H3K27ac • Skeletal muscle tissue NGENCZRK2VSBTZ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Skeletal muscle tissue Histone Show metadata Download track Track metadata identifier NGENCZRK2VSBTZ data_source ENCODE Download track Download number_of_intervals 64,174 bp_covered 90,815,513 output_type pseudoreplicated peaks genome_build hg38 cell_type Skeletal muscle tissue biosample_type Tissue biosample_term_id UBERON:0001134 tissue_category Skeletal Muscle encode_experiment_id ENCSR329FXI biological_replicate 1 technical_replicate 1_2 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,708,710 downloaded_date 06/12/2022 release_date 01/29/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF402DHH.bed.gz processed_file_md5 f5b88a4ed07c11bdfeba942e45cba45e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF402DHH.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF402DHH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF402DHH/@@download/ENCFF402DHH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF402DHH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 633eca99ea06699d2f086e66d165f9ac data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens skeletal muscle tissue tissue female adult (72 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ccre_inputv2,ENCYCLOPEDIAv2,ccre_inputv1,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 72 years;Reference=PMID:32728046;External_resources=GEO:GSM916064,SCREEN-GRCh38:skeletal_muscle_tissue_female_adult_72_years;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=skeletal muscle tissue;ENCODE_cell_slims=NR;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001134;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Muscular life_stage Adult track_name ENCODE Skeletal muscle tissue (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR329FXI] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • CD8+ alpha-beta memory cell NGENCZRSGRYEKZ • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq CD8+ alpha-beta memory cell Histone Show metadata Download track Track metadata identifier NGENCZRSGRYEKZ data_source ENCODE Download track Download number_of_intervals 185,096 bp_covered 110,589,415 output_type pseudoreplicated peaks genome_build hg38 cell_type CD8+ alpha-beta memory cell biosample_type Primary cell biosample_term_id CL:0000909 tissue_category Blood encode_experiment_id ENCSR274VSS biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27ac assay Mint-ChIP-seq file_format bed narrowPeak file_size 4,770,926 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF996CQM.bed.gz processed_file_md5 71ac4927b6cc4ea1f98dc1dc513cb3cd wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF996CQM.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF996CQM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF996CQM/@@download/ENCFF996CQM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF996CQM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 977804db7dfb75de36353c0d9f6fe9db data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens CD8-positive, alpha-beta memory T cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=YaleImmuneCells;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE176958;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-09-05,2020-08-04;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=CD8-positive, alpha-beta memory T cell;ENCODE_cell_slims=T cell,CD8+ T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=CD8-positive, alpha-beta memory T-lymphocyte,CD8-positive, alpha-beta memory T-cell,CD8-positive, alpha-beta memory T lymphocyte;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000909;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE CD8+ alpha-beta memory cell (repl. 1) Mint-ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR274VSS] [Histone ChIP-seq peaks]
H3K27ac • Skin NGENCZST7KLWU6 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Skin Histone Show metadata Download track Track metadata identifier NGENCZST7KLWU6 data_source ENCODE Download track Download number_of_intervals 71,177 bp_covered 98,735,988 output_type pseudoreplicated peaks genome_build hg38 cell_type Skin biosample_type Tissue biosample_term_id UBERON:0002097 tissue_category Skin encode_experiment_id ENCSR683RXF biological_replicate 1 technical_replicate 1_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,857,852 downloaded_date 06/12/2022 release_date 07/23/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF384VRX.bed.gz processed_file_md5 8b2f853bf9a0e9ce4e10596fb0f570de wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF384VRX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF384VRX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF384VRX/@@download/ENCFF384VRX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF384VRX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 