Nucleus accumbens NGADBGBNAXBXUB • ATACdb v1.03 ATAC-seq Nucleus accumbens TFBS Show metadata identifier NGADBGBNAXBXUB data_source ATACdb_v1.03 Download track Download number_of_intervals 331,265 bp_covered 4,570,997 output_type transcription factor binding sites genome_build hg38 cell_type Nucleus accumbens biosample_type Tissue biosample_term_id UBERON:0001882 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 11,356,374 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0051_hg38_motif_binding_sites.bed.gz processed_file_md5 a116aceab6808ece958c220673365536 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0051_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0051_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0051;Biosample_Type=Tissue;Tissue_Type=Brain;Biosample_Name=nucleus accumbens;Cancer_Type=Normal;Region_Number=134755;Length=49830.406 kb;GEO_SRA=SRR5343871;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab system_category Nervous life_stage Unknown track_name ATACdb_v1.03 Nucleus accumbens ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
MCF-7 NGADBGCML3WFYI • ATACdb v1.03 ATAC-seq MCF-7 Accessible chromatin Show metadata identifier NGADBGCML3WFYI data_source ATACdb_v1.03 Download track Download number_of_intervals 35,793 bp_covered 12,740,492 output_type accessible chromatin region genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,136,368 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1386_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 8bb88b0677d42098b6f9c36dff8152b7 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1386_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1386_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1386.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1386.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 2daec07e47018391790d42c8c01cc44b data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1386;Biosample_Type=Cell Line;Tissue_Type=Mammary Gland;Biosample_Name=MCF7;Cancer_Type=Breast cancer;Region_Number=35840;Length=12719.177 kb;GEO_SRA=SRR5638552;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwan system_category Reproductive life_stage Unknown track_name ATACdb_v1.03 MCF-7 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
FL3 NGADBGDW6Q36ZZ • ATACdb v1.03 ATAC-seq FL3 Accessible chromatin Show metadata identifier NGADBGDW6Q36ZZ data_source ATACdb_v1.03 Download track Download number_of_intervals 82,717 bp_covered 46,278,927 output_type accessible chromatin region genome_build hg38 cell_type FL3 biosample_type Cell line biosample_term_id Not available tissue_category Skin encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 2,685,011 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1150_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 29bab3f42973c995820f335107391af3 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1150_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1150_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1150.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1150.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 ef0e995f2e1102f710bac493db8971ad data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1150;Biosample_Type=Cell Line;Tissue_Type=Fibroblast;Biosample_Name=FL3;Cancer_Type=Other;Region_Number=82804;Length=46345.158 kb;GEO_SRA=SRR3066451;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system_category Integumentary life_stage Unknown track_name ATACdb_v1.03 FL3 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Epithelium NGADBGDXQ4TCVK • ATACdb v1.03 ATAC-seq Epithelium Accessible chromatin Show metadata identifier NGADBGDXQ4TCVK data_source ATACdb_v1.03 Download track Download number_of_intervals 1,713 bp_covered 589,168 output_type accessible chromatin region genome_build hg38 cell_type Epithelium biosample_type Primary cell biosample_term_id NCIT:C12710 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 52,877 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0858_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 fc7f592249480255f25b1b5468dcbcb7 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0858_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0858_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0858.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0858.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 db18b0b1b595f8c3177c0e7921c39dde data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0858;Biosample_Type=Primary Cell;Tissue_Type=Bronchial;Biosample_Name=AAEC;Cancer_Type=Asthma;Region_Number=1713;Length=589.171 kb;GEO_SRA=SRR6290071;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GA system_category Respiratory life_stage Unknown track_name ATACdb_v1.03 Epithelium ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Fibroblast NGADBGE2YCVR6X • ATACdb v1.03 ATAC-seq Fibroblast TFBS Show metadata identifier NGADBGE2YCVR6X data_source ATACdb_v1.03 Download track Download number_of_intervals 169,888 bp_covered 2,306,156 output_type transcription factor binding sites genome_build hg38 cell_type Fibroblast biosample_type Cell line biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 5,755,934 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0950_hg38_motif_binding_sites.bed.gz processed_file_md5 7196066fa76a552859ae9879b3f58f86 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0950_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0950_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0950;Biosample_Type=Cell Line;Tissue_Type=Fibroblast;Biosample_Name=GM02171;Cancer_Type=Normal;Region_Number=63431;Length=19642.994 kb;GEO_SRA=SRR5878906;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.or system_category Integumentary life_stage Unknown track_name ATACdb_v1.03 Fibroblast ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Monocyte NGADBGEAMFTQK7 • ATACdb v1.03 ATAC-seq Monocyte Accessible chromatin Show metadata identifier NGADBGEAMFTQK7 data_source ATACdb_v1.03 Download track Download number_of_intervals 31,453 bp_covered 13,812,164 output_type accessible chromatin region genome_build hg38 cell_type Monocyte biosample_type Primary cell biosample_term_id CL:0000576 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,029,128 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0447_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 9b199312236d041cd379bc7c53edda05 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0447_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0447_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0447.