR;External_resources=GEO:GSE167742;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-09-10,2020-07-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=lower lobe of left lung;ENCODE_cell_slims=NR;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=left lower lobe,inferior lobe of left lung,lobus inferior pulmonis sinistri,left lung caudal lobe,lobus inferior (pulmo sinister),left lower lobe of lung;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0008953;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE Lung (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR875OQJ] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Uterus NGENCF2ZMIP52F • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Uterus Histone Show metadata Download track Track metadata identifier NGENCF2ZMIP52F data_source ENCODE Download track Download number_of_intervals 70,644 bp_covered 127,868,188 output_type pseudoreplicated peaks genome_build hg38 cell_type Uterus biosample_type Tissue biosample_term_id UBERON:0000995 tissue_category Female Reproductive encode_experiment_id ENCSR189JIH biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,954,825 downloaded_date 06/12/2022 release_date 09/24/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF025GPL.bed.gz processed_file_md5 cc7f68cae848b542bd35f147d40650d8 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF025GPL.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF025GPL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF025GPL/@@download/ENCFF025GPL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF025GPL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b5c1a01731791a5ddfcff3559aab663c data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens uterus tissue female adult (51 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx;Life_stage_age=adult 51 years;Reference=NR;External_resources=GEO:GSE142924;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2018-12-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=uterus;ENCODE_cell_slims=NR;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000995;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Adult track_name ENCODE Uterus (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR189JIH] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Mucosa NGENCF3ESXZNLD • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mucosa Histone Show metadata Download track Track metadata identifier NGENCF3ESXZNLD data_source ENCODE Download track Download number_of_intervals 63,402 bp_covered 54,143,575 output_type pseudoreplicated peaks genome_build hg38 cell_type Mucosa biosample_type Tissue biosample_term_id UBERON:0000344 tissue_category Digestive encode_experiment_id ENCSR175XPY biological_replicate 1 technical_replicate 1_2 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,495,651 downloaded_date 06/12/2022 release_date 01/29/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF896WEY.bed.gz processed_file_md5 eb88667e781883eb76ae0da014f18fb4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF896WEY.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF896WEY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF896WEY/@@download/ENCFF896WEY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF896WEY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ddfc942ba1636b00ba6e500bd9797008 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens colonic mucosa tissue female adult (56 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ccre_inputv2,ENCYCLOPEDIAv2;Life_stage_age=adult 56 years;Reference=PMID:32728046;External_resources=GEO:GSM1112779,SCREEN-GRCh38:colonic_mucosa_female_adult_56_years;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=colonic mucosa;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=colon mucous membrane,colonic mucous membrane,colon mucosa,mucosa of colon,large bowel mucosa,mucosa of large bowel,colonic mucosa;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000317;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE Mucosa (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR175XPY] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Aorta NGENCF3QCQTCPX • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Aorta Histone Show metadata Download track Track metadata identifier NGENCF3QCQTCPX data_source ENCODE Download track Download number_of_intervals 76,790 bp_covered 93,834,643 output_type pseudoreplicated peaks genome_build hg38 cell_type Aorta biosample_type Tissue biosample_term_id UBERON:0000947 tissue_category Blood Vessel encode_experiment_id ENCSR015GFK biological_replicate 1 technical_replicate 1_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 2,004,052 downloaded_date 06/12/2022 release_date 10/10/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF571KHN.bed.gz processed_file_md5 05f0134b3e6cb131d091bff7c9dc4c67 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF571KHN.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF571KHN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF571KHN/@@download/ENCFF571KHN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF571KHN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 efc5e7cadb093264c06551a168fda68e data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens thoracic aorta tissue male adult (37 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ccre_inputv2,ENTEx,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 37 years;Reference=PMID:32728046;External_resources=GEO:GSE95884,SCREEN-GRCh38:thoracic_aorta_male_adult_37_years;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-11-15,2016-08-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=thoracic aorta;ENCODE_cell_slims=NR;ENCODE_system_slims=circulatory system;ENCODE_biosample_term_synonyms=thoracic part of aorta,aorta thoracica;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001515;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Aorta (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR015GFK] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Adrenal gland NGENCF3UZKD22A • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Adrenal gland Histone Show metadata Download track Track metadata identifier NGENCF3UZKD22A data_source ENCODE Download track Download number_of_intervals 96,137 bp_covered 95,924,486 output_type pseudoreplicated peaks genome_build hg38 cell_type Adrenal gland biosample_type Tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id ENCSR847AIA biological_replicate 1 technical_replicate 1_2 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 2,319,588 downloaded_date 06/12/2022 release_date 10/10/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF395ZME.bed.gz processed_file_md5 669c209c2061aaf852b2fe0a59182759 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF395ZME.