H3K27me3 • IMR-90 NGENCQCJYWQ6RK • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq IMR-90 Histone Show metadata Download track Track metadata identifier NGENCQCJYWQ6RK data_source ENCODE Download track Download number_of_intervals 176,008 bp_covered 71,487,177 output_type pseudoreplicated peaks genome_build hg38 cell_type IMR-90 biosample_type Cell line biosample_term_id EFO:0001196 tissue_category Lung encode_experiment_id ENCSR431UUY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,784,535 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF801FIP.bed.gz processed_file_md5 6cb1ad07faf23ab0c03113d93c95c82e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF801FIP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF801FIP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF801FIP/@@download/ENCFF801FIP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF801FIP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e0c5aed10d2468276209698e670976b1 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens IMR-90;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=GEO:GSM469968,GEO:GSM521889;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=IMR90;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001196;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Embryonic track_name ENCODE IMR-90 (repl. 1, 2) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR431UUY] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • Transverse colon NGENCQDBI3J7JJ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Transverse colon Histone Show metadata Download track Track metadata identifier NGENCQDBI3J7JJ data_source ENCODE Download track Download number_of_intervals 67,742 bp_covered 98,721,313 output_type pseudoreplicated peaks genome_build hg38 cell_type Transverse colon biosample_type Tissue biosample_term_id UBERON:0001157 tissue_category Digestive encode_experiment_id ENCSR643KID biological_replicate 2 technical_replicate 2_1, 2_2 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,573,918 downloaded_date 06/12/2022 release_date 09/22/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF882NDP.bed.gz processed_file_md5 e0d09b6599f7eeadb3dc76bb2bcd5dfb wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF882NDP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF882NDP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF882NDP/@@download/ENCFF882NDP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF882NDP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 57481cf7f41ec39481dc4338e7ecee41 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens transverse colon tissue male adult (37 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx;Life_stage_age=adult 37 years;Reference=NR;External_resources=GEO:GSE143044;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2017-08-28;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=transverse colon;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=colon transversum;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001157;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE Transverse colon (repl. 2) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR643KID] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • GM23338 NGENCQEAI4TIXP • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq GM23338 Histone Show metadata Download track Track metadata identifier NGENCQEAI4TIXP data_source ENCODE Download track Download number_of_intervals 304,808 bp_covered 110,506,894 output_type pseudoreplicated peaks genome_build hg38 cell_type GM23338 biosample_type Cell line biosample_term_id EFO:0007950 tissue_category iPSC encode_experiment_id ENCSR695NNR biological_replicate 1, 2, 3 technical_replicate 1_1, 1_2, 2_1, 2_2, 3_1, 3_2 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 8,167,163 downloaded_date 05/15/2024 release_date 09/15/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF238KLL.bed.gz processed_file_md5 d1cff4e6eab09bedfc3a72d24a423ba2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF238KLL.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF238KLL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF238KLL/@@download/ENCFF238KLL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF238KLL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 430fdc7bb26127261ff02988347e86a5 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens GM23338;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE257811;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-07-18,2020-07-06;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=GM23338;ENCODE_cell_slims=induced pluripotent stem cell,stem cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007950;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Stem Cell life_stage Adult track_name ENCODE GM23338 (repl. 1, 2, 3) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR695NNR] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • Epithelium NGENCQECWG6XRQ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Epithelium Histone Show metadata Download track Track metadata identifier NGENCQECWG6XRQ data_source ENCODE Download track Download number_of_intervals 182 bp_covered 111,177 output_type pseudoreplicated peaks genome_build hg38 cell_type Epithelium biosample_type Tissue biosample_term_id NCIT:C12710 tissue_category Breast encode_experiment_id ENCSR770WSE biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,874 downloaded_date 06/12/2022 release_date 11/02/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF097FGO.bed.gz processed_file_md5 194bdfde785d791c0497b5a92a5f4a94 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF097FGO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF097FGO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF097FGO/@@download/ENCFF097FGO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF097FGO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c6b3ee6bf336eacb5b1dfc3aace85374 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens breast epithelium tissue female adult (53 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2,ENTEx;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE101272;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-01-27,2016-11-03;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=breast epithelium;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0008367;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Adult track_name ENCODE Epithelium (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR770WSE] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • HFFc6 NGENCQELZMEZQH • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq HFFc6 Histone Show metadata Download track Track metadata