B cell NGABCXDY5GK2RZ • Nasser 2021 ABC enhancer gene ABC B cell Chromatin interactions Show metadata identifier NGABCXDY5GK2RZ data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 66,626 bp_covered 36,829,465 output_type enhancer-gene interactions genome_build hg38 cell_type B cell biosample_type Primary cell biosample_term_id CL:0000236 tissue_category Immune encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,463,323 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_B_cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 05f69ae89ce3e2e3593393630f21432f wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_B_cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_int tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_B_cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19 link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/B_cell-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/B_cell-ENCODE_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 1b24e86bebfac397e05c90c5851c3db0 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=B_cell-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11 system_category Lymphatic life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene B cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Pancreas NGABCXH374X43F • Nasser 2021 ABC enhancer gene ABC Pancreas Chromatin interactions Show metadata identifier NGABCXH374X43F data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 65,414 bp_covered 32,920,756 output_type enhancer-gene interactions genome_build hg38 cell_type Pancreas biosample_type Primary tissue biosample_term_id UBERON:0001264 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,387,886 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_pancreas-Roadmap_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 79e7bacf848b57f030338e2e859ac685 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_pancreas-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_pancreas-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plu link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/pancreas-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/pancreas-Roadmap_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 67a468f880e7c6cc055ef99c9ff263be data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=pancreas-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/10.1038/natu system_category Digestive life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Pancreas ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
HT-29 NGABCXUDPJANS5 • Nasser 2021 ABC enhancer gene ABC HT-29 Chromatin interactions Show metadata identifier NGABCXUDPJANS5 data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 61,834 bp_covered 35,202,818 output_type enhancer-gene interactions genome_build hg38 cell_type HT-29 biosample_type Cell line biosample_term_id EFO:0001193 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,072,301 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_HT29_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 7089328fcdeab58ae1a35f6274116c38 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_HT29_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg3 tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_HT29_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/HT29_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/HT29_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 64cd2174c743d835e66a2a39759a06e7 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=HT29;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=HT29;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11247;abc_cel system_category Digestive life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene HT-29 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
HAP-1 NGABCYIXCDBGKK • Nasser 2021 ABC enhancer gene ABC HAP-1 Chromatin interactions Show metadata identifier NGABCYIXCDBGKK data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 57,860 bp_covered 32,230,495 output_type enhancer-gene interactions genome_build hg38 cell_type HAP-1 biosample_type Cell line biosample_term_id EFO:0007598 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 3,764,421 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_HAP1_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 54329f0c6df24d4723d3e2514ca3d6b0 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_HAP1_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg3 tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_HAP1_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/HAP1_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/HAP1_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 b9b4e0c3c3177c747d5c8cd7e4dd15b3 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=HAP1;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=HAP1;biosample_type_note=done;source_pubmed=30153076;source_doi=10.1080/15548627.2018.1509608;abc_celltype_ system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene HAP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Fibroblast NGABCYSRQF7QYY • Nasser 2021 ABC enhancer gene ABC Fibroblast Chromatin interactions Show metadata identifier NGABCYSRQF7QYY data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 60,694 bp_covered 38,541,975 output_type enhancer-gene interactions genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,096,307 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_fibroblast_of_arm-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 6f56f1061e0922a6f3e998cdc286762f wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_fibroblast_of_arm-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_fibroblast_of_arm-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/fibroblast_of_arm-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/fibroblast_of_arm-ENCODE_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 5e040c954cb191c90402f9d81aaac2ed data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=fibroblast_of_arm-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.10 system_category