H3K27me3 • BLaER1 NGENCIEDOZLQWN • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENCIEDOZLQWN data_source ENCODE Download track Download number_of_intervals 48,253 bp_covered 45,066,324 output_type pseudoreplicated peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR987EKG biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,118,359 downloaded_date 05/15/2024 release_date 03/01/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF391NRL.bed.gz processed_file_md5 5cb240c0ee5f88d680efd358cf24a30c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF391NRL.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF391NRL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF391NRL/@@download/ENCFF391NRL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF391NRL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5700673d886ff9242ff28d2badfa878a data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE259000;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR987EKG] [Histone ChIP-seq peaks]
H3K27me3 • H9 NGENCIFBHTMX6L • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq H9 Histone Show metadata Download track Track metadata identifier NGENCIFBHTMX6L data_source ENCODE Download track Download number_of_intervals 233,044 bp_covered 61,598,271 output_type pseudoreplicated peaks genome_build hg38 cell_type H9 biosample_type Stem cell biosample_term_id EFO:0003045 tissue_category Embryo encode_experiment_id ENCSR725YWL biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 5,905,422 downloaded_date 05/15/2024 release_date 09/15/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF655IFJ.bed.gz processed_file_md5 9a8e2641e83b06f8f7009422485b8ce2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF655IFJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF655IFJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF655IFJ/@@download/ENCFF655IFJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF655IFJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 30eadeee37adafc35eb8f1d2aaca719c data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE258176;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-08-25,2020-09-08;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H9;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003045;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H9 (repl. 1) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR725YWL] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • Nephron NGENCIJESDHC2P • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Nephron Histone Show metadata Download track Track metadata identifier NGENCIJESDHC2P data_source ENCODE Download track Download number_of_intervals 234,421 bp_covered 161,950,200 output_type pseudoreplicated peaks genome_build hg38 cell_type Nephron biosample_type Organoid biosample_term_id UBERON:0001285 tissue_category Kidney encode_experiment_id ENCSR866NTZ biological_replicate 1, 2 technical_replicate 1_1, 1_2, 1_3, 1_4, 2_1, 2_2 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 6,556,180 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF556YIG.bed.gz processed_file_md5 9ad71db88dba7168d5eb3e1318c32890 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF556YIG.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF556YIG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF556YIG/@@download/ENCFF556YIG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF556YIG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0acf9d420d8f53378bf5adeef18eb24f data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens nephron organoid, 35 days post differentiation;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE209426;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-11-18,2020-07-06;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=nephron;ENCODE_cell_slims=NR;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001285;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Renal life_stage Embryonic track_name ENCODE Nephron (repl. 1, 2) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR866NTZ] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • Brain NGENCIJHSD2DIE • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Brain Histone Show metadata Download track Track metadata identifier NGENCIJHSD2DIE data_source ENCODE Download track Download number_of_intervals 268,753 bp_covered 70,359,980 output_type pseudoreplicated peaks genome_build hg38 cell_type Brain biosample_type Organoid biosample_term_id UBERON:0000955 tissue_category Brain encode_experiment_id ENCSR070JEZ biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 7,192,579 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF998SVH.bed.gz processed_file_md5 27b464b45d9e9a70112bad0fd66396fe wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF998SVH.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF998SVH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF998SVH/@@download/ENCFF998SVH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF998SVH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 432f308b247029fce2645c846b47d336 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens brain organoid, 180 days post differentiation;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE176908;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-14,2020-07-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=brain;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000955;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Embryonic track_name ENCODE Brain (repl. 1) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR070JEZ] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • Left ventricle NGENCIL6BAM5QC • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Left ventricle Histone Show metadata Download track Track metadata identifier NGENCIL6BAM5QC data_source ENCODE Download track Download number_of_intervals 10,825 bp_covered 7,334,094 output_type pseudoreplicated peaks genome_build hg38 cell_type Left ventricle biosample_type Tissue biosample_term_id UBERON:0002084 tissue_category Heart encode_experiment_id ENCSR655QXR biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 204,791 downloaded_date 06/12/2022 release_date 09/17/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF055ETB.bed.gz processed_file_md5 3612434dd8e45f5034239d105ad1a212 