H3K27ac • A549 NGENCYMJ5K6J53 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq A549 Histone Show metadata Download track Track metadata identifier NGENCYMJ5K6J53 data_source ENCODE Download track Download number_of_intervals 62,130 bp_covered 110,036,841 output_type replicated peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR569IBY biological_replicate 1, 3 technical_replicate 1_1, 3_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,809,835 downloaded_date 07/10/2025 release_date 10/01/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF517YKC.bed.gz processed_file_md5 d63d7e37d9b68966560320b6b2ac20b0 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF517YKC.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF517YKC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF517YKC/@@download/ENCFF517YKC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF517YKC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f84252b7181a6d3878f00aa5b09bc076 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac replicated peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 7 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91292;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=rep1_vs_rep3.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;Bio_rep=1, 2, 3;Tech_rep=1_1, 2_1, 3_1;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1, 3) Histone ChIP-seq H3K27ac replicated peaks (narrowPeak) [Experiment: ENCSR569IBY] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Endodermal cell NGENCYMVSRQ6Q4 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Endodermal cell Histone Show metadata Download track Track metadata identifier NGENCYMVSRQ6Q4 data_source ENCODE Download track Download number_of_intervals 39,284 bp_covered 24,689,383 output_type pseudoreplicated peaks genome_build hg38 cell_type Endodermal cell biosample_type In vitro differentiated cells biosample_term_id CL:0000223 tissue_category Embryo encode_experiment_id ENCSR200ETW biological_replicate 2 technical_replicate 2_2 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 928,736 downloaded_date 06/12/2022 release_date 10/10/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF789KBZ.bed.gz processed_file_md5 7db6551f69a672e35b5c64297c890c37 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF789KBZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF789KBZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF789KBZ/@@download/ENCFF789KBZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF789KBZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ff9f4bdcb338d1c91c57ba0c6eef7c65 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens endodermal cell originated from HUES64;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ccre_inputv2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM1112830,SCREEN-GRCh38:endodermal_cell_originated_from_HUES64,GEO:GSM1112831;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=endodermal cell;ENCODE_cell_slims=embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=endoderm cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000223;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Endodermal cell (repl. 2) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR200ETW] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27ac • Endothelial cell NGENCYNCKVUK33 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Endothelial cell Histone Show metadata Download track Track metadata identifier NGENCYNCKVUK33 data_source ENCODE Download track Download number_of_intervals 59,971 bp_covered 66,880,059 output_type pseudoreplicated peaks genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Blood Vessel encode_experiment_id ENCSR111QCU biological_replicate 2 technical_replicate 2_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,743,592 downloaded_date 06/12/2022 release_date 08/25/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF783KEN.bed.gz processed_file_md5 388c03d61704952d3c153029bf871659 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF783KEN.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF783KEN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF783KEN/@@download/ENCFF783KEN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF783KEN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5fa462825e7c0a087fa8403771978ff2 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens brain microvascular endothelial cell;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE167696;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-28;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=brain microvascular endothelial cell;ENCODE_cell_slims=endothelial cell,epithelial cell,neural cell;ENCODE_system_slims=central nervous system,circulatory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:2000044;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE Endothelial cell (repl. 2) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR111QCU] [Histone ChIP-seq peaks]