Integumentary life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Fibroblast ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Transverse colon NGABCZ2EGLRUBC • Nasser 2021 ABC enhancer gene ABC Transverse colon Chromatin interactions Show metadata identifier NGABCZ2EGLRUBC data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 64,608 bp_covered 22,511,704 output_type enhancer-gene interactions genome_build hg38 cell_type Transverse colon biosample_type Tissue biosample_term_id UBERON:0001157 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,353,532 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_transverse_colon-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 79e3073cdd233e06a0e45ad217b7a1d5 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_transverse_colon-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4 tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_transverse_colon-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/ link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/transverse_colon-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/transverse_colon-ENCODE_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 5bc109b9c531b95104e97264c748f4e6 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=transverse_colon-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.103 system_category Digestive life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Transverse colon ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
BJAB NGABCZ3J5N4F45 • Nasser 2021 ABC enhancer gene ABC BJAB Chromatin interactions Show metadata identifier NGABCZ3J5N4F45 data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 52,824 bp_covered 15,608,487 output_type enhancer-gene interactions genome_build hg38 cell_type BJAB biosample_type Cell line biosample_term_id EFO:0002815 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 3,494,792 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_BJAB-Engreitz_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 d7219d774b0d2928b90887d9445349ba wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_BJAB-Engreitz_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_int tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_BJAB-Engreitz_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19 link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/BJAB-Engreitz_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/BJAB-Engreitz_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 30910f4dd63025e6788cf39af27b6635 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=BJAB-Engreitz;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Engreitz;biosample_type_note=done;source_pubmed=33828297;source_doi=https://doi.org/10.1038/s41586 system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene BJAB ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
CD14+ monocyte NGABCZB5SENA7O • Nasser 2021 ABC enhancer gene ABC CD14+ monocyte Chromatin interactions Show metadata identifier NGABCZB5SENA7O data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 64,898 bp_covered 21,166,014 output_type enhancer-gene interactions genome_build hg38 cell_type CD14+ monocyte biosample_type Primary cell biosample_term_id CL:0001054 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,394,499 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 8bea5a3eed818e9a8ef9e0e345e57929 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Conta tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-C link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD14-positive_monocyte-Novakovic2016_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD14-positive_monocyte-Novakovic2016_EnhancerPredictio raw_file_md5 bc941e551f7cc2cbc4eb11445871eb02 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=CD14-positive_monocyte-Novakovic2016;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Novakovic 2016;biosample_type_note=needs revising;source_pubmed=27863248;so system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene CD14+ monocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Mobilized CD34+ NGABCZBXBS4F6D • Nasser 2021 ABC enhancer gene ABC Mobilized CD34+ Chromatin interactions Show metadata identifier NGABCZBXBS4F6D data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 64,592 bp_covered 31,820,372 output_type enhancer-gene interactions genome_build hg38 cell_type Mobilized CD34+ biosample_type Primary cell biosample_term_id CL:0000037 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,359,728 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD34-positive_mobilized-Roadmap_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 ee8760183785c1748b162f1897635ddf wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD34-positive_mobilized-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_mo tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD34-positive_mobilized-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contac link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD34-positive_mobilized-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD34-positive_mobilized-Roadmap_EnhancerPredictionsFull.txt raw_file_md5 a9bdf4e054f67efba642381f12b20d03 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=CD34-positive_mobilized-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.o system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Mobilized CD34+ ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