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF395ZME.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF395ZME/@@download/ENCFF395ZME.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF395ZME.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c56b7577221c7a0a8a6c39180e60a966 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens adrenal gland tissue male embryo (97 days);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=ccre_inputv2,ENCYCLOPEDIAv2,ccre_inputv1,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=embryonic 97 days;Reference=PMID:32728046;External_resources=SCREEN-GRCh38:adrenal_gland_male_embryo_97_days,GEO:GSM1160190;Project=Roadmap;Award=U01ES017156;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=adrenal gland;ENCODE_cell_slims=NR;ENCODE_system_slims=endocrine system;ENCODE_biosample_term_synonyms=glandula suprarenalis,glandula adrenalis;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002369;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Endocrine life_stage Embryonic track_name ENCODE Adrenal gland (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR847AIA] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27ac • HCT116 NGENCF4HRWNN34 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq HCT116 Histone Show metadata Download track Track metadata identifier NGENCF4HRWNN34 data_source ENCODE Download track Download number_of_intervals 43,247 bp_covered 59,495,556 output_type pseudoreplicated peaks genome_build hg38 cell_type HCT116 biosample_type Cell line biosample_term_id EFO:0002824 tissue_category Digestive encode_experiment_id ENCSR661KMA biological_replicate 1, 2 technical_replicate 1_1, 2_2 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,218,601 downloaded_date 06/12/2022 release_date 10/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF582WNF.bed.gz processed_file_md5 52cbca5518f3253ff62a7e0a0235a4ac wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF582WNF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF582WNF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF582WNF/@@download/ENCFF582WNF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF582WNF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 fad3356e6653eb3fbd13221a83741dda data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens HCT116;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ccre_inputv2,ENCYCLOPEDIAv2,ccre_inputv1,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 48 years;Reference=PMID:32728046;External_resources=SCREEN-GRCh38:HCT116,GEO:GSE96299;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-11-18,2015-08-03;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HCT116;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=HCT-116 cell,HCT116 cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002824;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE HCT116 (repl. 1, 2) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR661KMA] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Brain NGENCF54LGUDYB • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Brain Histone Show metadata Download track Track metadata identifier NGENCF54LGUDYB data_source ENCODE Download track Download number_of_intervals 194,835 bp_covered 141,129,489 output_type pseudoreplicated peaks genome_build hg38 cell_type Brain biosample_type Organoid biosample_term_id UBERON:0000955 tissue_category Brain encode_experiment_id ENCSR408CSV biological_replicate 1, 2, 3 technical_replicate 1_1, 1_2, 2_1, 2_2, 3_1, 3_2 antibody H3K27ac assay Mint-ChIP-seq file_format bed narrowPeak file_size 5,640,030 downloaded_date 06/12/2022 release_date 05/11/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF551MLS.bed.gz processed_file_md5 4c2563cb293a55c3e67fbef42208797a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF551MLS.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF551MLS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF551MLS/@@download/ENCFF551MLS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF551MLS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 fb8328beea02688e5bd8a0f8f8c2c989 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens brain organoid, 30 days post differentiation;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE177130;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-14,2020-07-06;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=brain;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000955;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Embryonic track_name ENCODE Brain (repl. 1, 2, 3) Mint-ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR408CSV] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27ac • H9 NGENCF65MDWEGX • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq H9 Histone Show metadata Download track Track metadata identifier NGENCF65MDWEGX data_source ENCODE Download track Download number_of_intervals 148,587 bp_covered 82,824,483 output_type pseudoreplicated peaks genome_build hg38 cell_type H9 biosample_type Stem cell biosample_term_id EFO:0003045 tissue_category Embryo encode_experiment_id ENCSR998ZMN biological_replicate 2 technical_replicate 2_1, 2_2, 2_3, 2_4 antibody H3K27ac assay Mint-ChIP-seq file_format bed narrowPeak file_size 4,057,582 downloaded_date 06/12/2022 release_date 05/06/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF553AXH.bed.gz processed_file_md5 72df25121b63933f47b6d4318b441c8e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF553AXH.