identifier NGENCQELZMEZQH data_source ENCODE Download track Download number_of_intervals 250,427 bp_covered 73,663,630 output_type pseudoreplicated peaks genome_build hg38 cell_type HFFc6 biosample_type Cell line biosample_term_id EFO:0009318 tissue_category Male Reproductive encode_experiment_id ENCSR129TUY biological_replicate 2 technical_replicate 2_1, 2_2 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 6,518,686 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF222RHB.bed.gz processed_file_md5 0a66acf0090349a538ef6f0e5d9d0ffe wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF222RHB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF222RHB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF222RHB/@@download/ENCFF222RHB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF222RHB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e2997c7aa791803a8ce0bdcd420b1c68 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens HFFc6;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=newborn 0 years;Reference=NR;External_resources=GEO:GSE208928;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-11-18,2020-07-06;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HFFc6;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=HFF-hTERT clone 6;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009318;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Newborn track_name ENCODE HFFc6 (repl. 2) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR129TUY] [Life stage: Newborn] [Histone ChIP-seq peaks]
H3K27me3 • Nephron NGENCQFQMBSJZS • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Nephron Histone Show metadata Download track Track metadata identifier NGENCQFQMBSJZS data_source ENCODE Download track Download number_of_intervals 317,403 bp_covered 168,069,177 output_type pseudoreplicated peaks genome_build hg38 cell_type Nephron biosample_type Organoid biosample_term_id UBERON:0001285 tissue_category Kidney encode_experiment_id ENCSR103RLW biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 8,702,595 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF348JUH.bed.gz processed_file_md5 46c874669ceff18a5b9a7fe7ad5350d5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF348JUH.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF348JUH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF348JUH/@@download/ENCFF348JUH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF348JUH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 07184ee181f588b1d970d4b059042687 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens nephron organoid, 21 days post differentiation originated from H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE208826;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-11-18,2020-07-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=nephron;ENCODE_cell_slims=NR;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001285;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Renal life_stage Embryonic track_name ENCODE Nephron (repl. 1) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR103RLW] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • CD8+ alpha-beta naive T cell NGENCQGARJQUE2 • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq CD8+ alpha-beta naive T cell Histone Show metadata Download track Track metadata identifier NGENCQGARJQUE2 data_source ENCODE Download track Download number_of_intervals 182,930 bp_covered 119,266,882 output_type pseudoreplicated peaks genome_build hg38 cell_type CD8+ alpha-beta naive T cell biosample_type Primary cell biosample_term_id CL:0000900 tissue_category Blood encode_experiment_id ENCSR625QYU biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 4,898,453 downloaded_date 06/12/2022 release_date 03/13/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF076RPO.bed.gz processed_file_md5 0574c38b4aeec02c4a77ece5b164e75a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF076RPO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF076RPO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF076RPO/@@download/ENCFF076RPO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF076RPO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b440cf67c32d215af9b962a0a7496381 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens stimulated activated naive CD8-positive, alpha-beta T cell male adult (36 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 36 years;Reference=NR;External_resources=GEO:GSE209284;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-03-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=stimulated activated naive CD8-positive, alpha-beta T cell;ENCODE_cell_slims=T cell,CD8+ T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0000667;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE CD8+ alpha-beta naive T cell (repl. 1) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR625QYU] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • Large intestine NGENCQGONOGT6Y • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Large intestine Histone Show metadata Download track Track metadata identifier NGENCQGONOGT6Y data_source ENCODE Download track Download number_of_intervals 68,839 bp_covered 45,977,765 output_type replicated peaks genome_build hg38 cell_type Large intestine biosample_type Tissue biosample_term_id UBERON:0000059 tissue_category Digestive encode_experiment_id ENCSR157FDN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,441,000 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF521OKI.bed.gz processed_file_md5 6b7b193d48d8cd7e9dcb5f710fe01eb9 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF521OKI.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF521OKI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF521OKI/@@download/ENCFF521OKI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF521OKI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6298c5a64f121a02bdab1f2b1269097a data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens large intestine tissue male embryo (108 days);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=embryonic 108 days;Reference=PMID:32728046;External_resources=GEO:GSM1058768,GEO:GSM1125768;Project=Roadmap;Award=U01ES017156;Experiment_date_released=2013-07-31;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=large intestine;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000059;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Embryonic track_name ENCODE Large intestine (repl. 1, 2) Histone ChIP-seq H3K27me3 replicated peaks (narrowPeak) [Experiment: ENCSR157FDN] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • HL-60 NGENCQHM6AHEZN • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq HL-60 Histone Show metadata Download track Track metadata identifier NGENCQHM6AHEZN data_source ENCODE Download track Download number_of_intervals 43,594 bp_covered 24,774,957 output_type pseudoreplicated peaks genome_build hg38 cell_type HL-60 biosample_type Cell line biosample_term_id EFO:0002793 tissue_category Blood encode_experiment_id ENCSR198IHT biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 921,881 downloaded_date 06/12/2022 release_date 08/25/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF598BHR.bed.gz processed_file_md5 2c46fea9b4c7250fac0c394cf0ce246d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF598BHR.