BJ NGADBFHBBS3DN3 • ATACdb v1.03 ATAC-seq BJ Accessible chromatin Show metadata identifier NGADBFHBBS3DN3 data_source ATACdb_v1.03 Download track Download number_of_intervals 76,311 bp_covered 31,704,758 output_type accessible chromatin region genome_build hg38 cell_type BJ biosample_type Cell line biosample_term_id EFO:0002779 tissue_category Connective Tissue encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 2,419,752 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0717_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 998c0795a3227082628e4b5ccf728897 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0717_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0717_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0717.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0717.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 1db9d8adb953d08ebaea6fe418bdef57 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0717;Biosample_Type=Cell Line;Tissue_Type=Skin;Biosample_Name=BJ;Cancer_Type=Other;Region_Number=76394;Length=31754.094 kb;GEO_SRA=GSM2430670;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER system_category Skeletal life_stage Unknown track_name ATACdb_v1.03 BJ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Prefrontal cortex NGADBFHEFGNROB • ATACdb v1.03 ATAC-seq Prefrontal cortex Accessible chromatin Show metadata identifier NGADBFHEFGNROB data_source ATACdb_v1.03 Download track Download number_of_intervals 8,078 bp_covered 3,060,559 output_type accessible chromatin region genome_build hg38 cell_type Prefrontal cortex biosample_type Not applicable biosample_term_id UBERON:0000451 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 256,602 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0527_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 94fa7fe1cbdf2a7c3955cef20f795e87 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0527_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0527_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0527.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0527.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 8206753f71c5cf38a57b34a05d7a5aa0 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0527;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=ventrolateral prefrontal cortex;Cancer_Type=Other;Region_Number=8080;Length=3060.945 kb;GEO_SRA=SRR5367811;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lis system_category Nervous life_stage Unknown track_name ATACdb_v1.03 Prefrontal cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Lymphoblast NGADBFHYAUOI5Z • ATACdb v1.03 ATAC-seq Lymphoblast TFBS Show metadata identifier NGADBFHYAUOI5Z data_source ATACdb_v1.03 Download track Download number_of_intervals 53,391 bp_covered 701,333 output_type transcription factor binding sites genome_build hg38 cell_type Lymphoblast biosample_type Cell line biosample_term_id CL:0017005 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 1,623,613 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0737_hg38_motif_binding_sites.bed.gz processed_file_md5 3c95af61b94b9cb1f24a3badc7aee0e5 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0737_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0737_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0737;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=Lymphoblast;Cancer_Type=Cultured cancer;Region_Number=9934;Length=4238.385 kb;GEO_SRA=SRR6288282;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwang system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Lymphoblast ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Peripheral mononucleated cell NGADBFHZ7GIRU2 • ATACdb v1.03 ATAC-seq Peripheral mononucleated cell Accessible chromatin Show metadata identifier NGADBFHZ7GIRU2 data_source ATACdb_v1.03 Download track Download number_of_intervals 20,237 bp_covered 16,327,591 output_type accessible chromatin region genome_build hg38 cell_type Peripheral mononucleated cell biosample_type Cell line biosample_term_id CL:2000001 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 689,156 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1434_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 80d68c6893cfe35b34f895310ea1f44f wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1434_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1434_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1434.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1434.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 7e0facce49b35a459327a40846d85ab5 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1434;Biosample_Type=Cell Line;Tissue_Type=Peripheral blood;Biosample_Name=JHU-06;Cancer_Type=Leukemia;Region_Number=20280;Length=13912.091 kb;GEO_SRA=SRR5785396;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwan system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Peripheral mononucleated cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Macrophage NGADBFIH7KZMYE • ATACdb v1.03 ATAC-seq Macrophage TFBS Show metadata identifier NGADBFIH7KZMYE data_source ATACdb_v1.03 Download track Download number_of_intervals 77,883 bp_covered 1,053,551 output_type transcription factor binding sites genome_build hg38 cell_type Macrophage biosample_type Not applicable biosample_term_id CL:0000235 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 2,703,938 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1065_hg38_motif_binding_sites.bed.gz processed_file_md5 979fbacef77e377d957089fe7ccad62c wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1065_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1065_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1065;Biosample_Type=Other;Tissue_Type=Myeloid;Biosample_Name=Macrophage;Cancer_Type=Other;Region_Number=23019;Length=10579.223 kb;GEO_SRA=SRR3213972;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Macrophage ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Neuron NGADBFII5ONHQN • ATACdb v1.03 ATAC-seq Neuron Accessible chromatin Show metadata identifier NGADBFII5ONHQN data_source ATACdb_v1.03 Download track Download number_of_intervals 22,586 bp_covered 12,374,086 output_type accessible chromatin region genome_build hg38 cell_type Neuron biosample_type Induced pluripotent stem cell line biosample_term_id CL:0000540 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 737,702 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0067_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 6cc777013fab51e6e6c4cb4bab00f735 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0067_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0067_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0067.