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0447.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 76711c8e1cb0174faa6a03ca36efaa7d data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0447;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=Monocyte;Cancer_Type=Normal;Region_Number=31513;Length=13839.616 kb;GEO_SRA=GSM3231154;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Monocyte ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Adipose NGADBGEDYS2JGQ • ATACdb v1.03 ATAC-seq Adipose TFBS Show metadata identifier NGADBGEDYS2JGQ data_source ATACdb_v1.03 Download track Download number_of_intervals 154,984 bp_covered 2,104,164 output_type transcription factor binding sites genome_build hg38 cell_type Adipose biosample_type Tissue biosample_term_id NCIT:C12472 tissue_category Adipose encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 5,609,261 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0400_hg38_motif_binding_sites.bed.gz processed_file_md5 d9d67a49d68556137db9d31341136f37 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0400_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0400_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0400;Biosample_Type=Tissue;Tissue_Type=Adipose;Biosample_Name=Adipose;Cancer_Type=Normal;Region_Number=64998;Length=23507.916 kb;GEO_SRA=SRR7690521;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB system_category Integumentary life_stage Unknown track_name ATACdb_v1.03 Adipose ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Temporal cortex NGADBGEGGFK637 • ATACdb v1.03 ATAC-seq Temporal cortex TFBS Show metadata identifier NGADBGEGGFK637 data_source ATACdb_v1.03 Download track Download number_of_intervals 74,679 bp_covered 993,274 output_type transcription factor binding sites genome_build hg38 cell_type Temporal cortex biosample_type Not applicable biosample_term_id UBERON:0016538 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 2,426,905 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0526_hg38_motif_binding_sites.bed.gz processed_file_md5 785521fbec1049993ec64b186e15f19e wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0526_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0526_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0526;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=posterior superior temporal cortex;Cancer_Type=Other;Region_Number=19981;Length=7507.099 kb;GEO_SRA=SRR5367810;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf system_category Nervous life_stage Unknown track_name ATACdb_v1.03 Temporal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Frontal cortex NGADBGEQ2T6KI2 • ATACdb v1.03 ATAC-seq Frontal cortex Accessible chromatin Show metadata identifier NGADBGEQ2T6KI2 data_source ATACdb_v1.03 Download track Download number_of_intervals 6,603 bp_covered 1,882,260 output_type accessible chromatin region genome_build hg38 cell_type Frontal cortex biosample_type Tissue biosample_term_id UBERON:0001870 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 203,252 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1343_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 522d63ceee90e64e13c1f5dfc0151825 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1343_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1343_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1343.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1343.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 51678c9494e486c34c6c61f016f8742e data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1343;Biosample_Type=Tissue;Tissue_Type=Frontal;Biosample_Name=Frontal cortex;Cancer_Type=Frontotemporal degeneration;Region_Number=6620;Length=1887.335 kb;GEO_SRA=SRR8571966;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https: system_category Nervous life_stage Unknown track_name ATACdb_v1.03 Frontal cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Adipose NGADBGER3A6UQA • ATACdb v1.03 ATAC-seq Adipose TFBS Show metadata identifier NGADBGER3A6UQA data_source ATACdb_v1.03 Download track Download number_of_intervals 56,627 bp_covered 751,739 output_type transcription factor binding sites genome_build hg38 cell_type Adipose biosample_type Tissue biosample_term_id NCIT:C12472 tissue_category Adipose encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 1,717,370 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1443_hg38_motif_binding_sites.bed.gz processed_file_md5 64fb6483491702cf9a258dc97bee8296 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1443_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1443_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1443;Biosample_Type=Tissue;Tissue_Type=Adipose;Biosample_Name=Adipose;Cancer_Type=Other;Region_Number=10764;Length=5368.509 kb;GEO_SRA=SRR8255926;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/F system_category Integumentary life_stage Unknown track_name ATACdb_v1.03 Adipose ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