50354d38c9298462a225a26f8a3da96b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens with squamous cell carcinoma| skin epidermis tissue male adult (78 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 78 years;Reference=NR;External_resources=GEO:GSE167835;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-09-10,2020-09-03;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=skin epidermis;ENCODE_cell_slims=NR;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=vertebrate epidermis;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001003;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Adult track_name ENCODE Skin (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR683RXF] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • A549 NGENCZULWETORL • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq A549 Histone Show metadata Download track Track metadata identifier NGENCZULWETORL data_source ENCODE Download track Download number_of_intervals 66,243 bp_covered 99,323,191 output_type pseudoreplicated peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR783SNV biological_replicate 1 technical_replicate 1_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,842,097 downloaded_date 06/12/2022 release_date 10/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF325WVC.bed.gz processed_file_md5 135398da5b1eba9a9a4a4c9004688efe wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF325WVC.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF325WVC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF325WVC/@@download/ENCFF325WVC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF325WVC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1669c24bee381739939ae3dcd5092e1e data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens A549;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91337;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR783SNV] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Fibroblast NGENCZUSEIJOMM • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Fibroblast Histone Show metadata Download track Track metadata identifier NGENCZUSEIJOMM data_source ENCODE Download track Download number_of_intervals 63,119 bp_covered 54,705,870 output_type pseudoreplicated peaks genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id ENCSR108NVQ biological_replicate 1 technical_replicate 1_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,430,149 downloaded_date 06/12/2022 release_date 01/29/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF871URW.bed.gz processed_file_md5 2a0e2ee1e9b11fd6b953ff2c3686f80a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF871URW.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF871URW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF871URW/@@download/ENCFF871URW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF871URW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b45008a4fdb1bdd0d578bb345030854f data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens foreskin fibroblast male newborn;Lab=Joseph Costello, UCSF;ENCODE_internal_tags=ccre_inputv2,ENCYCLOPEDIAv2,ccre_inputv1,ENCYCLOPEDIAv1,RegulomeDB_2_2,dbGaP;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM1127076,SCREEN-GRCh38:foreskin_fibroblast_male_newborn_group_1;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=foreskin fibroblast;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=reproductive system,integumental system;ENCODE_biosample_term_synonyms=BJ fibroblast;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:1001608;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Newborn track_name ENCODE Fibroblast (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR108NVQ] [Life stage: Newborn] [Histone ChIP-seq peaks]
H3K27ac • BLaER1 NGENCZVFF5MSXK • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENCZVFF5MSXK data_source ENCODE Download track Download number_of_intervals 103,820 bp_covered 116,892,261 output_type peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR217SDT biological_replicate 1 technical_replicate 1_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 2,522,904 downloaded_date 06/12/2022 release_date 01/28/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF646XFM.bed.gz processed_file_md5 a2edffcf7ee8942e274968a5a109a109 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF646XFM.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF646XFM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF646XFM/@@download/ENCFF646XFM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF646XFM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 763d09c28aff4daa88edf61b60286506 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 48 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE256919;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=H048H3K27acX1_peaks.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 1) Histone ChIP-seq H3K27ac peaks (narrowPeak) [Experiment: ENCSR217SDT] [Histone ChIP-seq peaks]