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0067.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 b0f669ebab6505cf9d726570228234c1 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0067;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Forebrain;Biosample_Name=Forebrain neurons;Cancer_Type=Normal;Region_Number=22653;Length=12406.348 kb;GEO_SRA=SRR5417031;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowled system_category Nervous life_stage Unknown track_name ATACdb_v1.03 Neuron ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Nucleus accumbens NGADBFIVHMGZEO • ATACdb v1.03 ATAC-seq Nucleus accumbens TFBS Show metadata identifier NGADBFIVHMGZEO data_source ATACdb_v1.03 Download track Download number_of_intervals 140,794 bp_covered 1,935,948 output_type transcription factor binding sites genome_build hg38 cell_type Nucleus accumbens biosample_type Tissue biosample_term_id UBERON:0001882 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 4,660,948 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0052_hg38_motif_binding_sites.bed.gz processed_file_md5 a24b4bebed231ef01c67b339aa36a5db wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0052_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0052_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0052;Biosample_Type=Tissue;Tissue_Type=Brain;Biosample_Name=nucleus accumbens;Cancer_Type=Normal;Region_Number=44883;Length=18699.048 kb;GEO_SRA=SRR5343872;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab. system_category Nervous life_stage Unknown track_name ATACdb_v1.03 Nucleus accumbens ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Plasmablast NGADBFIWFM6DWC • ATACdb v1.03 ATAC-seq Plasmablast Accessible chromatin Show metadata identifier NGADBFIWFM6DWC data_source ATACdb_v1.03 Download track Download number_of_intervals 43,886 bp_covered 29,518,370 output_type accessible chromatin region genome_build hg38 cell_type Plasmablast biosample_type Not applicable biosample_term_id CL:0000980 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,480,833 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0205_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 7d896efd5158dcbb608b327ea6964455 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0205_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0205_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0205.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0205.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 48915bf118e2007cc0e16977d0fae3a5 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0205;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Plasmablast;Cancer_Type=Normal;Region_Number=44012;Length=29619.439 kb;GEO_SRA=SRR7650735;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Plasmablast ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
T98G NGADBFIXILKV6P • ATACdb v1.03 ATAC-seq T98G Accessible chromatin Show metadata identifier NGADBFIXILKV6P data_source ATACdb_v1.03 Download track Download number_of_intervals 14,173 bp_covered 10,280,817 output_type accessible chromatin region genome_build hg38 cell_type T98G biosample_type Cell line biosample_term_id EFO:0002085 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 476,817 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0368_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 6ef49cb824ab381a7b806dce37f0a0ed wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0368_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0368_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0368.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0368.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 49630620f702068033e2cc462825cb14 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0368;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=T98G;Cancer_Type=Glioblastoma;Region_Number=14229;Length=10319.24 kb;GEO_SRA=SRR6251845;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/G system_category Nervous life_stage Unknown track_name ATACdb_v1.03 T98G ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
K562 NGADBFJ2BW5LFQ • ATACdb v1.03 ATAC-seq K562 Accessible chromatin Show metadata identifier NGADBFJ2BW5LFQ data_source ATACdb_v1.03 Download track Download number_of_intervals 28,758 bp_covered 9,591,885 output_type accessible chromatin region genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 905,473 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0929_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 c2c5d4688e33502979db392a8e44ab50 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0929_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0929_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0929.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0929.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 bb610b0352b63e34d083b600adf82527 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0929;Biosample_Type=Cell Line;Tissue_Type=Bone marrow;Biosample_Name=K562;Cancer_Type=Leukemia;Region_Number=28796;Length=9604.945 kb;GEO_SRA=SRR5809236;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 K562 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