H3K27ac • A549 NGENCYPAAX55EN • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq A549 Histone Show metadata Download track Track metadata identifier NGENCYPAAX55EN data_source ENCODE Download track Download number_of_intervals 63,111 bp_covered 105,181,588 output_type replicated peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR102XUM biological_replicate 2, 3 technical_replicate 2_1, 3_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,835,163 downloaded_date 07/10/2025 release_date 10/02/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF371CYR.bed.gz processed_file_md5 e0f648e53a6d151024fe2792c4cd659e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF371CYR.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF371CYR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF371CYR/@@download/ENCFF371CYR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF371CYR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d9964f9f66093062aef0d8c920808a6a data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac replicated peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 0.5 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91201;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=rep2_vs_rep3.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;Bio_rep=1, 2, 3;Tech_rep=1_1, 2_1, 3_1;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 2, 3) Histone ChIP-seq H3K27ac replicated peaks (narrowPeak) [Experiment: ENCSR102XUM] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Keratinocyte NGENCYPCYDR7ZB • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Keratinocyte Histone Show metadata Download track Track metadata identifier NGENCYPCYDR7ZB data_source ENCODE Download track Download number_of_intervals 61,141 bp_covered 56,450,519 output_type pseudoreplicated peaks genome_build hg38 cell_type Keratinocyte biosample_type Primary cell biosample_term_id CL:0000312 tissue_category Skin encode_experiment_id ENCSR000ALK biological_replicate 1 technical_replicate 1_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,557,398 downloaded_date 06/12/2022 release_date 09/30/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF517EHK.bed.gz processed_file_md5 fca0369ea58d86eca99bd591a05432cc wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF517EHK.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF517EHK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF517EHK/@@download/ENCFF517EHK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF517EHK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 526bb9cb00c41367b7313be640a9fb2b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens keratinocyte female;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ccre_inputv2,ENCYCLOPEDIAv2,ccre_inputv1,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=SCREEN-GRCh38:keratinocyte_female_donor_ENCDO268AAA,UCSC-ENCODE-hg19:wgEncodeEH000064,GEO:GSM733674;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=keratinocyte;ENCODE_cell_slims=keratinocyte,epithelial cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=keratinized cell of epidermis,malpighian cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000312;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Unknown track_name ENCODE Keratinocyte (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ALK] [Histone ChIP-seq peaks]
H3K27ac • CD8+ alpha-beta T cell NGENCYPQUVPSIM • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq CD8+ alpha-beta T cell Histone Show metadata Download track Track metadata identifier NGENCYPQUVPSIM data_source ENCODE Download track Download number_of_intervals 120,528 bp_covered 81,161,127 output_type pseudoreplicated peaks genome_build hg38 cell_type CD8+ alpha-beta T cell biosample_type Primary cell biosample_term_id CL:0000625 tissue_category Blood encode_experiment_id ENCSR728KQL biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27ac assay Mint-ChIP-seq file_format bed narrowPeak file_size 3,247,250 downloaded_date 06/12/2022 release_date 05/06/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF948ZGT.bed.gz processed_file_md5 36ed2483bce9a258f3e1f2dce8f9b4f3 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF948ZGT.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF948ZGT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF948ZGT/@@download/ENCFF948ZGT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF948ZGT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2590d0b3888417ce58f1d4eb103548e2 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 21 years;Reference=NR;External_resources=GEO:GSE177567;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-14,2021-04-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=activated CD8-positive, alpha-beta T cell;ENCODE_cell_slims=T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=activated CD8-positive, alpha-beta T-lymphocyte,activated CD8-positive, alpha-beta T lymphocyte,activated CD8-positive, alpha-beta T-cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0000666;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE CD8+ alpha-beta T cell (repl. 1) Mint-ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR728KQL] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • SK-N-SH NGENCYQOCYWMHQ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq SK-N-SH Histone Show metadata Download track Track metadata identifier NGENCYQOCYWMHQ data_source ENCODE Download track Download number_of_intervals 65,317 bp_covered 109,625,619 output_type pseudoreplicated peaks genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR564IGJ biological_replicate 2 technical_replicate 2_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,971,017 downloaded_date 06/12/2022 release_date 02/02/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF393ZPU.bed.gz processed_file_md5 8be610357dd3f366c39c947413cc3449 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF393ZPU.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF393ZPU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF393ZPU/@@download/ENCFF393ZPU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF393ZPU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 65883cf65ea203d51629ab294f22b54f data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens SK-N-SH;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ccre_inputv2,ENCYCLOPEDIAv2,ccre_inputv1,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 4 years;Reference=PMID:32728046;External_resources=SCREEN-GRCh38:SK-N-SH,GEO:GSE96240;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-19,2015-08-03;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=SKNSH;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Child track_name ENCODE SK-N-SH (repl. 2) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR564IGJ] [Life stage: Child] [Histone ChIP-seq peaks]