H3K27ac • BLaER1 NGENCZVNXN4KF6 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENCZVNXN4KF6 data_source ENCODE Download track Download number_of_intervals 61,647 bp_covered 95,604,093 output_type replicated peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR039AHR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,724,796 downloaded_date 05/15/2024 release_date 02/16/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF411AEP.bed.gz processed_file_md5 42fffba2216efc66b902998397170419 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF411AEP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF411AEP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF411AEP/@@download/ENCFF411AEP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF411AEP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 888f5587fbf79daeb709b62dd229add1 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac replicated peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 6 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE256928;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 1, 2) Histone ChIP-seq H3K27ac replicated peaks (narrowPeak) [Experiment: ENCSR039AHR] [Histone ChIP-seq peaks]
H3K27ac • A549 NGENCZVSNYZ35H • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq A549 Histone Show metadata Download track Track metadata identifier NGENCZVSNYZ35H data_source ENCODE Download track Download number_of_intervals 59,651 bp_covered 86,880,103 output_type pseudoreplicated peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR102XUM biological_replicate 3 technical_replicate 3_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,679,688 downloaded_date 07/10/2025 release_date 10/02/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF286UEZ.bed.gz processed_file_md5 a015abfb5aafae7bf86230ac7bd7763b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF286UEZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF286UEZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF286UEZ/@@download/ENCFF286UEZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF286UEZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 fe5a0d479afa46f67092506652c1faf6 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 0.5 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91201;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=rep3-pr1_vs_rep3-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 3) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR102XUM] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Nephron NGENCZYDPOLREY • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Nephron Histone Show metadata Download track Track metadata identifier NGENCZYDPOLREY data_source ENCODE Download track Download number_of_intervals 135,514 bp_covered 199,189,152 output_type replicated peaks genome_build hg38 cell_type Nephron biosample_type Organoid biosample_term_id UBERON:0001285 tissue_category Kidney encode_experiment_id ENCSR519AVF biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1, 2_2 antibody H3K27ac assay Mint-ChIP-seq file_format bed narrowPeak file_size 4,070,335 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF132WEM.bed.gz processed_file_md5 2a753f190963f111c3aa9d42e7e327c8 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF132WEM.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF132WEM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF132WEM/@@download/ENCFF132WEM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF132WEM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 83fff851c411f0ab8bdd019bb91addc6 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27ac replicated peaks track_description version=2024;Biosample_summary=Homo sapiens nephron organoid, 49 days post differentiation;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE177149;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-07-30,2020-07-06;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=nephron;ENCODE_cell_slims=NR;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001285;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Renal life_stage Embryonic track_name ENCODE Nephron (repl. 1, 2) Mint-ChIP-seq H3K27ac-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR519AVF] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27ac • BLaER1 NGENCZYR7JJ5AA • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENCZYR7JJ5AA data_source ENCODE Download track Download number_of_intervals 112,195 bp_covered 130,042,093 output_type peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR938FQG biological_replicate 2 technical_replicate 2_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 2,760,732 downloaded_date 06/12/2022 release_date 01/27/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF123SXH.bed.gz processed_file_md5 c8cd22c863c9c2aaf53c435c9a7c8c43 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF123SXH.