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF055ETB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF055ETB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF055ETB/@@download/ENCFF055ETB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF055ETB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c6d9e5d898255ee86e908f47fc8a149b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens heart left ventricle tissue male adult (61 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 61 years;Reference=NR;External_resources=GEO:GSE187789;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-09-21,2021-06-21;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=heart left ventricle;ENCODE_cell_slims=NR;ENCODE_system_slims=circulatory system;ENCODE_biosample_term_synonyms=cardiac left ventricle,left cardiac ventricle,left ventricle of heart,left ventricle;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002084;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Left ventricle (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR655QXR] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • Muscle layer NGENCILEBPZ7EH • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Muscle layer Histone Show metadata Download track Track metadata identifier NGENCILEBPZ7EH data_source ENCODE Download track Download number_of_intervals 54,449 bp_covered 52,629,609 output_type pseudoreplicated peaks genome_build hg38 cell_type Muscle layer biosample_type Tissue biosample_term_id UBERON:0006660 tissue_category Digestive encode_experiment_id ENCSR805OWG biological_replicate 1 technical_replicate 1_2 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,205,996 downloaded_date 06/12/2022 release_date 01/29/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF611SRJ.bed.gz processed_file_md5 4e84f5804c0f8a03a449cfdee0f93a8d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF611SRJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF611SRJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF611SRJ/@@download/ENCFF611SRJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF611SRJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f61d318a6576d5c88461d6c9bd326550 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens muscle layer of duodenum tissue male adult (73 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 73 years;Reference=PMID:32728046;External_resources=GEO:GSM916032;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=muscle layer of duodenum;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=duodenal muscularis propria,muscularis externa of duodenum;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0012488;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE Muscle layer (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR805OWG] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • Endodermal cell NGENCILHPWEQJR • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Endodermal cell Histone Show metadata Download track Track metadata identifier NGENCILHPWEQJR data_source ENCODE Download track Download number_of_intervals 232,423 bp_covered 141,869,100 output_type pseudoreplicated peaks genome_build hg38 cell_type Endodermal cell biosample_type In vitro differentiated cells biosample_term_id CL:0000223 tissue_category Embryo encode_experiment_id ENCSR758YNR biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1, 2_2 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 6,323,184 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF770KSI.bed.gz processed_file_md5 2209dfd08fa9f11a1cd0374dc4342ec8 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF770KSI.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF770KSI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF770KSI/@@download/ENCFF770KSI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF770KSI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4d7f57f892760ba44f78f72416713078 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens endodermal cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE209034;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-11-18,2020-08-04;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=endodermal cell;ENCODE_cell_slims=embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=endoderm cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000223;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Endodermal cell (repl. 1, 2) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR758YNR] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • GM23248 NGENCIM33AMUNF • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq GM23248 Histone Show metadata Download track Track metadata identifier NGENCIM33AMUNF data_source ENCODE Download track Download number_of_intervals 72,963 bp_covered 68,088,628 output_type replicated peaks genome_build hg38 cell_type GM23248 biosample_type Cell line biosample_term_id EFO:0005723 tissue_category Skin encode_experiment_id ENCSR866KFY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,542,579 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF590HYJ.bed.gz processed_file_md5 bc7fab4797cdf7d14c3e7ef038ea3f7e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF590HYJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF590HYJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF590HYJ/@@download/ENCFF590HYJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF590HYJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 31bc424f60ccf77118522d6dd390eb8a data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens GM23248;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE86761;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-05-03,2015-08-03;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=GM23248;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=GM23248 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005723;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Adult track_name ENCODE GM23248 (repl. 1, 2) Histone ChIP-seq H3K27me3 replicated peaks (narrowPeak) [Experiment: ENCSR866KFY] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • Epithelium NGENCIMDFIRGEP • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Epithelium Histone Show metadata Download track Track metadata identifier NGENCIMDFIRGEP data_source ENCODE Download track Download number_of_intervals 126 bp_covered 68,845 output_type pseudoreplicated peaks genome_build hg38 cell_type Epithelium biosample_type Tissue biosample_term_id NCIT:C12710 tissue_category Digestive encode_experiment_id ENCSR049FUB biological_replicate 2 technical_replicate 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,006 downloaded_date 06/12/2022 release_date 09/24/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF915HSM.bed.gz processed_file_md5 69496a2d64980afa471fab6f5bae9fe7 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF915HSM.