H3K27ac • Endothelial cell NGENCYSQPY63KQ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Endothelial cell Histone Show metadata Download track Track metadata identifier NGENCYSQPY63KQ data_source ENCODE Download track Download number_of_intervals 58,322 bp_covered 63,846,745 output_type replicated peaks genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Blood Vessel encode_experiment_id ENCSR111QCU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,696,431 downloaded_date 06/12/2022 release_date 08/25/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF158FGV.bed.gz processed_file_md5 c2ba915685a46ae2a20741bf37c9ccdf wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF158FGV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF158FGV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF158FGV/@@download/ENCFF158FGV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF158FGV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9a3f325ab332c5de2be4ffae316a2d41 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac replicated peaks track_description version=2024;Biosample_summary=Homo sapiens brain microvascular endothelial cell;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE167696;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-28;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=brain microvascular endothelial cell;ENCODE_cell_slims=endothelial cell,epithelial cell,neural cell;ENCODE_system_slims=central nervous system,circulatory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:2000044;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE Endothelial cell (repl. 1, 2) Histone ChIP-seq H3K27ac replicated peaks (narrowPeak) [Experiment: ENCSR111QCU] [Histone ChIP-seq peaks]
H3K27ac • CD8+ alpha-beta naive T cell NGENCYTEUO77FR • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq CD8+ alpha-beta naive T cell Histone Show metadata Download track Track metadata identifier NGENCYTEUO77FR data_source ENCODE Download track Download number_of_intervals 238,705 bp_covered 85,393,544 output_type pseudoreplicated peaks genome_build hg38 cell_type CD8+ alpha-beta naive T cell biosample_type Primary cell biosample_term_id CL:0000900 tissue_category Blood encode_experiment_id ENCSR033WMA biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27ac assay Mint-ChIP-seq file_format bed narrowPeak file_size 6,091,542 downloaded_date 06/12/2022 release_date 03/13/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF590NGR.bed.gz processed_file_md5 7c259b0171cb13b825628715b15fd0da wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF590NGR.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF590NGR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF590NGR/@@download/ENCFF590NGR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF590NGR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b3c41984b892a798bd07faf66a501bd5 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens stimulated activated naive CD8-positive, alpha-beta T cell male adult (36 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 36 years;Reference=NR;External_resources=GEO:GSE208476;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-03-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=stimulated activated naive CD8-positive, alpha-beta T cell;ENCODE_cell_slims=T cell,CD8+ T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0000667;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE CD8+ alpha-beta naive T cell (repl. 1) Mint-ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR033WMA] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • DND-41 NGENCYTQ62ZOI6 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq DND-41 Histone Show metadata Download track Track metadata identifier NGENCYTQ62ZOI6 data_source ENCODE Download track Download number_of_intervals 62,613 bp_covered 64,795,676 output_type pseudoreplicated peaks genome_build hg38 cell_type DND-41 biosample_type Cell line biosample_term_id EFO:0007074 tissue_category Blood encode_experiment_id ENCSR000AQW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,719,991 downloaded_date 06/12/2022 release_date 09/30/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF638RIL.bed.gz processed_file_md5 0f58e0b7931a8aa3e0ffb09869b88399 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF638RIL.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF638RIL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF638RIL/@@download/ENCFF638RIL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF638RIL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 21a54490ad0a7a8dbd27ceac61b1de6b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens DND-41;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ccre_inputv2,ENCYCLOPEDIAv2,ccre_inputv1,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 13 years;Reference=PMID:32728046;External_resources=SCREEN-GRCh38:DND-41,UCSC-ENCODE-hg19:wgEncodeEH002404,GEO:GSM1003462;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-03-06;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=DND-41;ENCODE_cell_slims=T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=ACC525;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007074;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Child track_name ENCODE DND-41 (repl. 1, 2) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AQW] [Life stage: Child] [Histone ChIP-seq peaks]