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF123SXH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF123SXH/@@download/ENCFF123SXH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF123SXH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 06b7ccee6d357e229e0a00315a8fa9ce data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 9 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE258405;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=H009H3K27acX2_peaks.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 2) Histone ChIP-seq H3K27ac peaks (narrowPeak) [Experiment: ENCSR938FQG] [Histone ChIP-seq peaks]
H3K27ac • Middle frontal area BA46 NGENCZYRW6Z6L7 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Middle frontal area BA46 Histone Show metadata Download track Track metadata identifier NGENCZYRW6Z6L7 data_source ENCODE Download track Download number_of_intervals 84,930 bp_covered 124,945,858 output_type pseudoreplicated peaks genome_build hg38 cell_type Middle frontal area BA46 biosample_type Tissue biosample_term_id UBERON:0006483 tissue_category Brain encode_experiment_id ENCSR495HIT biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 2,034,204 downloaded_date 06/12/2022 release_date 04/10/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF135MSV.bed.gz processed_file_md5 0330e874030c462f2529cf1b983c4b9c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF135MSV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF135MSV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF135MSV/@@download/ENCFF135MSV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF135MSV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f91e4fafd1341f61f24ce88fee26f9e1 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens dorsolateral prefrontal cortex tissue male adult (71 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RushAD,RegulomeDB_2_2;Life_stage_age=adult 71 years;Reference=NR;External_resources=GEO:GSE175300;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-06,2021-04-12;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=dorsolateral prefrontal cortex;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0006483;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Middle frontal area BA46 (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR495HIT] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • KMS-11 NGENCZZHN3GYPB • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq KMS-11 Histone Show metadata Download track Track metadata identifier NGENCZZHN3GYPB data_source ENCODE Download track Download number_of_intervals 35,000 bp_covered 56,059,853 output_type pseudoreplicated peaks genome_build hg38 cell_type KMS-11 biosample_type Cell line biosample_term_id EFO:0005694 tissue_category Immune encode_experiment_id ENCSR955IXZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,017,518 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF676TUW.bed.gz processed_file_md5 7ec4f1127cfe60f88d543a69bb30f928 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF676TUW.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF676TUW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF676TUW/@@download/ENCFF676TUW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF676TUW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2eed6bf5aa785303be16eb5ef5b471d7 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens KMS-11;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ccre_inputv2,ENCYCLOPEDIAv2,ccre_inputv1,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 67 years;Reference=PMID:32728046;External_resources=GEO:GSE96488,SCREEN-GRCh38:KMS-11;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-11-01,2015-08-03;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=KMS-11;ENCODE_cell_slims=hematopoietic cell;ENCODE_system_slims=skeletal system;ENCODE_biosample_term_synonyms=KMS11,KMS_11;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005694;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE KMS-11 (repl. 1, 2) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR955IXZ] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • BLaER1 NGENCZZYQK2SG6 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENCZZYQK2SG6 data_source ENCODE Download track Download number_of_intervals 63,643 bp_covered 98,597,627 output_type replicated peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR413YCI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,756,922 downloaded_date 05/15/2024 release_date 02/16/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF178DXF.bed.gz processed_file_md5 fe0e9039077b29d8f94f34f8501044c1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF178DXF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF178DXF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF178DXF/@@download/ENCFF178DXF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF178DXF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ae51ef69c0a32a7c9775ccd50f2a10c8 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac replicated peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE258103;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 1, 2) Histone ChIP-seq H3K27ac replicated peaks (narrowPeak) [Experiment: ENCSR413YCI] [Histone ChIP-seq peaks]