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF915HSM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF915HSM/@@download/ENCFF915HSM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF915HSM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f97e78003f796660b1b63dd3f4c7c1b2 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens esophagus squamous epithelium tissue female adult (51 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx;Life_stage_age=adult 51 years;Reference=NR;External_resources=GEO:GSE142889;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2019-09-11,2019-02-11;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=esophagus squamous epithelium;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0006920;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE Epithelium (repl. 2) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR049FUB] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • K562 NGENCIOC5EZJLO • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq K562 Histone Show metadata Download track Track metadata identifier NGENCIOC5EZJLO data_source ENCODE Download track Download number_of_intervals 29,830 bp_covered 8,846,486 output_type pseudoreplicated peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000AKQ biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 568,759 downloaded_date 05/15/2024 release_date 06/16/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF787IWO.bed.gz processed_file_md5 55e28fe869c4dcb2dbe2779c1fa8e1ef wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF787IWO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF787IWO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF787IWO/@@download/ENCFF787IWO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF787IWO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 43ed3969d1aedd810153a7add354d236 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000044,GEO:GSM733658;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AKQ] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • iPS-20b NGENCIQI22KA6A • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq iPS-20b Histone Show metadata Download track Track metadata identifier NGENCIQI22KA6A data_source ENCODE Download track Download number_of_intervals 39,570 bp_covered 69,982,450 output_type pseudoreplicated peaks genome_build hg38 cell_type iPS-20b biosample_type Cell line biosample_term_id EFO:0007108 tissue_category iPSC encode_experiment_id ENCSR352UID biological_replicate 1, 2 technical_replicate 1_4, 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,039,626 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF821GAD.bed.gz processed_file_md5 d971f7f802623cf86b77d5008ae6d546 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF821GAD.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF821GAD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF821GAD/@@download/ENCFF821GAD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF821GAD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 37c1f0915fcb6b4501117cd71f0a1e92 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens iPS-20b;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 55 years;Reference=PMID:32728046;External_resources=GEO:GSM772847,GEO:GSM621416;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=iPS-20b;ENCODE_cell_slims=induced pluripotent stem cell,stem cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007108;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Stem Cell life_stage Adult track_name ENCODE iPS-20b (repl. 1, 2) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR352UID] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • Smooth muscle cell NGENCIQZV2R6EP • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Smooth muscle cell Histone Show metadata Download track Track metadata identifier NGENCIQZV2R6EP data_source ENCODE Download track Download number_of_intervals 25,667 bp_covered 32,509,795 output_type pseudoreplicated peaks genome_build hg38 cell_type Smooth muscle cell biosample_type In vitro differentiated cells biosample_term_id CL:0000192 tissue_category Muscle encode_experiment_id ENCSR143RMH biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 557,565 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF884IIB.bed.gz processed_file_md5 2716f170f5dbf9a1fa59b1e8a3dad95a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF884IIB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF884IIB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF884IIB/@@download/ENCFF884IIB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF884IIB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a284727d99061326073af1c39d92a756 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens smooth muscle cell originated from H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,SESCC,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSE95948;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-04-27;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=smooth muscle cell;ENCODE_cell_slims=smooth muscle cell;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=smooth muscle fiber,myocytes, smooth muscle,SMCs;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000192;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Muscular life_stage Embryonic track_name ENCODE Smooth muscle cell (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR143RMH] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • HepG2 NGENCIRGNNPWXV • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq HepG2 Histone Show metadata Download track Track metadata identifier NGENCIRGNNPWXV data_source ENCODE Download track Download number_of_intervals 58,624 bp_covered 16,648,592 output_type pseudoreplicated peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000DUE biological_replicate 2 technical_replicate 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,063,039 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF486AVP.bed.gz processed_file_md5 050933564f11a5d95e6bca75dd03e5a7 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF486AVP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF486AVP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF486AVP/@@download/ENCFF486AVP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF486AVP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f669075a5dd997745f8368c7b0fe5e2b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSM945231,UCSC-ENCODE-hg19:wgEncodeEH000433;Project=ENCODE;Award=U54HG004592;Experiment_date_released=2011-02-11;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=HepG2 cell,Hep-G2;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000DUE] [Life stage: Child] [Histone ChIP-seq peaks]