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF553AXH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF553AXH/@@download/ENCFF553AXH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF553AXH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 451171834f6ca4004846f3dbe3dd0e3a data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE178065;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-09-06,2020-07-06;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H9;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003045;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H9 (repl. 2) Mint-ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR998ZMN] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27ac • CD4+ alpha-beta memory T cell NGENCF6NPGLI6K • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq CD4+ alpha-beta memory T cell Histone Show metadata Download track Track metadata identifier NGENCF6NPGLI6K data_source ENCODE Download track Download number_of_intervals 29,775 bp_covered 50,827,189 output_type pseudoreplicated peaks genome_build hg38 cell_type CD4+ alpha-beta memory T cell biosample_type Primary cell biosample_term_id CL:0000897 tissue_category Blood encode_experiment_id ENCSR314BEX biological_replicate 1 technical_replicate 1_4 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 851,130 downloaded_date 06/12/2022 release_date 02/10/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF263TBG.bed.gz processed_file_md5 fc2e79503aa4473dd1d725ca9300e03f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF263TBG.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF263TBG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF263TBG/@@download/ENCFF263TBG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF263TBG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 580ed4b69e86716f8383676550da10c7 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens CD4-positive, alpha-beta memory T cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ccre_inputv2,ENCYCLOPEDIAv2,ccre_inputv1,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM772859,SCREEN-GRCh38:T_helper_memory_cells_from_peripheral_blood_1;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=CD4-positive, alpha-beta memory T cell;ENCODE_cell_slims=T cell,leukocyte,CD4+ T cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=CD4-positive, alpha-beta memory T lymphocyte,CD4-positive, alpha-beta memory T-lymphocyte,CD4-positive, alpha-beta memory T-cell;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000897;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE CD4+ alpha-beta memory T cell (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR314BEX] [Histone ChIP-seq peaks]
H3K27ac • Right ventricle NGENCF6ZW7ZPV6 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Right ventricle Histone Show metadata Download track Track metadata identifier NGENCF6ZW7ZPV6 data_source ENCODE Download track Download number_of_intervals 83,121 bp_covered 55,891,313 output_type pseudoreplicated peaks genome_build hg38 cell_type Right ventricle biosample_type Tissue biosample_term_id UBERON:0002080 tissue_category Heart encode_experiment_id ENCSR928HSI biological_replicate 1 technical_replicate 1_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 2,044,631 downloaded_date 06/12/2022 release_date 10/10/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF997SQF.bed.gz processed_file_md5 46bd0269f3e391fd0376ff52f8476336 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF997SQF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF997SQF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF997SQF/@@download/ENCFF997SQF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF997SQF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 31d481e4282f9dbf6fb612088aae5291 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens heart right ventricle tissue male adult (34 years);Lab=Bing Ren, UCSD;ENCODE_internal_tags=RegulomeDB_2_2,ccre_inputv2,ENCYCLOPEDIAv2;Life_stage_age=adult 34 years;Reference=PMID:32728046;External_resources=SCREEN-GRCh38:heart_right_ventricle_male_adult_34_years,GEO:GSM1220280,GEO:GSM1582454;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=heart right ventricle;ENCODE_cell_slims=NR;ENCODE_system_slims=circulatory system;ENCODE_biosample_term_synonyms=right ventricle,cardiac right ventricle,right ventricle of heart;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002080;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Right ventricle (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR928HSI] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Lung NGENCF74Q23ODB • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Lung Histone Show metadata Download track Track metadata identifier NGENCF74Q23ODB data_source ENCODE Download track Download number_of_intervals 71,165 bp_covered 104,554,936 output_type pseudoreplicated peaks genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id ENCSR313CEH biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,766,144 downloaded_date 06/12/2022 release_date 07/23/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF011IHJ.bed.gz processed_file_md5 d19ae08d1c7282c962d935697d1ff2be wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF011IHJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF011IHJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF011IHJ/@@download/ENCFF011IHJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF011IHJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e1f63e4bdcf9d302de1814b5a19c141f data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens lower lobe of left lung tissue female adult (59 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 59 years;Reference=NR;External_resources=GEO:GSE167620;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-09-10,2020-07-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=lower lobe of left lung;ENCODE_cell_slims=NR;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=left lower lobe,inferior lobe of left lung,lobus inferior pulmonis sinistri,left lung caudal lobe,lobus inferior (pulmo sinister),left lower lobe of lung;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0008953;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE Lung (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR313CEH] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Mucosa NGENCFAN3Q2AH4 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mucosa Histone Show metadata Download track Track metadata identifier NGENCFAN3Q2AH4 data_source ENCODE Download track Download number_of_intervals 68,914 bp_covered 54,495,300 output_type