H3K27ac • Melanocyte NGEPITXO6MVZNA • EpiHK27863956 ChIP-seq Melanocyte Histone Show metadata Download track Track metadata identifier NGEPITXO6MVZNA data_source EpiHK Download track Download number_of_intervals 87,978 bp_covered 88,985,676 output_type peaks genome_build hg38 cell_type Melanocyte biosample_type Primary culture biosample_term_id CL:0000148 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K27ac assay ChIP-seq file_format bed narrowPeak file_size 2,297,339 downloaded_date 03/12/2021 release_date 10/01/2019 date_added_to_filer 01/19/2023 processed_file_download_url https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_EpiHK/ChIP-seq/bed10/hg38/99749.EpiHK.EGAN00002270063.H3K27ac.peak_calls.bed.gz processed_file_md5 7644420d7cc92964330eab900861ca0c wget_command wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_EpiHK/ChIP-seq/bed10/hg38/99749.EpiHK.EGAN00002270063.H3K27ac.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_EpiHK/ChIP-seq/bed10/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_EpiHK/ChIP-seq/bed10/hg38/99749.EpiHK.EGAN00002270063.H3K27ac.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_EpiHK/ChIP-seq/bed10/hg38/ link_out_url https://ihec-epigenomes.org/ raw_file_url https://epigenomesportal.ca/tracks/EpiHK/hg38/99749.EpiHK.EGAN00002270063.H3K27ac.peak_calls.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/IHEC/EpiHK/99749.EpiHK.EGAN00002270063.H3K27ac.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/EpiHK/ raw_file_md5 b9aa0e3501545c8df98b077aab49fdf2 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K27ac peaks track_description version=build 2020-10;Original_cell_type=Melanocyte;ID=EGAN00002270063;disease=NA;donor_id=1712285;donor_age=38;donor_sex=Female;sample_ontology=https://purl.obolibrary.org/obo/CL_0000148;schema=BED6+4;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/EpiHK.html;original_biosample_term_id=CL_0000148;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name EpiHK Melanocyte ChIP-seq H3K27ac-histone-mark peaks (narrowPeak) [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • PU.1+ Microglia NGNOT4UOKWH2AR • Nott 201931727856 Super-enhancer PU.1+ Microglia Enhancer Show metadata Download track Track metadata identifier NGNOT4UOKWH2AR data_source Nott_2019 Download track Download number_of_intervals 627 bp_covered 36,383,399 output_type super-enhancer peaks genome_build hg38 cell_type PU.1+ Microglia biosample_type Tissue biosample_term_id CL:0000129 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody H3K27ac assay Super-enhancer file_format bed bed6-lifted file_size 16,103 downloaded_date 10/02/2020 release_date 02/04/2020 date_added_to_filer 12/03/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_PU1_superEnhancer_L1_lifted.bed.gz processed_file_md5 b092169eb4fb0766f1ebd6df526a7726 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_PU1_superEnhancer_L1_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_PU1_superEnhancer_L1_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/ link_out_url https://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nott_2019/Super_enhancers/PU1_superEnhancer_L1.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/Super_enhancers/PU1_superEnhancer_L1.gz raw_file_md5 b7f0d422ddeea5e5a8b5df151d9f4e21 data_category Enhancer Genomic feature type H3K27ac super-enhancer peaks track_description version=2019;Original_cell_type=microglia;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;notes=Active enhancers were identified by H3K27ac peaks that were outside of H3K4me3 peaks;ages=14yo, 4yo, 18yo;sexes=M;ethnicities=His, Caucasian;brain_regions=Parietal Cortex, Temporal Cortex;pathologies_dx=Residual ateriovenous malformation, Negative pathology, Focal cortical dysplasia type Ic;dataSource_pubmed_id=31727856;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/Nott_2019.html;original_biosample_term_id=Not available;is_hg38_lifted=yes;schema=BED6 system_category Nervous life_stage Adult, Child track_name Nott_2019 PU.1+ Microglia Super-enhancer H3K27ac-histone-mark super-enhancer peaks (bed6-lifted) [Life stage: Adult, Child] [Enhancer]