H3K27ac • KMS-11 NGENCYTYLC6PR3 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq KMS-11 Histone Show metadata Download track Track metadata identifier NGENCYTYLC6PR3 data_source ENCODE Download track Download number_of_intervals 24,362 bp_covered 31,071,437 output_type pseudoreplicated peaks genome_build hg38 cell_type KMS-11 biosample_type Cell line biosample_term_id EFO:0005694 tissue_category Immune encode_experiment_id ENCSR955IXZ biological_replicate 2 technical_replicate 2_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 684,105 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF898DET.bed.gz processed_file_md5 23a3fc2b70ac1bd017dc89c5ef4558c6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF898DET.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF898DET.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF898DET/@@download/ENCFF898DET.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF898DET.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c04c75c4aefeaff6c665cee01b6da3b5 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens KMS-11;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ccre_inputv2,ENCYCLOPEDIAv2,ccre_inputv1,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 67 years;Reference=PMID:32728046;External_resources=GEO:GSE96488,SCREEN-GRCh38:KMS-11;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-11-01,2015-08-03;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=KMS-11;ENCODE_cell_slims=hematopoietic cell;ENCODE_system_slims=skeletal system;ENCODE_biosample_term_synonyms=KMS11,KMS_11;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005694;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE KMS-11 (repl. 2) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR955IXZ] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Natural killer cell NGENCYUZND4WQD • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Natural killer cell Histone Show metadata Download track Track metadata identifier NGENCYUZND4WQD data_source ENCODE Download track Download number_of_intervals 47,857 bp_covered 52,009,102 output_type pseudoreplicated peaks genome_build hg38 cell_type Natural killer cell biosample_type Primary cell biosample_term_id CL:0000623 tissue_category Blood encode_experiment_id ENCSR391EQV biological_replicate 1 technical_replicate 1_2 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,319,892 downloaded_date 06/12/2022 release_date 10/10/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF938PPI.bed.gz processed_file_md5 edb6aee2ba89b73a6aba8afb7e43ee78 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF938PPI.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF938PPI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF938PPI/@@download/ENCFF938PPI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF938PPI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 42024a0bcefc4d49310c87934cf7a5ac data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens natural killer cell male adult (37 years);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=ccre_inputv2,ENCYCLOPEDIAv2,ccre_inputv1,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 37 years;Reference=PMID:32728046;External_resources=GEO:GSM1027288,SCREEN-GRCh38:natural_killer_cell_male_adult_37_years;Project=Roadmap;Award=U01ES017156;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=natural killer cell;ENCODE_cell_slims=NK cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NK cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000623;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Natural killer cell (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR391EQV] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Pancreas NGENCYVHCJFBGQ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Pancreas Histone Show metadata Download track Track metadata identifier NGENCYVHCJFBGQ data_source ENCODE Download track Download number_of_intervals 27,868 bp_covered 34,054,823 output_type pseudoreplicated peaks genome_build hg38 cell_type Pancreas biosample_type Tissue biosample_term_id UBERON:0001264 tissue_category Pancreas encode_experiment_id ENCSR868ZOR biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 725,254 downloaded_date 06/12/2022 release_date 07/23/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF200MOO.bed.gz processed_file_md5 cd762a844ea79948a0b4e1f7b32a574a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF200MOO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF200MOO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF200MOO/@@download/ENCFF200MOO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF200MOO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ecdddb0028a9e7a26d641761057eeae5 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens pancreas tissue female adult (59 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 59 years;Reference=NR;External_resources=GEO:GSE167729;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-09-10,2020-07-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=pancreas;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001264;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Endocrine life_stage Adult track_name ENCODE Pancreas (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR868ZOR] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • WTC11 NGENCYVUVEM4PO • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq WTC11 Histone Show metadata Download track Track metadata identifier NGENCYVUVEM4PO data_source ENCODE Download track Download number_of_intervals 168,717 bp_covered 74,146,442 output_type pseudoreplicated peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR146DPQ biological_replicate 2 technical_replicate 2_1, 2_2 antibody H3K27ac assay Mint-ChIP-seq file_format bed narrowPeak file_size 4,399,616 downloaded_date 06/12/2022 release_date 05/11/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF918WME.bed.gz processed_file_md5 a7ac8e413a71d001cc9fbd197596af99 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF918WME.