pseudoreplicated peaks genome_build hg38 cell_type Mucosa biosample_type Tissue biosample_term_id UBERON:0000344 tissue_category Digestive encode_experiment_id ENCSR327XTS biological_replicate 1 technical_replicate 1_2 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,705,852 downloaded_date 06/12/2022 release_date 01/29/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF575VJE.bed.gz processed_file_md5 85555df38882047e1518c9e8ff29160c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF575VJE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF575VJE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF575VJE/@@download/ENCFF575VJE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF575VJE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ba89db9a69b71a6cf226bb43721ff79d data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens colonic mucosa tissue female adult (73 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ccre_inputv2,ENCYCLOPEDIAv2,ccre_inputv1,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 73 years;Reference=PMID:32728046;External_resources=GEO:GSM1112802,SCREEN-GRCh38:colonic_mucosa_female_adult_73_years;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=colonic mucosa;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=colon mucous membrane,colonic mucous membrane,colon mucosa,mucosa of colon,large bowel mucosa,mucosa of large bowel,colonic mucosa;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000317;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE Mucosa (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR327XTS] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Natural killer cell NGENCFAQPDWDWK • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Natural killer cell Histone Show metadata Download track Track metadata identifier NGENCFAQPDWDWK data_source ENCODE Download track Download number_of_intervals 109,638 bp_covered 164,693,993 output_type pseudoreplicated peaks genome_build hg38 cell_type Natural killer cell biosample_type Primary cell biosample_term_id CL:0000623 tissue_category Blood encode_experiment_id ENCSR067KOO biological_replicate 1 technical_replicate 1_1, 1_2, 1_3, 1_4 antibody H3K27ac assay Mint-ChIP-seq file_format bed narrowPeak file_size 3,086,178 downloaded_date 06/12/2022 release_date 03/30/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF468MEH.bed.gz processed_file_md5 cb6bf5bde8d83cbeb77185de2b050590 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF468MEH.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF468MEH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF468MEH/@@download/ENCFF468MEH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF468MEH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 839a8f74ec61bedc5314856346b90c25 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens natural killer cell male adult (33 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 33 years;Reference=NR;External_resources=GEO:GSE208503;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-04-27,2022-03-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=natural killer cell;ENCODE_cell_slims=NK cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NK cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000623;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Natural killer cell (repl. 1) Mint-ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR067KOO] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • K562 NGENCFBZID47I4 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq K562 Histone Show metadata Download track Track metadata identifier NGENCFBZID47I4 data_source ENCODE Download track Download number_of_intervals 38,075 bp_covered 35,756,284 output_type pseudoreplicated peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000AKP biological_replicate 2 technical_replicate 2_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 982,749 downloaded_date 05/15/2024 release_date 06/16/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF769BEU.bed.gz processed_file_md5 e5e8cb496d3da5c41b7b27a993ef7e54 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF769BEU.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF769BEU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF769BEU/@@download/ENCFF769BEU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF769BEU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 296d206e877353532b3f478bbc9d871c data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ccre_inputv2,ENCYCLOPEDIAv2,ccre_inputv1,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000043,SCREEN-GRCh38:K562,GEO:GSM733656;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AKP] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Small intestine NGENCFDFPVGXZ5 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Small intestine Histone Show metadata Download track Track metadata identifier NGENCFDFPVGXZ5 data_source ENCODE Download track Download number_of_intervals 31,007 bp_covered 35,344,791 output_type pseudoreplicated peaks genome_build hg38 cell_type Small intestine biosample_type Tissue biosample_term_id UBERON:0002108 tissue_category Digestive encode_experiment_id ENCSR543CPW biological_replicate 1 technical_replicate 1_3 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 865,295 downloaded_date 06/12/2022 release_date 10/10/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF923OLB.bed.gz processed_file_md5 4ddcc959290c05a2ff6b6f6168437efc wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF923OLB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF923OLB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF923OLB/@@download/ENCFF923OLB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF923OLB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f62bd8c0905688a01d2130869f8f6bf3 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens small intestine tissue male adult (34 years);Lab=Bing Ren, UCSD;ENCODE_internal_tags=RegulomeDB_2_2,ccre_inputv2,ENCYCLOPEDIAv2;Life_stage_age=adult 34 years;Reference=PMID:32728046;External_resources=GEO:GSM1127172,SCREEN-GRCh38:small_intestine_male_adult_34_years;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=small intestine;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=small intestine,small bowel;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002108;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE Small intestine (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR543CPW] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • BLaER1 NGENCFDIJQCJDA • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENCFDIJQCJDA data_source ENCODE Download track Download number_of_intervals 23,349 bp_covered 22,847,706 output_type pseudoreplicated peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR451WXC biological_replicate 1 technical_replicate 1_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 645,196 downloaded_date 05/15/2024 release_date 02/16/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF118AUL.bed.gz processed_file_md5 dedffcc391786d66fb12af8b2f06be9e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF118AUL.