H3K27ac • Neuron NGNOT67MXK3P2D • Nott 201931727856 Enhancer Neuron Enhancer Show metadata Download track Track metadata identifier NGNOT67MXK3P2D data_source Nott_2019 Download track Download number_of_intervals 141,642 bp_covered 130,290,144 output_type enhancer peaks genome_build hg38 cell_type Neuron biosample_type Tissue biosample_term_id CL:0000540 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody H3K27ac assay Enhancer file_format bed bed3-lifted file_size 2,302,799 downloaded_date 10/02/2020 release_date 02/04/2020 date_added_to_filer 12/03/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_NeuN_enhancers_lifted.bed.gz processed_file_md5 9adca47b36ff7da3bfb0a78ad4d80e16 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_NeuN_enhancers_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_NeuN_enhancers_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/ link_out_url https://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nott_2019/enhancers/NeuN_enhancers.sorted.bigBed -P FILER2/Annotationtracks/Downloads/Nott_2019/enhancers/NeuN_enhancers.sorted.bigBed raw_file_md5 220511817dcfb6f010e3bfd50875a22b data_category Enhancer Genomic feature type H3K27ac enhancer peaks track_description version=2019;Original_cell_type=neurons;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;notes=Active enhancers were identified by H3K27ac peaks that were outside of H3K4me3 peaks;ages=14yo, 4yo, 18yo;sexes=M;ethnicities=His, Caucasian;brain_regions=Parietal Cortex, Temporal Cortex;pathologies_dx=Residual ateriovenous malformation, Negative pathology, Focal cortical dysplasia type Ic;dataSource_pubmed_id=31727856;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/Nott_2019.html;original_biosample_term_id=Not available;is_hg38_lifted=yes;schema=BED3 system_category Nervous life_stage Adult, Child track_name Nott_2019 Neuron Enhancer H3K27ac-histone-mark enhancer peaks (bed3-lifted) [Life stage: Adult, Child] [Enhancer]
H3K27ac • Astrocyte NGNOT7W45S7QOX • Nott 201931727856 Super-enhancer Astrocyte Enhancer Show metadata Download track Track metadata identifier NGNOT7W45S7QOX data_source Nott_2019 Download track Download number_of_intervals 460 bp_covered 40,754,317 output_type super-enhancer peaks genome_build hg38 cell_type Astrocyte biosample_type Tissue biosample_term_id CL:0000127 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody H3K27ac assay Super-enhancer file_format bed bed6-lifted file_size 12,061 downloaded_date 10/02/2020 release_date 02/04/2020 date_added_to_filer 12/03/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_LHX2_superEnhancer_L1_lifted.bed.gz processed_file_md5 1ceed625460a0038575b3fb312a81b7d wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_LHX2_superEnhancer_L1_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_LHX2_superEnhancer_L1_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/ link_out_url https://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nott_2019/Super_enhancers/LHX2_superEnhancer_L1.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/Super_enhancers/LHX2_superEnhancer_L1.gz raw_file_md5 8e0635a999a1fee313d4e48646a9dddc data_category Enhancer Genomic feature type H3K27ac super-enhancer peaks track_description version=2019;Original_cell_type=astrocyte;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;notes=Active enhancers were identified by H3K27ac peaks that were outside of H3K4me3 peaks;ages=14yo, 12yo, 4yo;sexes=M;ethnicities=HIs, His, Caucasian;brain_regions=Temporal Cortex, Frontal Cortex;pathologies_dx=Negative pathology, Cystic encephalomalacia , Focal cortical dysplasia type Ic;dataSource_pubmed_id=31727856;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/Nott_2019.html;original_biosample_term_id=Not available;is_hg38_lifted=yes;schema=BED6 system_category Nervous life_stage Child track_name Nott_2019 Astrocyte Super-enhancer H3K27ac-histone-mark super-enhancer peaks (bed6-lifted) [Life stage: Child] [Enhancer]
H3K27ac • Astrocyte NGNOTDIWP7ZZ75 • Nott 201931727856 Histone ChIP-seq Astrocyte Histone Show metadata Download track Track metadata identifier NGNOTDIWP7ZZ75 data_source Nott_2019 Download track Download number_of_intervals 70,902 bp_covered 92,528,824 output_type peaks genome_build hg38 cell_type Astrocyte biosample_type Tissue biosample_term_id CL:0000127 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody H3K27ac assay Histone ChIP-seq file_format bed bed3-lifted file_size 1,174,896 downloaded_date 10/02/2020 release_date 02/04/2020 date_added_to_filer 12/03/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_LHX2_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz processed_file_md5 16d17f95ad4755e6b660faf3576c2946 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_LHX2_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_LHX2_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/ link_out_url https://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nott_2019/H3K27/LHX2_optimal_peak_IDR_ENCODE.H3K27.sorted.bigBed.