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF598BHR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF598BHR/@@download/ENCFF598BHR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF598BHR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d603678b0eaa0824e858f1705043555c data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens HL-60;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 36 years;Reference=NR;External_resources=GEO:GSE175082;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-04-06,2020-08-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HL-60;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=HL-60 cell,HL60 cell,HL60;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002793;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE HL-60 (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR198IHT] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • Epithelial cell NGENCQHXBIIR6V • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Epithelial cell Histone Show metadata Download track Track metadata identifier NGENCQHXBIIR6V data_source ENCODE Download track Download number_of_intervals 54,207 bp_covered 36,604,673 output_type pseudoreplicated peaks genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Kidney encode_experiment_id ENCSR000DVF biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,173,723 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF121HYX.bed.gz processed_file_md5 f6aad7c626c0bf235825466a8f4c739e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF121HYX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF121HYX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF121HYX/@@download/ENCFF121HYX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF121HYX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a0575684d82394b9c93c89d8e0f015ae data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens kidney epithelial cell;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000429,GEO:GSM945160;Project=ENCODE;Award=U54HG004592;Experiment_date_released=2011-02-11,2011-03-17;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=kidney epithelial cell;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002518;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Renal life_stage Unknown track_name ENCODE Epithelial cell (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000DVF] [Histone ChIP-seq peaks]
H3K27me3 • IMR-90 NGENCQIWWUWSOP • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq IMR-90 Histone Show metadata Download track Track metadata identifier NGENCQIWWUWSOP data_source ENCODE Download track Download number_of_intervals 114,598 bp_covered 55,878,944 output_type replicated peaks genome_build hg38 cell_type IMR-90 biosample_type Cell line biosample_term_id EFO:0001196 tissue_category Lung encode_experiment_id ENCSR431UUY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,533,568 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF715CQE.bed.gz processed_file_md5 fd982e39656514874a5623f8310dff50 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF715CQE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF715CQE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF715CQE/@@download/ENCFF715CQE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF715CQE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 378214724b2cff7e32472418737e9fcc data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens IMR-90;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=GEO:GSM469968,GEO:GSM521889;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=IMR90;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001196;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Embryonic track_name ENCODE IMR-90 (repl. 1, 2) Histone ChIP-seq H3K27me3 replicated peaks (narrowPeak) [Experiment: ENCSR431UUY] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • Aorta NGENCQJQCY2RH4 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Aorta Histone Show metadata Download track Track metadata identifier NGENCQJQCY2RH4 data_source ENCODE Download track Download number_of_intervals 2,564 bp_covered 2,437,937 output_type pseudoreplicated peaks genome_build hg38 cell_type Aorta biosample_type Tissue biosample_term_id UBERON:0000947 tissue_category Blood Vessel encode_experiment_id ENCSR939RLS biological_replicate 2 technical_replicate 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 54,520 downloaded_date 06/12/2022 release_date 11/02/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF468RQH.bed.gz processed_file_md5 ce9b9ad28eb6c29f347b6661efe611a5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF468RQH.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF468RQH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF468RQH/@@download/ENCFF468RQH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF468RQH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 246f627c362c6c352bad31573bc1be69 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens thoracic aorta tissue male adult (37 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2,ENTEx;Life_stage_age=adult 37 years;Reference=PMID:32728046;External_resources=GEO:GSE96479;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-30,2016-08-10;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=thoracic aorta;ENCODE_cell_slims=NR;ENCODE_system_slims=circulatory system;ENCODE_biosample_term_synonyms=thoracic part of aorta,aorta thoracica;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001515;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Aorta (repl. 2) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR939RLS] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • Cardiovascular progenitor cell NGENCQJTWJLCSR • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Cardiovascular progenitor cell Histone Show metadata Download track Track metadata identifier NGENCQJTWJLCSR data_source ENCODE Download track Download number_of_intervals 53,941 bp_covered 34,077,065 output_type pseudoreplicated peaks genome_build hg38 cell_type Cardiovascular progenitor cell