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF918WME.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF918WME/@@download/ENCFF918WME.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF918WME.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 13298d1049e13e16be2b068edc11143d data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE187116;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-09-27;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=fibroblast,induced pluripotent stem cell,stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 2) Mint-ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR146DPQ] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • GM23248 NGENCYX7RYA3TN • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq GM23248 Histone Show metadata Download track Track metadata identifier NGENCYX7RYA3TN data_source ENCODE Download track Download number_of_intervals 74,892 bp_covered 106,290,834 output_type pseudoreplicated peaks genome_build hg38 cell_type GM23248 biosample_type Cell line biosample_term_id EFO:0005723 tissue_category Skin encode_experiment_id ENCSR007YOT biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 2,231,087 downloaded_date 06/12/2022 release_date 10/21/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF612YDG.bed.gz processed_file_md5 0d71838a4544f37288558c1b4b00ce7e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF612YDG.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF612YDG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF612YDG/@@download/ENCFF612YDG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF612YDG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9b11d2d447d62772946b9f614b5b0a10 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens GM23248;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ccre_inputv2,ENCYCLOPEDIAv2,ccre_inputv1,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE86676,SCREEN-GRCh38:fibroblast_of_arm_male_adult_53_years;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-05-03,2015-08-03;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=GM23248;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=GM23248 cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005723;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Adult track_name ENCODE GM23248 (repl. 1, 2) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR007YOT] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • BLaER1 NGENCYXSS2XIMD • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENCYXSS2XIMD data_source ENCODE Download track Download number_of_intervals 99,210 bp_covered 107,652,358 output_type peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR285NFQ biological_replicate 1 technical_replicate 1_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 2,442,124 downloaded_date 06/12/2022 release_date 01/27/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF237MVK.bed.gz processed_file_md5 060efd2e09a9f164868a80253b6c2894 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF237MVK.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF237MVK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF237MVK/@@download/ENCFF237MVK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF237MVK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b079e52d8df05e7e7ba49d4da3d879f7 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 36 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE256603;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=H036H3K27acX1_peaks.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 1) Histone ChIP-seq H3K27ac peaks (narrowPeak) [Experiment: ENCSR285NFQ] [Histone ChIP-seq peaks]
H3K27ac • Keratinocyte NGENCYYGDQE3TO • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Keratinocyte Histone Show metadata Download track Track metadata identifier NGENCYYGDQE3TO data_source ENCODE Download track Download number_of_intervals 39,993 bp_covered 40,934,055 output_type pseudoreplicated peaks genome_build hg38 cell_type Keratinocyte biosample_type Primary cell biosample_term_id CL:0000312 tissue_category Skin encode_experiment_id ENCSR709ABP biological_replicate 2 technical_replicate 2_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,163,082 downloaded_date 07/10/2025 release_date 10/01/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF349KLQ.bed.gz processed_file_md5 fbbb9ce20d1f28bce9fb6508be398333 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF349KLQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF349KLQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF349KLQ/@@download/ENCFF349KLQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF349KLQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8e01d0be9ae9fe8777f3eaeeb6a5183a data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 2.5 days;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=ccre_inputv2;Life_stage_age=newborn 2-4 days;Reference=NR;External_resources=GEO:GSE175068,SCREEN-GRCh38:foreskin_keratinocyte_male_newborn_2-4_days_treated_with_calcium_donor_ENCDO615NVN;Project=GGR;Award=U01HG007919;Experiment_date_released=2017-10-10;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=foreskin keratinocyte;ENCODE_cell_slims=keratinocyte,epithelial cell;ENCODE_system_slims=reproductive system,integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:1001606;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Newborn track_name ENCODE Keratinocyte (repl. 2) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR709ABP] [Life stage: Newborn] [Histone ChIP-seq peaks]
