H3K27me3 • Naive thymus-derived CD8+ alpha-beta T cell NGENC2454H5UPK • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Naive thymus-derived CD8+ alpha-beta T cell Histone Show metadata Download track Track metadata identifier NGENC2454H5UPK data_source ENCODE Download track Download number_of_intervals 274,592 bp_covered 101,730,216 output_type pseudoreplicated peaks genome_build hg38 cell_type Naive thymus-derived CD8+ alpha-beta T cell biosample_type Primary cell biosample_term_id CL:0000900 tissue_category Blood encode_experiment_id ENCSR368UYD biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 6,951,141 downloaded_date 06/12/2022 release_date 06/18/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF501ZOP.bed.gz processed_file_md5 2f8c5f2be1dff979a3bc5c4f12f3432f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF501ZOP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF501ZOP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF501ZOP/@@download/ENCFF501ZOP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF501ZOP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 16a041726e0f745b4cb66fcd9c3cdee4 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (42 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 42 years;Reference=NR;External_resources=GEO:GSE187309;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-06-24;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=naive thymus-derived CD8-positive, alpha-beta T cell;ENCODE_cell_slims=T cell,CD8+ T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=naive thymus-dervied CD8-positive, alpha-beta T-cell,naive thymus-dervied CD8-positive, alpha-beta T lymphocyte,naive thymus-dervied CD8-positive, alpha-beta T-lymphocyte;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000900;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Naive thymus-derived CD8+ alpha-beta T cell (repl. 1) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR368UYD] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • NCI-H929 NGENC25BM2M5DO • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq NCI-H929 Histone Show metadata Download track Track metadata identifier NGENC25BM2M5DO data_source ENCODE Download track Download number_of_intervals 13,913 bp_covered 10,345,541 output_type pseudoreplicated peaks genome_build hg38 cell_type NCI-H929 biosample_type Cell line biosample_term_id EFO:0001221 tissue_category Immune encode_experiment_id ENCSR359BGB biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 289,357 downloaded_date 06/12/2022 release_date 08/25/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF788JYE.bed.gz processed_file_md5 4a13f1e45838c9ba79cd3a80d5802524 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF788JYE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF788JYE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF788JYE/@@download/ENCFF788JYE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF788JYE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 64aa2d5b49e540a1d0478d511389ef35 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens NCI-H929;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 62 years;Reference=NR;External_resources=GEO:GSE167675;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-28,2021-03-29;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=NCI-H929;ENCODE_cell_slims=B cell,cancer cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001221;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE NCI-H929 (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR359BGB] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • Middle frontal area BA46 NGENC25OE57DCI • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Middle frontal area BA46 Histone Show metadata Download track Track metadata identifier NGENC25OE57DCI data_source ENCODE Download track Download number_of_intervals 62,551 bp_covered 66,719,075 output_type pseudoreplicated peaks genome_build hg38 cell_type Middle frontal area BA46 biosample_type Tissue biosample_term_id UBERON:0006483 tissue_category Brain encode_experiment_id ENCSR391SNO biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,238,258 downloaded_date 06/12/2022 release_date 04/10/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF146SGG.bed.gz processed_file_md5 d5dc4174390d1f7d87e44948c34cabf9 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF146SGG.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF146SGG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF146SGG/@@download/ENCFF146SGG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF146SGG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f514f1232f5703062b737912ea022dd3 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens dorsolateral prefrontal cortex tissue male adult (87 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RushAD,RegulomeDB_2_2;Life_stage_age=adult 87 years;Reference=NR;External_resources=GEO:GSE175222;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-06,2021-04-12;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=dorsolateral prefrontal cortex;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0006483;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Middle frontal area BA46 (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR391SNO] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • Gastrocnemius medialis NGENC26GVQPCT2 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Gastrocnemius medialis Histone Show metadata Download track Track metadata identifier NGENC26GVQPCT2 data_source ENCODE Download track Download number_of_intervals 56,508 bp_covered 45,614,147 output_type pseudoreplicated peaks genome_build hg38 cell_type Gastrocnemius medialis biosample_type Tissue biosample_term_id UBERON:0011907 tissue_category Skeletal Muscle encode_experiment_id ENCSR423LXQ biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,045,094 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF784UEV.bed.gz processed_file_md5 3cde72f5d294fe42cbb6d87fbc6d4195 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF784UEV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF784UEV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF784UEV/@@download/ENCFF784UEV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF784UEV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5e2de445418b8cc1a8a6eb89c8875a98 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens gastrocnemius medialis tissue male adult (54 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2,ENTEx;Life_stage_age=adult 54 years;Reference=PMID:32728046;External_resources=GEO:GSE175242;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-01-06,2016-06-02;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=gastrocnemius