hESC NGADBFJ32H3RCB • ATACdb v1.03 ATAC-seq hESC Accessible chromatin Show metadata identifier NGADBFJ32H3RCB data_source ATACdb_v1.03 Download track Download number_of_intervals 81,857 bp_covered 37,028,874 output_type accessible chromatin region genome_build hg38 cell_type hESC biosample_type Cell line biosample_term_id CL:0002322 tissue_category Stem Cell encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 2,591,032 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0740_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 fd2cc842b17f161b3acb51c835e87143 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0740_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0740_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0740.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0740.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 8257eaa5085e0e2e462559b3250637b3 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0740;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=RUES2;Cancer_Type=Normal;Region_Number=81983;Length=37068.384 kb;GEO_SRA=SRR6269274;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system_category Stem Cell life_stage Unknown track_name ATACdb_v1.03 hESC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
K562 NGADBFJGPN4MJ4 • ATACdb v1.03 ATAC-seq K562 Accessible chromatin Show metadata identifier NGADBFJGPN4MJ4 data_source ATACdb_v1.03 Download track Download number_of_intervals 4,025 bp_covered 1,545,758 output_type accessible chromatin region genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 123,106 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0733_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 7b71db5f655a5f830e91bfd05416774a wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0733_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0733_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0733.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0733.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 c649e03e747f3d7a960256617a7ad0c8 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0733;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=K562;Cancer_Type=Cultured cancer;Region_Number=4028;Length=1548.865 kb;GEO_SRA=SRR6288278;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 K562 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
CD34+ HSPC NGADBFJULZBDWC • ATACdb v1.03 ATAC-seq CD34+ HSPC Accessible chromatin Show metadata identifier NGADBFJULZBDWC data_source ATACdb_v1.03 Download track Download number_of_intervals 23,808 bp_covered 12,377,279 output_type accessible chromatin region genome_build hg38 cell_type CD34+ HSPC biosample_type Primary cell biosample_term_id CL:0000037 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 811,576 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1233_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 c26f6583cd581641624f55bdee8325bb wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1233_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1233_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1233.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1233.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 12d8b21639fe3b1a369e6812627b1476 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1233;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD34+ HSPC;Cancer_Type=Normal;Region_Number=23876;Length=12394.074 kb;GEO_SRA=SRR2453157;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.o system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 CD34+ HSPC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
BJ NGADBFK6BCTVMZ • ATACdb v1.03 ATAC-seq BJ TFBS Show metadata identifier NGADBFK6BCTVMZ data_source ATACdb_v1.03 Download track Download number_of_intervals 191,776 bp_covered 2,601,665 output_type transcription factor binding sites genome_build hg38 cell_type BJ biosample_type Cell line biosample_term_id EFO:0002779 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 6,754,425 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0722_hg38_motif_binding_sites.bed.gz processed_file_md5 c1b7cc53037bfe8c9a9fc61c7fe78b66 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0722_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0722_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0722;Biosample_Type=Cell Line;Tissue_Type=Foreskin;Biosample_Name=BJ-5ta;Cancer_Type=Normal;Region_Number=56679;Length=31579.475 kb;GEO_SRA=SRR6667569;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/G system_category Integumentary life_stage Unknown track_name ATACdb_v1.03 BJ ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
U2OS NGADBFKCESWUEJ • ATACdb v1.03 ATAC-seq U2OS TFBS Show metadata identifier NGADBFKCESWUEJ data_source ATACdb_v1.03 Download track Download number_of_intervals 196,646 bp_covered 2,655,693 output_type transcription factor binding sites genome_build hg38 cell_type U2OS biosample_type Cell line biosample_term_id EFO:0002869 tissue_category Bone encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 6,687,702 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0597_hg38_motif_binding_sites.bed.gz processed_file_md5 57a75f821d194c9e33a276539436491a wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0597_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0597_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0597;Biosample_Type=Cell Line;Tissue_Type=Bone;Biosample_Name=U2OS;Cancer_Type=Osteosarcoma;Region_Number=57115;Length=25461.453 kb;GEO_SRA=GSM2946877;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/G system_category Skeletal life_stage Unknown track_name ATACdb_v1.03 U2OS ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