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF118AUL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF118AUL/@@download/ENCFF118AUL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF118AUL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5f78fb0b169defe055dee12033ac7583 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 168 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE258612;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR451WXC] [Histone ChIP-seq peaks]
H3K27ac • Epithelium NGENCFEDGQLFQ5 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Epithelium Histone Show metadata Download track Track metadata identifier NGENCFEDGQLFQ5 data_source ENCODE Download track Download number_of_intervals 56,568 bp_covered 80,894,652 output_type pseudoreplicated peaks genome_build hg38 cell_type Epithelium biosample_type Tissue biosample_term_id NCIT:C12710 tissue_category Digestive encode_experiment_id ENCSR463NAD biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,572,210 downloaded_date 06/12/2022 release_date 09/22/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF675EKQ.bed.gz processed_file_md5 db7be76a8f4475e0e6a6c36cca62604b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF675EKQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF675EKQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF675EKQ/@@download/ENCFF675EKQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF675EKQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 54a92199f1eb03ac889b0e14dd3d7f07 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens esophagus squamous epithelium tissue male adult (54 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx;Life_stage_age=adult 54 years;Reference=NR;External_resources=GEO:GSE139778;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2019-02-12,2019-02-08;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=esophagus squamous epithelium;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0006920;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE Epithelium (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR463NAD] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • HFFc6 NGENCFEIL5N3UP • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq HFFc6 Histone Show metadata Download track Track metadata identifier NGENCFEIL5N3UP data_source ENCODE Download track Download number_of_intervals 145,636 bp_covered 120,185,944 output_type pseudoreplicated peaks genome_build hg38 cell_type HFFc6 biosample_type Cell line biosample_term_id EFO:0009318 tissue_category Male Reproductive encode_experiment_id ENCSR510VXV biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27ac assay Mint-ChIP-seq file_format bed narrowPeak file_size 4,062,249 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF311OTW.bed.gz processed_file_md5 436cfdc9d512c05bce7d3b8e10bb76e3 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF311OTW.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF311OTW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF311OTW/@@download/ENCFF311OTW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF311OTW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 516a2df8a6b39cf5d1bb18c0e42f201f data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens HFFc6;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=newborn 0 years;Reference=NR;External_resources=GEO:GSE177108;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-09-06,2020-07-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HFFc6;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=HFF-hTERT clone 6;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009318;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Newborn track_name ENCODE HFFc6 (repl. 1) Mint-ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR510VXV] [Life stage: Newborn] [Histone ChIP-seq peaks]
H3K27ac • Skin NGENCFGGMQRFW2 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Skin Histone Show metadata Download track Track metadata identifier NGENCFGGMQRFW2 data_source ENCODE Download track Download number_of_intervals 63,319 bp_covered 78,365,590 output_type pseudoreplicated peaks genome_build hg38 cell_type Skin biosample_type Tissue biosample_term_id UBERON:0002097 tissue_category Skin encode_experiment_id ENCSR413QLR biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,642,424 downloaded_date 06/12/2022 release_date 09/23/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF449BZQ.bed.gz processed_file_md5 91335095b709bd2bb7f2e3aa6f20c5c4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF449BZQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF449BZQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF449BZQ/@@download/ENCFF449BZQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF449BZQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3373bc3c0e734efbab05ea8b1ea54fa4 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens suprapubic skin tissue male adult (37 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx;Life_stage_age=adult 37 years;Reference=NR;External_resources=GEO:GSE139767;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2019-09-11,2019-09-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=suprapubic skin;ENCODE_cell_slims=NR;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0036149;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Adult track_name ENCODE Skin (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR413QLR] [Life stage: Adult] [Histone ChIP-seq peaks]