H3K27me3 • Naive thymus-derived CD4+ alpha-beta T cell NGENCIRTX5OLCH • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Naive thymus-derived CD4+ alpha-beta T cell Histone Show metadata Download track Track metadata identifier NGENCIRTX5OLCH data_source ENCODE Download track Download number_of_intervals 244,295 bp_covered 107,308,987 output_type pseudoreplicated peaks genome_build hg38 cell_type Naive thymus-derived CD4+ alpha-beta T cell biosample_type Primary cell biosample_term_id CL:0000895 tissue_category Blood encode_experiment_id ENCSR953RGF biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 6,206,378 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF006DSR.bed.gz processed_file_md5 58601a6ac809c72c6a2571ddd767307f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF006DSR.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF006DSR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF006DSR/@@download/ENCFF006DSR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF006DSR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 972b245a694ec265b7ba4b919838cc59 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 43 years;Reference=NR;External_resources=GEO:GSE177935;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-14,2020-08-04;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=naive thymus-derived CD4-positive, alpha-beta T cell;ENCODE_cell_slims=T cell,leukocyte,CD4+ T cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=naive thymus-derived CD4-positive, alpha-beta T lymphocyte,Th0,naive thymus-derived CD4-positive, alpha-beta T-cell,naive thymus-derived CD4-positive, alpha-beta T-lymphocyte,T.4Nve.Sp;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000895;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Naive thymus-derived CD4+ alpha-beta T cell (repl. 1) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR953RGF] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • Gastrocnemius medialis NGENCIULHM26OZ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Gastrocnemius medialis Histone Show metadata Download track Track metadata identifier NGENCIULHM26OZ data_source ENCODE Download track Download number_of_intervals 17,386 bp_covered 23,477,720 output_type pseudoreplicated peaks genome_build hg38 cell_type Gastrocnemius medialis biosample_type Tissue biosample_term_id UBERON:0011907 tissue_category Skeletal Muscle encode_experiment_id ENCSR453MSI biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 389,438 downloaded_date 06/12/2022 release_date 09/22/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF077AZD.bed.gz processed_file_md5 0366a981bf5b43f84d575a1c1a1593da wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF077AZD.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF077AZD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF077AZD/@@download/ENCFF077AZD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF077AZD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f1b855254cbfdb5b180582682784e020 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens gastrocnemius medialis tissue female adult (51 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx;Life_stage_age=adult 51 years;Reference=NR;External_resources=GEO:GSE142979;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2019-09-11,2019-09-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=gastrocnemius medialis;ENCODE_cell_slims=NR;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=medial head of gastrocnemius muscle,medial head of gastrocnemius,caput mediale (musculus gastrocnemius),caput mediale musculus gastrocnemii;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0011907;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Muscular life_stage Adult track_name ENCODE Gastrocnemius medialis (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR453MSI] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • Endodermal cell NGENCIV2NBNFS7 • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Endodermal cell Histone Show metadata Download track Track metadata identifier NGENCIV2NBNFS7 data_source ENCODE Download track Download number_of_intervals 173,500 bp_covered 102,255,507 output_type pseudoreplicated peaks genome_build hg38 cell_type Endodermal cell biosample_type In vitro differentiated cells biosample_term_id CL:0000223 tissue_category Embryo encode_experiment_id ENCSR832CNQ biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 4,606,982 downloaded_date 06/12/2022 release_date 06/19/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF240DZY.bed.gz processed_file_md5 ceb13d3ace9f50822cdbf5d27708674f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF240DZY.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF240DZY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF240DZY/@@download/ENCFF240DZY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF240DZY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 32d8d54b9fb775ed688fee55833581a5 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens endodermal cell originated from H1;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE188061;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-06-24;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=endodermal cell;ENCODE_cell_slims=embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=endoderm cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000223;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Endodermal cell (repl. 1) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR832CNQ] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • Middle frontal area BA46 NGENCJ2W5CZ2VA • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Middle frontal area BA46 Histone Show metadata Download track Track metadata identifier NGENCJ2W5CZ2VA data_source ENCODE Download track Download number_of_intervals 69,647 bp_covered 73,522,583 output_type pseudoreplicated peaks genome_build hg38 cell_type Middle frontal area BA46 biosample_type Tissue biosample_term_id UBERON:0006483 tissue_category Brain encode_experiment_id ENCSR881FDY biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,437,515 