CD45RA+ CCR7+ CD8 T cell NGADBFKFSYCW2Y • ATACdb v1.03 ATAC-seq CD45RA+ CCR7+ CD8 T cell Accessible chromatin Show metadata identifier NGADBFKFSYCW2Y data_source ATACdb_v1.03 Download track Download number_of_intervals 9,370 bp_covered 3,685,134 output_type accessible chromatin region genome_build hg38 cell_type CD45RA+ CCR7+ CD8 T cell biosample_type Primary cell biosample_term_id CL:0000900 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 301,675 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0837_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 d8facf99ecbf6cab2901e02f6122c82a wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0837_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0837_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0837.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0837.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 9e12158f2d521fef80185222baa2f055 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0837;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=YF;Cancer_Type=The Yellow fever;Region_Number=9390;Length=3696.475 kb;GEO_SRA=SRR5839489;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.o system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 CD45RA+ CCR7+ CD8 T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
HAEC NGADBFKPGXEGD4 • ATACdb v1.03 ATAC-seq HAEC Accessible chromatin Show metadata identifier NGADBFKPGXEGD4 data_source ATACdb_v1.03 Download track Download number_of_intervals 39,714 bp_covered 16,634,038 output_type accessible chromatin region genome_build hg38 cell_type HAEC biosample_type Not applicable biosample_term_id EFO:0022506 tissue_category Blood Vessel encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,290,303 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0104_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 5cfd53d7eea84b379ad4991b9779e3a1 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0104_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0104_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0104.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0104.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 d251a5602c8ed14b69e7c35c4c743b02 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0104;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=HAEC;Cancer_Type=Coronary artery disease;Region_Number=39789;Length=16651.508 kb;GEO_SRA=SRR6898225;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwangl system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 HAEC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Induced pluripotent stem cell NGADBFKROREGIX • ATACdb v1.03 ATAC-seq Induced pluripotent stem cell TFBS Show metadata identifier NGADBFKROREGIX data_source ATACdb_v1.03 Download track Download number_of_intervals 20,723 bp_covered 276,116 output_type transcription factor binding sites genome_build hg38 cell_type Induced pluripotent stem cell biosample_type Stem cell biosample_term_id EFO:0004905 tissue_category iPSC encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 691,288 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0778_hg38_motif_binding_sites.bed.gz processed_file_md5 ad296f382a465f43d65c57b3d4e30445 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0778_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0778_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0778;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA19257;Cancer_Type=Other;Region_Number=5997;Length=2401.329 kb;GEO_SRA=SRR6412411;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GA system_category Stem Cell life_stage Unknown track_name ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
CD45RA+ CCR7+ CD8 T cell NGADBFKVJANEVX • ATACdb v1.03 ATAC-seq CD45RA+ CCR7+ CD8 T cell TFBS Show metadata identifier NGADBFKVJANEVX data_source ATACdb_v1.03 Download track Download number_of_intervals 22,444 bp_covered 292,537 output_type transcription factor binding sites genome_build hg38 cell_type CD45RA+ CCR7+ CD8 T cell biosample_type Primary cell biosample_term_id CL:0000900 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 669,472 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0830_hg38_motif_binding_sites.bed.gz processed_file_md5 cc1adee7fef12414376954f53ccabbc6 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0830_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0830_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0830;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=YF;Cancer_Type=The Yellow fever;Region_Number=4428;Length=1334.01 kb;GEO_SRA=SRR5839482;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.or system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 CD45RA+ CCR7+ CD8 T cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
MRC-5 NGADBFKWSGPHF4 • ATACdb v1.03 ATAC-seq MRC-5 Accessible chromatin Show metadata identifier NGADBFKWSGPHF4 data_source ATACdb_v1.03 Download track Download number_of_intervals 56,138 bp_covered 19,303,279 output_type accessible chromatin region genome_build hg38 cell_type MRC-5 biosample_type Cell line biosample_term_id EFO:0002835 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,746,091 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1106_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 f301e74e3e9c7698d38b09db7849bc4b wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1106_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1106_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1106.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1106.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 d39d7707c0834554eef7997de42f8a9b data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1106;Biosample_Type=Cell Line;Tissue_Type=Lung;Biosample_Name=MRC-5;Cancer_Type=Normal;Region_Number=56188;Length=19322.855 kb;GEO_SRA=SRR3438293;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/F system_category Respiratory life_stage Unknown track_name ATACdb_v1.03 MRC-5 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]