medialis;ENCODE_cell_slims=NR;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=medial head of gastrocnemius muscle,medial head of gastrocnemius,caput mediale (musculus gastrocnemius),caput mediale musculus gastrocnemii;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0011907;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Muscular life_stage Adult track_name ENCODE Gastrocnemius medialis (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR423LXQ] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • GM23338 NGENC2A5LA3NU4 • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq GM23338 Histone Show metadata Download track Track metadata identifier NGENC2A5LA3NU4 data_source ENCODE Download track Download number_of_intervals 91,860 bp_covered 54,429,280 output_type replicated peaks genome_build hg38 cell_type GM23338 biosample_type Cell line biosample_term_id EFO:0007950 tissue_category iPSC encode_experiment_id ENCSR695NNR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 2,609,124 downloaded_date 05/15/2024 release_date 09/15/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF157LBR.bed.gz processed_file_md5 74e4647e641e26e02e9524c474c1f428 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF157LBR.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF157LBR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF157LBR/@@download/ENCFF157LBR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF157LBR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8a555b7e195af60fbc0035fb6f980c19 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens GM23338;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE257811;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-07-18,2020-07-06;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM23338;ENCODE_cell_slims=induced pluripotent stem cell,stem cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;Bio_rep=1, 2, 3;Tech_rep=1_1, 1_2, 2_1, 2_2, 3_1, 3_2;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007950;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Stem Cell life_stage Adult track_name ENCODE GM23338 (repl. 1, 2) Mint-ChIP-seq H3K27me3-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR695NNR] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • Mucosa NGENC2ARQS2GCD • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mucosa Histone Show metadata Download track Track metadata identifier NGENC2ARQS2GCD data_source ENCODE Download track Download number_of_intervals 39,838 bp_covered 35,515,863 output_type pseudoreplicated peaks genome_build hg38 cell_type Mucosa biosample_type Tissue biosample_term_id UBERON:0000344 tissue_category Digestive encode_experiment_id ENCSR770GNM biological_replicate 1 technical_replicate 1_4 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 843,834 downloaded_date 06/12/2022 release_date 01/29/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF477WBO.bed.gz processed_file_md5 da56d4b9f520db2ebf18c4f0df17a95c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF477WBO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF477WBO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF477WBO/@@download/ENCFF477WBO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF477WBO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 71cc42078c37ea9c7657cb3bce3f2522 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens mucosa of stomach tissue male adult (59 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 59 years;Reference=PMID:32728046;External_resources=GEO:GSM772969;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=mucosa of stomach;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=gastric mucous membrane,stomach mucosa of organ,mucosa of ventriculus,organ mucosa of ventriculus,gastric mucosa,ventriculus mucous membrane,stomach mucous membrane,ventriculus organ mucosa,mucosa of organ of ventriculus,tunica mucosa (gaster),mucous membrane of stomach,mucous membrane of ventriculus,ventriculus mucosa,tunica mucosa gastricae,ventriculus mucosa of organ,stomach mucosa,stomach organ mucosa,mucosa of organ of stomach,organ mucosa of stomach;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001199;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE Mucosa (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR770GNM] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • BLaER1 NGENC2BLQVJOOC • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENC2BLQVJOOC data_source ENCODE Download track Download number_of_intervals 71,074 bp_covered 107,095,603 output_type peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR992WXP biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,566,619 downloaded_date 06/12/2022 release_date 01/27/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF167MPX.bed.gz processed_file_md5 8a5e51b93f597dec9d6fabfab29fbd92 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF167MPX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF167MPX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF167MPX/@@download/ENCFF167MPX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF167MPX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b499c220f34d855d75dc1fdb2ecc0d9e data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 6 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE259056;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=H006H3K27me3X1_peaks.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 1) Histone ChIP-seq H3K27me3 peaks (narrowPeak) [Experiment: ENCSR992WXP] [Histone ChIP-seq peaks]
H3K27me3 • Lung NGENC2DQGMRGKR • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Lung Histone Show metadata Download track Track metadata identifier NGENC2DQGMRGKR data_source ENCODE Download track Download number_of_intervals 33,087 bp_covered 36,533,195 output_type pseudoreplicated peaks genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id ENCSR337LGY biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 660,307 downloaded_date 06/12/2022 release_date 06/06/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF200NVU.bed.gz processed_file_md5 23023d60e20eed6a5447bc161d66d79a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF200NVU.