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/H3K27/LHX2_optimal_peak_IDR_ENCODE.H3K27.sorted.bigBed.gz raw_file_md5 0176dc7dea4e18131e9b56a9c475050b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac peaks track_description version=2019;Original_cell_type=LHX2_optimal_peak_IDR_ENCODE.H3K27;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;ages=12yo, 14yo, 4yo;sexes=M;ethnicities=Caucasian, HIs, His;brain_regions=Frontal Cortex, Temporal Cortex;pathologies_dx=Cystic encephalomalacia , Focal cortical dysplasia type Ic, Negative pathology;dataSource_pubmed_id=31727856;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/Nott_2019.html;original_biosample_term_id=Not available;is_hg38_lifted=yes;schema=BED3 system_category Nervous life_stage Child track_name Nott_2019 Astrocyte Histone ChIP-seq H3K27ac peaks (bed3-lifted) [Life stage: Child] [Histone ChIP-seq peaks]
H3K27ac • Astrocyte NGNOTI4BI3DBMZ • Nott 201931727856 Enhancer Astrocyte Enhancer Show metadata Download track Track metadata identifier NGNOTI4BI3DBMZ data_source Nott_2019 Download track Download number_of_intervals 63,793 bp_covered 68,540,614 output_type enhancer peaks genome_build hg38 cell_type Astrocyte biosample_type Tissue biosample_term_id CL:0000127 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody H3K27ac assay Enhancer file_format bed bed3-lifted file_size 1,048,902 downloaded_date 10/02/2020 release_date 02/04/2020 date_added_to_filer 12/03/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_LHX2_enhancers_lifted.bed.gz processed_file_md5 eecea1fad502c7be39819a055c0937af wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_LHX2_enhancers_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_LHX2_enhancers_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/ link_out_url https://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nott_2019/enhancers/LHX2_enhancers.sorted.bigBed -P FILER2/Annotationtracks/Downloads/Nott_2019/enhancers/LHX2_enhancers.sorted.bigBed raw_file_md5 33f70e542485065ce46412039fef9f69 data_category Enhancer Genomic feature type H3K27ac enhancer peaks track_description version=2019;Original_cell_type=astrocyte;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;notes=Active enhancers were identified by H3K27ac peaks that were outside of H3K4me3 peaks;ages=14yo, 12yo, 4yo;sexes=M;ethnicities=HIs, His, Caucasian;brain_regions=Temporal Cortex, Frontal Cortex;pathologies_dx=Negative pathology, Cystic encephalomalacia , Focal cortical dysplasia type Ic;dataSource_pubmed_id=31727856;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/Nott_2019.html;original_biosample_term_id=Not available;is_hg38_lifted=yes;schema=BED3 system_category Nervous life_stage Child track_name Nott_2019 Astrocyte Enhancer H3K27ac-histone-mark enhancer peaks (bed3-lifted) [Life stage: Child] [Enhancer]
H3K27ac • PU.1+ Microglia NGNOTLJOQ3CHZ2 • Nott 201931727856 Histone ChIP-seq PU.1+ Microglia Histone Show metadata Download track Track metadata identifier NGNOTLJOQ3CHZ2 data_source Nott_2019 Download track Download number_of_intervals 48,791 bp_covered 82,267,056 output_type peaks genome_build hg38 cell_type PU.1+ Microglia biosample_type Tissue biosample_term_id CL:0000129 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody H3K27ac assay Histone ChIP-seq file_format bed bed3-lifted file_size 822,603 downloaded_date 10/02/2020 release_date 02/04/2020 date_added_to_filer 12/03/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_PU1_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz processed_file_md5 dcbea562195c6dc5e6592df34e88227e wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_PU1_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_PU1_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/ link_out_url https://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nott_2019/H3K27/PU1_optimal_peak_IDR_ENCODE.H3K27.sorted.bigBed.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/H3K27/PU1_optimal_peak_IDR_ENCODE.H3K27.sorted.bigBed.gz raw_file_md5 2eb92bd0cca0d176b2059df8a9847683 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac peaks track_description version=2019;Original_cell_type=PU1_optimal_peak_IDR_ENCODE.H3K27;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;ages=14yo, 18yo, 4yo;sexes=M;ethnicities=Caucasian, His;brain_regions=Parietal Cortex, Temporal Cortex;pathologies_dx=Focal cortical dysplasia type Ic, Negative pathology, Residual ateriovenous malformation;dataSource_pubmed_id=31727856;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/Nott_2019.html;original_biosample_term_id=Not available;is_hg38_lifted=yes;schema=BED3 system_category Nervous life_stage Adult, Child track_name Nott_2019 PU.1+ Microglia Histone ChIP-seq H3K27ac peaks (bed3-lifted) [Life stage: Adult, Child] [Histone ChIP-seq peaks]