H3K27ac • A549 NGENCZ2VBXQFAF • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq A549 Histone Show metadata Download track Track metadata identifier NGENCZ2VBXQFAF data_source ENCODE Download track Download number_of_intervals 62,701 bp_covered 98,548,591 output_type replicated peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR242TBH biological_replicate 2, 3 technical_replicate 2_1, 3_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,827,382 downloaded_date 07/10/2025 release_date 10/02/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF313SAA.bed.gz processed_file_md5 347d71d786c0d0e6787ceece270d641e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF313SAA.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF313SAA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF313SAA/@@download/ENCFF313SAA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF313SAA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4daa6eaa8dfca2a2a91eee0e75319fb6 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac replicated peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 1 hour;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91225;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=rep2_vs_rep3.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;Bio_rep=1, 2, 3;Tech_rep=1_1, 2_1, 3_1;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 2, 3) Histone ChIP-seq H3K27ac replicated peaks (narrowPeak) [Experiment: ENCSR242TBH] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • C4-2B NGENCZ3PGIZSTB • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq C4-2B Histone Show metadata Download track Track metadata identifier NGENCZ3PGIZSTB data_source ENCODE Download track Download number_of_intervals 44,659 bp_covered 67,626,388 output_type replicated peaks genome_build hg38 cell_type C4-2B biosample_type Cell line biosample_term_id EFO:0006365 tissue_category Male Reproductive encode_experiment_id ENCSR279KIX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,367,287 downloaded_date 06/12/2022 release_date 09/17/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF647AQW.bed.gz processed_file_md5 a8e28f2dfb4610a4b9323c8c8dbe55e2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF647AQW.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF647AQW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF647AQW/@@download/ENCFF647AQW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF647AQW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f887ce3dc4891599035722d18d50ffb8 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac replicated peaks track_description version=2024;Biosample_summary=Homo sapiens C4-2B;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,ccre_inputv2,ENCYCLOPEDIAv2;Life_stage_age=adult 50 years;Reference=PMID:32728046;External_resources=SCREEN-GRCh38:C4-2B,GEO:GSE105424;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-03-16,2017-02-02;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=C4-2B;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0006365;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Adult track_name ENCODE C4-2B (repl. 1, 2) Histone ChIP-seq H3K27ac replicated peaks (narrowPeak) [Experiment: ENCSR279KIX] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • CD8+ alpha-beta memory cell NGENCZ4JNVDO77 • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq CD8+ alpha-beta memory cell Histone Show metadata Download track Track metadata identifier NGENCZ4JNVDO77 data_source ENCODE Download track Download number_of_intervals 88,085 bp_covered 131,168,976 output_type pseudoreplicated peaks genome_build hg38 cell_type CD8+ alpha-beta memory cell biosample_type Primary cell biosample_term_id CL:0000909 tissue_category Blood encode_experiment_id ENCSR458TOW biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27ac assay Mint-ChIP-seq file_format bed narrowPeak file_size 2,501,228 downloaded_date 06/12/2022 release_date 05/06/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF338FZM.bed.gz processed_file_md5 1b1192e54b9b809e4a2d25cd39967a5c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF338FZM.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF338FZM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF338FZM/@@download/ENCFF338FZM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF338FZM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 cd03d619930f508fb2b095a44448d04c data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens with multiple sclerosis| CD8-positive, alpha-beta memory T cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=YaleImmuneCells;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE177314;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-14,2021-04-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=CD8-positive, alpha-beta memory T cell;ENCODE_cell_slims=T cell,CD8+ T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=CD8-positive, alpha-beta memory T-lymphocyte,CD8-positive, alpha-beta memory T-cell,CD8-positive, alpha-beta memory T lymphocyte;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000909;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE CD8+ alpha-beta memory cell (repl. 1) Mint-ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR458TOW] [Histone ChIP-seq peaks]