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF200NVU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF200NVU/@@download/ENCFF200NVU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF200NVU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c07b37704736f5d4d9f71a7761fd7d65 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens upper lobe of right lung tissue male adult (60 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 60 years;Reference=NR;External_resources=GEO:GSE208913;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-06-09,2022-06-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=upper lobe of right lung;ENCODE_cell_slims=NR;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=right upper lobe of lung,lobus superior pulmonis dextri,lobus superior (pulmo dexter),right upper lobe,upper lobe of right lung,superior lobe of right lung,right cranial lobe of lung,right lung cranial lobe;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002170;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE Lung (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR337LGY] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • H1-hESC NGENC2DXPV347M • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H1-hESC Histone Show metadata Download track Track metadata identifier NGENC2DXPV347M data_source ENCODE Download track Download number_of_intervals 42,418 bp_covered 20,324,471 output_type pseudoreplicated peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR186OBR biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 964,725 downloaded_date 06/12/2022 release_date 11/25/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF856AIT.bed.gz processed_file_md5 9cd65d40afb00c07566dd73172ca97d3 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF856AIT.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF856AIT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF856AIT/@@download/ENCFF856AIT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF856AIT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 88e413ad199090dfd033276046d4cf14 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM605308,GEO:GSM466734;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR186OBR] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • Memory B cell NGENC2EQAMN7AA • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Memory B cell Histone Show metadata Download track Track metadata identifier NGENC2EQAMN7AA data_source ENCODE Download track Download number_of_intervals 187,937 bp_covered 105,374,376 output_type pseudoreplicated peaks genome_build hg38 cell_type Memory B cell biosample_type Primary cell biosample_term_id CL:0000787 tissue_category Blood encode_experiment_id ENCSR485YGX biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 4,852,259 downloaded_date 06/12/2022 release_date 03/13/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF359DHX.bed.gz processed_file_md5 89f65eaf391b33b953e926819f0a103a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF359DHX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF359DHX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF359DHX/@@download/ENCFF359DHX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF359DHX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 69f565e3c6c2fad1769ef0fe0644c9ae data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens IgD-negative memory B cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE209437;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-03-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=IgD-negative memory B cell;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=IgD- memory B cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0001053;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE Memory B cell (repl. 1) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR485YGX] [Histone ChIP-seq peaks]
H3K27me3 • Epithelium NGENC2EWI3SRXS • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Epithelium Histone Show metadata Download track Track metadata identifier NGENC2EWI3SRXS data_source ENCODE Download track Download number_of_intervals 6,648 bp_covered 6,271,075 output_type pseudoreplicated peaks genome_build hg38 cell_type Epithelium biosample_type Tissue biosample_term_id NCIT:C12710 tissue_category Digestive encode_experiment_id ENCSR049FUB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 148,793 downloaded_date 06/12/2022 release_date 09/24/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF613BCZ.bed.gz processed_file_md5 8eb4c085190b22fccc21ad51f8920625 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF613BCZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF613BCZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF613BCZ/@@download/ENCFF613BCZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF613BCZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1807af0c16242b031ef31ba40166c2e6 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens esophagus squamous epithelium tissue female adult (51 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx;Life_stage_age=adult 51 years;Reference=NR;External_resources=GEO:GSE142889;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2019-09-11,2019-02-11;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=esophagus squamous epithelium;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0006920;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE Epithelium (repl. 1, 2) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR049FUB] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • Neuronal stem cell NGENC2FHYKZFFK • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Neuronal stem cell Histone Show metadata Download track Track metadata identifier NGENC2FHYKZFFK data_source ENCODE Download track Download number_of_intervals 33,636 bp_covered 22,928,638 output_type pseudoreplicated peaks genome_build hg38 cell_type Neuronal stem cell biosample_type In vitro differentiated cells biosample_term_id CL:0000047 tissue_category Embryo encode_experiment_id ENCSR694LBI biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 843,609 downloaded_date 06/12/2022 release_date 11/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF381YDR.bed.gz processed_file_md5 0f50f9d262527b0b177298f752fc9e01 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF381YDR.