T-helper 17 cell NGADBGF46PYSEV • ATACdb v1.03 ATAC-seq T-helper 17 cell TFBS Show metadata identifier NGADBGF46PYSEV data_source ATACdb_v1.03 Download track Download number_of_intervals 55,602 bp_covered 737,440 output_type transcription factor binding sites genome_build hg38 cell_type T-helper 17 cell biosample_type Primary cell biosample_term_id CL:0000899 tissue_category Immune encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 1,750,778 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0910_hg38_motif_binding_sites.bed.gz processed_file_md5 f23f7d60197c5f65108d04ff18bb87ad wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0910_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0910_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0910;Biosample_Type=Primary Cell;Tissue_Type=Cytokine-secreting T helper cell (Th) counterparts;Biosample_Name=Th17;Cancer_Type=Other;Region_Number=12132;Length=4815.229 kb;GEO_SRA=SRR5831520;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_ackno system_category Lymphatic life_stage Unknown track_name ATACdb_v1.03 T-helper 17 cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Induced pluripotent stem cell NGADBGF5WK3E7E • ATACdb v1.03 ATAC-seq Induced pluripotent stem cell TFBS Show metadata identifier NGADBGF5WK3E7E data_source ATACdb_v1.03 Download track Download number_of_intervals 171,254 bp_covered 2,311,729 output_type transcription factor binding sites genome_build hg38 cell_type Induced pluripotent stem cell biosample_type Stem cell biosample_term_id EFO:0004905 tissue_category iPSC encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 5,399,238 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0808_hg38_motif_binding_sites.bed.gz processed_file_md5 0adb068c773ffb393e8b72efcdaf883c wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0808_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0808_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0808;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA18853;Cancer_Type=Other;Region_Number=36262;Length=21543.643 kb;GEO_SRA=SRR6412451;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/ system_category Stem Cell life_stage Unknown track_name ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Keratinocyte NGADBGFNUCVH7R • ATACdb v1.03 ATAC-seq Keratinocyte Accessible chromatin Show metadata identifier NGADBGFNUCVH7R data_source ATACdb_v1.03 Download track Download number_of_intervals 74,764 bp_covered 54,465,876 output_type accessible chromatin region genome_build hg38 cell_type Keratinocyte biosample_type Primary cell biosample_term_id CL:0000312 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 2,448,384 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1230_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 fb2a38b411e430e603b3bc98523ce027 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1230_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1230_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1230.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1230.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 740f3114fe111569305975035537ce1d data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1230;Biosample_Type=Primary Cell;Tissue_Type=keratinocyte;Biosample_Name=CTRL;Cancer_Type=Normal;Region_Number=74876;Length=54539.777 kb;GEO_SRA=SRR1944626;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab. system_category Integumentary life_stage Unknown track_name ATACdb_v1.03 Keratinocyte ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
B cell NGADBGG5L5UTWJ • ATACdb v1.03 ATAC-seq B cell Accessible chromatin Show metadata identifier NGADBGG5L5UTWJ data_source ATACdb_v1.03 Download track Download number_of_intervals 51,271 bp_covered 31,446,590 output_type accessible chromatin region genome_build hg38 cell_type B cell biosample_type Not applicable biosample_term_id CL:0000236 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,731,031 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0242_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 ce82ba3365165cfa93b6184dc4f8e21c wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0242_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0242_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0242.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0242.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 91964ae468ffaee1422764526c58658b data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0242;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Bulk_B;Cancer_Type=Normal;Region_Number=51385;Length=31505.79 kb;GEO_SRA=SRR7650772;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILE system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 B cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
PC-9 NGADBGG7IJW245 • ATACdb v1.03 ATAC-seq PC-9 Accessible chromatin Show metadata identifier NGADBGG7IJW245 data_source ATACdb_v1.03 Download track Download number_of_intervals 61,389 bp_covered 21,998,303 output_type accessible chromatin region genome_build hg38 cell_type PC-9 biosample_type Cell line biosample_term_id EFO:0002847 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,964,556 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0978_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 df5eb61b5f0b9f49b052515be6572d5b wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0978_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0978_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0978.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0978.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 b0fdc2d34d5546f755bf9bbb7ea42458 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0978;Biosample_Type=Cell Line;Tissue_Type=Lung;Biosample_Name=PC-9;Cancer_Type=Lung cancer;Region_Number=61446;Length=22038.996 kb;GEO_SRA=SRR5800658;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GA system_category Respiratory life_stage Unknown track_name ATACdb_v1.03 PC-9 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