downloaded_date 06/12/2022 release_date 09/17/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF545EXO.bed.gz processed_file_md5 345c772880b8f360cebba638b2d0ce7b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF545EXO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF545EXO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF545EXO/@@download/ENCFF545EXO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF545EXO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d5f752e1c28254a247776862d777d2cb data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens with Cognitive impairment| dorsolateral prefrontal cortex tissue female adult (90 or above years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RushAD,RegulomeDB_2_2;Life_stage_age=adult 90 or above years;Reference=NR;External_resources=GEO:GSE187873;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-09-21;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=dorsolateral prefrontal cortex;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0006483;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Middle frontal area BA46 (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR881FDY] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • CD8+ alpha-beta naive T cell NGENCJ4QSN5PPN • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq CD8+ alpha-beta naive T cell Histone Show metadata Download track Track metadata identifier NGENCJ4QSN5PPN data_source ENCODE Download track Download number_of_intervals 217,829 bp_covered 139,386,651 output_type pseudoreplicated peaks genome_build hg38 cell_type CD8+ alpha-beta naive T cell biosample_type Primary cell biosample_term_id CL:0000900 tissue_category Blood encode_experiment_id ENCSR630FZF biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 5,787,829 downloaded_date 06/12/2022 release_date 06/18/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF805OJP.bed.gz processed_file_md5 4a0e6b58714a28d5e02944a2507a336c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF805OJP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF805OJP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF805OJP/@@download/ENCFF805OJP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF805OJP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5cefee39d2f15e067ce05ea5061c4bb2 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens stimulated activated naive CD8-positive, alpha-beta T cell male adult (42 years) treated with 100 ng/mL Interleukin-15 for 24 hours, anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 42 years;Reference=NR;External_resources=GEO:GSE187686;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-06-24;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=stimulated activated naive CD8-positive, alpha-beta T cell;ENCODE_cell_slims=T cell,CD8+ T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0000667;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE CD8+ alpha-beta naive T cell (repl. 1) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR630FZF] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • Endothelial cell NGENCJ4YXLKFZQ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Endothelial cell Histone Show metadata Download track Track metadata identifier NGENCJ4YXLKFZQ data_source ENCODE Download track Download number_of_intervals 63,108 bp_covered 23,209,168 output_type pseudoreplicated peaks genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Umbilical Cord encode_experiment_id ENCSR000DVO biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,287,063 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF750LWL.bed.gz processed_file_md5 700513eb8e882c3bc209ecae8c7a1b69 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF750LWL.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF750LWL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF750LWL/@@download/ENCFF750LWL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF750LWL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 401b717a67f6fffabf4f2d787380768b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens endothelial cell of umbilical vein newborn;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM945180,UCSC-ENCODE-hg19:wgEncodeEH000411;Project=ENCODE;Award=U54HG004592;Experiment_date_released=2011-02-11,2011-03-17;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=endothelial cell of umbilical vein;ENCODE_cell_slims=endothelial cell,epithelial cell;ENCODE_system_slims=reproductive system,circulatory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002618;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Newborn track_name ENCODE Endothelial cell (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000DVO] [Life stage: Newborn] [Histone ChIP-seq peaks]
H3K27me3 • Keratinocyte NGENCJ53NE65E6 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Keratinocyte Histone Show metadata Download track Track metadata identifier NGENCJ53NE65E6 data_source ENCODE Download track Download number_of_intervals 97,979 bp_covered 90,896,223 output_type replicated peaks genome_build hg38 cell_type Keratinocyte biosample_type Primary cell biosample_term_id CL:0000312 tissue_category Skin encode_experiment_id ENCSR621FNM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,208,114 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF862FET.bed.gz processed_file_md5 7930369d791f217deebfc97714794145 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF862FET.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF862FET.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF862FET/@@download/ENCFF862FET.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF862FET.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 80ea3c3af2049218ea42d153b10a6033 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens foreskin keratinocyte male newborn (2-4 days);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=newborn 2-4 days;Reference=NR;External_resources=GEO:GSE174975;Project=GGR;Award=U01HG007919;Experiment_date_released=2017-10-10;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=foreskin keratinocyte;ENCODE_cell_slims=keratinocyte,epithelial cell;ENCODE_system_slims=reproductive system,integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:1001606;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Newborn track_name ENCODE Keratinocyte (repl. 1, 2) Histone ChIP-seq H3K27me3 replicated peaks (narrowPeak) [Experiment: ENCSR621FNM] [Life stage: Newborn] [Histone ChIP-seq peaks]