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF381YDR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF381YDR/@@download/ENCFF381YDR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF381YDR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b252b0d12caa08e9774362744374c1a6 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens neuronal stem cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM818032,GEO:GSM956010;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=neuronal stem cell;ENCODE_cell_slims=stem cell,neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NSC,neuronal stem cell,neural stem cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000047;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Neuronal stem cell (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR694LBI] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • CD14+ monocyte NGENC2GEYHVE5X • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq CD14+ monocyte Histone Show metadata Download track Track metadata identifier NGENC2GEYHVE5X data_source ENCODE Download track Download number_of_intervals 68,754 bp_covered 78,878,992 output_type pseudoreplicated peaks genome_build hg38 cell_type CD14+ monocyte biosample_type Primary cell biosample_term_id CL:0001054 tissue_category Blood encode_experiment_id ENCSR000ASK biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,561,469 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF531GFL.bed.gz processed_file_md5 abe8200283973656af7322e3fcac186f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF531GFL.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF531GFL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF531GFL/@@download/ENCFF531GFL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF531GFL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 68c238bc7267685a8e6a8d02047b0dc8 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens CD14-positive monocyte female;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH003068,GEO:GSM1003564;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-08-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=CD14-positive monocyte;ENCODE_cell_slims=leukocyte,myeloid cell,monocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0001054;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE CD14+ monocyte (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ASK] [Histone ChIP-seq peaks]
H3K27me3 • HUES6 NGENC2H3WZRK6Q • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq HUES6 Histone Show metadata Download track Track metadata identifier NGENC2H3WZRK6Q data_source ENCODE Download track Download number_of_intervals 44,263 bp_covered 62,334,331 output_type replicated peaks genome_build hg38 cell_type HUES6 biosample_type Cell line biosample_term_id EFO:0007086 tissue_category Embryo encode_experiment_id ENCSR410GUN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,168,246 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF142PAF.bed.gz processed_file_md5 4ca9ad00050c01552d6e3fefc150e98c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF142PAF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF142PAF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF142PAF/@@download/ENCFF142PAF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF142PAF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 fabcb54b9ec1f0852f614c70bfb21bb9 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens HUES6;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM669897,GEO:GSM669887;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HUES6;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE HUES6 (repl. 1, 2) Histone ChIP-seq H3K27me3 replicated peaks (narrowPeak) [Experiment: ENCSR410GUN] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • Panc1 NGENC2HES633SZ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Panc1 Histone Show metadata Download track Track metadata identifier NGENC2HES633SZ data_source ENCODE Download track Download number_of_intervals 47,815 bp_covered 20,249,049 output_type replicated peaks genome_build hg38 cell_type Panc1 biosample_type Cell line biosample_term_id EFO:0002713 tissue_category Pancreas encode_experiment_id ENCSR000FCO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 944,921 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF280XHF.bed.gz processed_file_md5 669071b705988c8ef5843f838ab86482 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF280XHF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF280XHF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF280XHF/@@download/ENCFF280XHF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF280XHF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 40468c087e4308b98b7daf0a943f947d data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens Panc1;Lab=Peggy Farnham, USC;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 56 years;Reference=PMID:32728046;External_resources=GEO:GSE86666;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2014-07-07,2011-11-28;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=Panc1;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=endocrine system;ENCODE_biosample_term_synonyms=PANC-1;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002713;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Endocrine life_stage Adult track_name ENCODE Panc1 (repl. 1, 2) Histone ChIP-seq H3K27me3 replicated peaks (narrowPeak) [Experiment: ENCSR000FCO] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • Neurosphere NGENC2HIHNYUA3 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Neurosphere Histone Show metadata Download track Track metadata identifier NGENC2HIHNYUA3 data_source ENCODE Download track Download number_of_intervals 45,946 bp_covered 43,578,232 output_type pseudoreplicated peaks genome_build hg38 cell_type Neurosphere biosample_type Stem cell biosample_term_id NCIT:C172261 tissue_category Stem Cell encode_experiment_id ENCSR671WZX biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,105,081 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF640ZUC.bed.gz processed_file_md5 41010c5a293cf919758af18d78f77508 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF640ZUC.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF640ZUC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF640ZUC/@@download/ENCFF640ZUC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF640ZUC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c83294a47d0b9127467af28791245542 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens neurosphere embryo (15 weeks) originated from ganglionic eminence;Lab=Joseph Costello, UCSF;ENCODE_internal_tags=RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=embryonic 15 weeks;Reference=PMID:32728046;External_resources=GEO:GSM1127078;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=neurosphere;ENCODE_cell_slims=stem cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0000427;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Stem Cell life_stage Embryonic track_name ENCODE Neurosphere (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR671WZX] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • Middle frontal area BA46 NGENC2HOF4GUUC • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Middle frontal area BA46 