HCASMC NGADBGGHDX5ZYW • ATACdb v1.03 ATAC-seq HCASMC Accessible chromatin Show metadata identifier NGADBGGHDX5ZYW data_source ATACdb_v1.03 Download track Download number_of_intervals 145,710 bp_covered 92,383,365 output_type accessible chromatin region genome_build hg38 cell_type HCASMC biosample_type Tissue biosample_term_id CL:0002592 tissue_category Blood Vessel encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 4,645,769 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1162_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 8f26d662f5eac6ab9751fa257a09bfca wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1162_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1162_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1162.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1162.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 dd7aba56bb81d58180bedc5d2abfdb2b data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1162;Biosample_Type=Tissue;Tissue_Type=Artery;Biosample_Name=HCASMC;Cancer_Type=Normal;Region_Number=145846;Length=92462.973 kb;GEO_SRA=SRR2378588;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 HCASMC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
CD4+ NGADBGGMMP4KMU • ATACdb v1.03 ATAC-seq CD4+ Accessible chromatin Show metadata identifier NGADBGGMMP4KMU data_source ATACdb_v1.03 Download track Download number_of_intervals 11,125 bp_covered 4,231,879 output_type accessible chromatin region genome_build hg38 cell_type CD4+ biosample_type Primary cell biosample_term_id CL:0000492 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 355,531 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1261_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 60c36c29fbe5021db2b2d5e45aa78fbd wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1261_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1261_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1261.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1261.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 6dd3e83f1d1607caf6625d84b08d639c data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1261;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Normal;Region_Number=11143;Length=4234.454 kb;GEO_SRA=SRR1556340;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.o system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
THP-1 NGADBGGS54MZCJ • ATACdb v1.03 ATAC-seq THP-1 Accessible chromatin Show metadata identifier NGADBGGS54MZCJ data_source ATACdb_v1.03 Download track Download number_of_intervals 39,883 bp_covered 22,078,218 output_type accessible chromatin region genome_build hg38 cell_type THP-1 biosample_type Cell line biosample_term_id EFO:0001253 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,315,538 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1078_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 53a1994459b98b89c9d7bdb364bd4696 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1078_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1078_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1078.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1078.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 4169122dd1fc69aa51b764986eac13bb data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1078;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=THP-1;Cancer_Type=Other;Region_Number=39945;Length=22111.591 kb;GEO_SRA=SRR5359605;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/F system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 THP-1 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
YB5 NGADBGHQHTB7AO • ATACdb v1.03 ATAC-seq YB5 Accessible chromatin Show metadata identifier NGADBGHQHTB7AO data_source ATACdb_v1.03 Download track Download number_of_intervals 8,364 bp_covered 3,430,863 output_type accessible chromatin region genome_build hg38 cell_type YB5 biosample_type Cell line biosample_term_id Not available tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 265,682 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0152_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 340eef04bba582d6c89406de589dd9b5 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0152_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0152_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0152.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0152.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 aedbb92511da8f3f599ab2365e3135d5 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0152;Biosample_Type=Cell Line;Tissue_Type=Colon;Biosample_Name=YB5;Cancer_Type=Colon cancer;Region_Number=8377;Length=3437.54 kb;GEO_SRA=SRR7060328;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB system_category Digestive life_stage Unknown track_name ATACdb_v1.03 YB5 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Fibroblast NGADBGJIFW4VYS • ATACdb v1.03 ATAC-seq Fibroblast TFBS Show metadata identifier NGADBGJIFW4VYS data_source ATACdb_v1.03 Download track Download number_of_intervals 153,737 bp_covered 2,130,239 output_type transcription factor binding sites genome_build hg38 cell_type Fibroblast biosample_type Cell line biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 5,956,461 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0147_hg38_motif_binding_sites.bed.gz processed_file_md5 6c9761ac0eabaff5b33723b80540523a wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0147_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0147_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0147;Biosample_Type=Cell Line;Tissue_Type=Skin;Biosample_Name=Fibroblast;Cancer_Type=CAID Syndrome;Region_Number=65917;Length=33666.6 kb;GEO_SRA=SRR6726095;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab. system_category Integumentary life_stage Unknown track_name ATACdb_v1.03 Fibroblast ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]