HepG2 NGABCZCVR5UGM7 • Nasser 2021 ABC enhancer gene ABC HepG2 Chromatin interactions Show metadata identifier NGABCZCVR5UGM7 data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 64,298 bp_covered 31,429,138 output_type enhancer-gene interactions genome_build hg38 cell_type HepG2 biosample_type Primary cell biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,225,131 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_HepG2-Roadmap_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 60aa682450f794e6c04700309c0542e1 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_HepG2-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_int tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_HepG2-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19 link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/HepG2-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/HepG2-Roadmap_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 5e500b96847dfda6f237203c6cea0cf3 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=HepG2-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/10.1038/nature1 system_category Digestive life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene HepG2 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Stomach NGABCZOZH45RQW • Nasser 2021 ABC enhancer gene ABC Stomach Chromatin interactions Show metadata identifier NGABCZOZH45RQW data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 63,202 bp_covered 43,055,675 output_type enhancer-gene interactions genome_build hg38 cell_type Stomach biosample_type Primary tissue biosample_term_id UBERON:0000945 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,279,903 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_stomach_fetal-Roadmap_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 ca5f3335059b5dc0bddbd94e7383a681 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_stomach_fetal-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4pl tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_stomach_fetal-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/be link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/stomach_fetal-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/stomach_fetal-Roadmap_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 ee411c64b1f6f8898e3a97fc32b62886 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=stomach_fetal-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/10.1038 system_category Digestive life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Stomach ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
WT-hiPSC 1 NGADB222ATNT7H • ATACdb v1.03 ATAC-seq WT-hiPSC 1 Accessible chromatin Show metadata identifier NGADB222ATNT7H data_source ATACdb_v1.03 Download track Download number_of_intervals 26,679 bp_covered 9,269,951 output_type accessible chromatin region genome_build hg38 cell_type WT-hiPSC 1 biosample_type Induced pluripotent stem cell line biosample_term_id CL:0002248 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 828,363 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0135_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 32da70be6fa252a2a94c485caf92c5df wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0135_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0135_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0135.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0135.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 180c2b46a8b0009b5da510fcfaa9c30d data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0135;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Neuron;Biosample_Name=WT hiPSC#1;Cancer_Type=Branchio-Oculo-Facial Syndrome (BOFS);Region_Number=26714;Length=9272.209 kb;GEO_SRA=SRR6418910;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes; system_category Nervous life_stage Unknown track_name ATACdb_v1.03 WT-hiPSC 1 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
hESC NGADB22KCTLP4B • ATACdb v1.03 ATAC-seq hESC TFBS Show metadata identifier NGADB22KCTLP4B data_source ATACdb_v1.03 Download track Download number_of_intervals 222,374 bp_covered 3,067,329 output_type transcription factor binding sites genome_build hg38 cell_type hESC biosample_type Stem cell biosample_term_id CL:0002322 tissue_category Stem Cell encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 7,063,959 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0603_hg38_motif_binding_sites.bed.gz processed_file_md5 c74f11479affa68de6a9453ea1da3427 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0603_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0603_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0603;Biosample_Type=Stem Cell;Tissue_Type=Embryo;Biosample_Name=Embryo;Cancer_Type=Normal;Region_Number=43277;Length=26758.396 kb;GEO_SRA=GSM2706227;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system_category Stem Cell life_stage Embryonic track_name ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic] [TFBS]
hESC NGADB22VKNLQLP • ATACdb v1.03 ATAC-seq hESC Accessible chromatin Show metadata identifier NGADB22VKNLQLP data_source ATACdb_v1.03 Download track Download number_of_intervals 19,856 bp_covered 5,725,463 output_type accessible chromatin region genome_build hg38 cell_type hESC biosample_type Cell line biosample_term_id CL:0002322 tissue_category Stem Cell encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 631,689 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0656_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 3575064288e384514c3fabfa5660b1ae wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0656_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0656_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0656.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0656.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 16214906f39140f7babc4093825379e1 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0656;Biosample_Type=Cell Line;Tissue_Type=Embryo;Biosample_Name=HESC;Cancer_Type=Normal;Region_Number=19894;Length=5741.08 kb;GEO_SRA=SRR5459171;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FI system_category Stem Cell life_stage Embryonic track_name ATACdb_v1.03 hESC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic] [Accessible chromatin]