Histone Show metadata Download track Track metadata identifier NGENC2HOF4GUUC data_source ENCODE Download track Download number_of_intervals 2,438 bp_covered 1,614,695 output_type pseudoreplicated peaks genome_build hg38 cell_type Middle frontal area BA46 biosample_type Tissue biosample_term_id UBERON:0006483 tissue_category Brain encode_experiment_id ENCSR036OBW biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 44,136 downloaded_date 06/12/2022 release_date 12/14/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF623OUJ.bed.gz processed_file_md5 5c524c18127bac883924f76b82287234 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF623OUJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF623OUJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF623OUJ/@@download/ENCFF623OUJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF623OUJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8a8184eb632926ce3fd30b8e05a76492 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens with mild cognitive impairment| dorsolateral prefrontal cortex tissue male adult (90 or above years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RushAD,RegulomeDB_2_2;Life_stage_age=adult 90 or above years;Reference=NR;External_resources=GEO:GSE208479;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-02-05,2021-09-21;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=dorsolateral prefrontal cortex;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0006483;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Middle frontal area BA46 (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR036OBW] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • Osteoblast NGENC2IJYSALZZ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Osteoblast Histone Show metadata Download track Track metadata identifier NGENC2IJYSALZZ data_source ENCODE Download track Download number_of_intervals 101,551 bp_covered 49,145,469 output_type pseudoreplicated peaks genome_build hg38 cell_type Osteoblast biosample_type Primary cell biosample_term_id CL:0000062 tissue_category Bone encode_experiment_id ENCSR000AQS biological_replicate 2 technical_replicate 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,969,593 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF021PZF.bed.gz processed_file_md5 71cc89d907efb99bad4d9a97b863be1d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF021PZF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF021PZF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF021PZF/@@download/ENCFF021PZF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF021PZF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 145a69955d1288c76e3dead699b4beff data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens osteoblast;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM1003466,UCSC-ENCODE-hg19:wgEncodeEH002400;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-03-06,2011-02-10;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=osteoblast;ENCODE_cell_slims=connective tissue cell;ENCODE_system_slims=skeletal system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000062;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Skeletal life_stage Unknown track_name ENCODE Osteoblast (repl. 2) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AQS] [Histone ChIP-seq peaks]
H3K27me3 • Mesenchymal stem cell NGENC2IRNYM67W • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mesenchymal stem cell Histone Show metadata Download track Track metadata identifier NGENC2IRNYM67W data_source ENCODE Download track Download number_of_intervals 75,298 bp_covered 69,705,858 output_type replicated peaks genome_build hg38 cell_type Mesenchymal stem cell biosample_type Stem cell biosample_term_id CL:0000134 tissue_category Connective Tissue encode_experiment_id ENCSR832JVP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,836,721 downloaded_date 06/12/2022 release_date 11/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF565TXB.bed.gz processed_file_md5 379d8a38239cbee7815f5270efbb4c38 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF565TXB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF565TXB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF565TXB/@@download/ENCFF565TXB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF565TXB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 db2ad9a9a60d2dd8da9ecefdefb6a0a9 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens mesenchymal stem cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM767345,GEO:GSM767344;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=mesenchymal stem cell;ENCODE_cell_slims=stem cell,connective tissue cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000134;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Skeletal life_stage Embryonic track_name ENCODE Mesenchymal stem cell (repl. 1, 2) Histone ChIP-seq H3K27me3 replicated peaks (narrowPeak) [Experiment: ENCSR832JVP] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • Bipolar neuron NGENC2JQXBRCYH • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Bipolar neuron Histone Show metadata Download track Track metadata identifier NGENC2JQXBRCYH data_source ENCODE Download track Download number_of_intervals 65,431 bp_covered 106,065,405 output_type pseudoreplicated peaks genome_build hg38 cell_type Bipolar neuron biosample_type In vitro differentiated cells biosample_term_id CL:0000103 tissue_category Brain encode_experiment_id ENCSR472SEY biological_replicate 2 technical_replicate 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,668,994 downloaded_date 07/10/2025 release_date 01/25/2023 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF660ZXK.bed.gz processed_file_md5 47679132a44feb98415a3efa604f9afe wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF660ZXK.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF660ZXK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF660ZXK/@@download/ENCFF660ZXK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF660ZXK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c6084be848f4d580462ab61101efc7fe data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 _g/mL doxycycline hyclate for 4 days;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE96183;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-05-04,2015-08-03;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=bipolar neuron;ENCODE_cell_slims=neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000103;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Bipolar neuron (repl. 2) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR472SEY] [Life stage: Adult] [Histone ChIP-seq peaks]