Peripheral mononucleated cell NGADB22WL2CAWH • ATACdb v1.03 ATAC-seq Peripheral mononucleated cell Accessible chromatin Show metadata identifier NGADB22WL2CAWH data_source ATACdb_v1.03 Download track Download number_of_intervals 24,455 bp_covered 18,115,422 output_type accessible chromatin region genome_build hg38 cell_type Peripheral mononucleated cell biosample_type Cell line biosample_term_id CL:2000001 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 842,566 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1437_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 c864ae1f35cb3682c441f139d9c16f11 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1437_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1437_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1437.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1437.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 587f59d9e6b6ebc046b340b68fd7e933 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1437;Biosample_Type=Cell Line;Tissue_Type=Peripheral blood;Biosample_Name=JHU-06;Cancer_Type=Leukemia;Region_Number=24502;Length=18139.485 kb;GEO_SRA=SRR5785404;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwan system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Peripheral mononucleated cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
hESC NGADB23364DAST • ATACdb v1.03 ATAC-seq hESC TFBS Show metadata identifier NGADB23364DAST data_source ATACdb_v1.03 Download track Download number_of_intervals 124,375 bp_covered 1,661,514 output_type transcription factor binding sites genome_build hg38 cell_type hESC biosample_type Cell line biosample_term_id CL:0002322 tissue_category Stem Cell encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 4,149,946 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0655_hg38_motif_binding_sites.bed.gz processed_file_md5 59a9dddaf6337b269d602e88d0bc763d wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0655_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0655_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0655;Biosample_Type=Cell Line;Tissue_Type=Embryo;Biosample_Name=HESC;Cancer_Type=Normal;Region_Number=36226;Length=12689.173 kb;GEO_SRA=SRR5459170;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system_category Stem Cell life_stage Embryonic track_name ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic] [TFBS]
K562 NGADB233LQ6XZJ • ATACdb v1.03 ATAC-seq K562 TFBS Show metadata identifier NGADB233LQ6XZJ data_source ATACdb_v1.03 Download track Download number_of_intervals 61,554 bp_covered 800,781 output_type transcription factor binding sites genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 1,757,686 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1029_hg38_motif_binding_sites.bed.gz processed_file_md5 e92391370f2fb998dd2df0a3d3c514fd wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1029_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1029_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1029;Biosample_Type=Cell Line;Tissue_Type=Bone marrow;Biosample_Name=K-562;Cancer_Type=Erythroleukemic;Region_Number=9019;Length=3710.573 kb;GEO_SRA=SRR5128066;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwang system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 K562 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Induced pluripotent stem cell NGADB236EPBKFD • ATACdb v1.03 ATAC-seq Induced pluripotent stem cell TFBS Show metadata identifier NGADB236EPBKFD data_source ATACdb_v1.03 Download track Download number_of_intervals 212,246 bp_covered 2,869,946 output_type transcription factor binding sites genome_build hg38 cell_type Induced pluripotent stem cell biosample_type Stem cell biosample_term_id EFO:0004905 tissue_category iPSC encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 7,058,086 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0787_hg38_motif_binding_sites.bed.gz processed_file_md5 a64c813cae08155e08110811cd51ed79 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0787_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0787_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0787;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA19160;Cancer_Type=Other;Region_Number=52136;Length=31626.445 kb;GEO_SRA=SRR6412421;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/ system_category Stem Cell life_stage Unknown track_name ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Induced pluripotent stem cell NGADB23KDTPD4M • ATACdb v1.03 ATAC-seq Induced pluripotent stem cell TFBS Show metadata identifier NGADB23KDTPD4M data_source ATACdb_v1.03 Download track Download number_of_intervals 332,984 bp_covered 4,587,018 output_type transcription factor binding sites genome_build hg38 cell_type Induced pluripotent stem cell biosample_type Stem cell biosample_term_id EFO:0004905 tissue_category iPSC encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 12,794,731 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0773_hg38_motif_binding_sites.bed.gz processed_file_md5 4bcfecb08e57a863022751372220cf3f wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0773_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0773_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0773;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA19108;Cancer_Type=Other;Region_Number=138149;Length=88629.544 kb;GEO_SRA=SRR6412491;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org system_category Stem Cell life_stage Unknown track_name ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
K562 NGADB23V3DGCBI • ATACdb v1.03 ATAC-seq K562 TFBS Show metadata identifier NGADB23V3DGCBI data_source ATACdb_v1.03 Download track Download number_of_intervals 42,390 bp_covered 551,802 output_type transcription factor binding sites genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 1,207,140 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1033_hg38_motif_binding_sites.bed.gz processed_file_md5 0c06e343a35686480c634ae569c8d698 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1033_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1033_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1033;Biosample_Type=Cell Line;Tissue_Type=Bone marrow;Biosample_Name=K-562;Cancer_Type=Erythroleukemic;Region_Number=6686;Length=2614.247 kb;GEO_SRA=SRR5128070;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwang system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 K562 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]