biosample_type In vitro differentiated cells biosample_term_id CL:0002664 tissue_category Heart encode_experiment_id ENCSR000DSK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,177,821 downloaded_date 07/10/2025 release_date 11/01/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF974NIE.bed.gz processed_file_md5 def9510458d1e8e6d6cfe6e88e41802e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF974NIE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF974NIE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF974NIE/@@download/ENCFF974NIE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF974NIE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a00e95c95c8bc42adac99e943706b759 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens cardiovascular progenitor cell originated from H7 treated with 5 ng/mL Fibroblast growth factor 2 for 5 days, 10 ng/mL Bone morphogenetic protein 4 for 5 days, 6 ng/mL Activin A for 5 days;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:22981225;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002535,GEO:GSM945326;Project=ENCODE;Award=U54HG004592;Experiment_date_released=2012-02-16;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=cardiovascular progenitor cell;ENCODE_cell_slims=stem cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=cardiovascular progenitor cell,CPC;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002664;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Embryonic track_name ENCODE Cardiovascular progenitor cell (repl. 1, 2) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000DSK] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • CD8+ alpha-beta memory cell NGENCQK5HEUP54 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq CD8+ alpha-beta memory cell Histone Show metadata Download track Track metadata identifier NGENCQK5HEUP54 data_source ENCODE Download track Download number_of_intervals 15,116 bp_covered 11,491,039 output_type replicated peaks genome_build hg38 cell_type CD8+ alpha-beta memory cell biosample_type Primary cell biosample_term_id CL:0000909 tissue_category Blood encode_experiment_id ENCSR517SMA biological_replicate 1, 2 technical_replicate 1_3, 2_3 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 311,938 downloaded_date 06/12/2022 release_date 01/29/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF610JUO.bed.gz processed_file_md5 9337b5e343ec0267cf84c17026666ce1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF610JUO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF610JUO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF610JUO/@@download/ENCFF610JUO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF610JUO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 170a7bb28b6b5575edc0dfdbb70261fe data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens CD8-positive, alpha-beta memory T cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM772956,GEO:GSM772878;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=false;ENCODE_biosample_term_name=CD8-positive, alpha-beta memory T cell;ENCODE_cell_slims=T cell,CD8+ T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=CD8-positive, alpha-beta memory T-lymphocyte,CD8-positive, alpha-beta memory T-cell,CD8-positive, alpha-beta memory T lymphocyte;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000909;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE CD8+ alpha-beta memory cell (repl. 1, 2) Histone ChIP-seq H3K27me3 replicated peaks (narrowPeak) [Experiment: ENCSR517SMA] [Histone ChIP-seq peaks]
H3K27me3 • Endothelial cell NGENCQKVWUGB3Y • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Endothelial cell Histone Show metadata Download track Track metadata identifier NGENCQKVWUGB3Y data_source ENCODE Download track Download number_of_intervals 54,833 bp_covered 36,001,554 output_type replicated peaks genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Umbilical Cord encode_experiment_id ENCSR000AKK biological_replicate 1, 2 technical_replicate 1_1, 2_2 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,164,748 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF267YSC.bed.gz processed_file_md5 a88b29ea36edb2d0ce7ac64353bf8b91 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF267YSC.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF267YSC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF267YSC/@@download/ENCFF267YSC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF267YSC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f7ecf5995e4ded6f29c12b8458db93b9 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens endothelial cell of umbilical vein newborn;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000038,GEO:GSM733688;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=endothelial cell of umbilical vein;ENCODE_cell_slims=endothelial cell,epithelial cell;ENCODE_system_slims=reproductive system,circulatory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002618;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Newborn track_name ENCODE Endothelial cell (repl. 1, 2) Histone ChIP-seq H3K27me3 replicated peaks (narrowPeak) [Experiment: ENCSR000AKK] [Life stage: Newborn] [Histone ChIP-seq peaks]
H3K27me3 • T-cell NGENCQLAZUKJP3 • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq T-cell Histone Show metadata Download track Track metadata identifier NGENCQLAZUKJP3 data_source ENCODE Download track Download number_of_intervals 251,813 bp_covered 147,009,219 output_type pseudoreplicated peaks genome_build hg38 cell_type T-cell biosample_type Primary cell biosample_term_id CL:0000084 tissue_category Immune encode_experiment_id ENCSR374DFV biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 6,793,252 downloaded_date 06/12/2022 release_date 03/30/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF817KRL.bed.gz processed_file_md5 18a36a68b949fe535a7e8028a264c248 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF817KRL.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF817KRL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF817KRL/@@download/ENCFF817KRL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF817KRL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6d3bc7b0eedba423c3a489d2375e6a83 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens T-cell female adult (21 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 21 years;Reference=NR;External_resources=GEO:GSE209028;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-04-27,2022-04-26;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=T-cell;ENCODE_cell_slims=T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=T-lymphocyte,T-cell,T lymphocyte;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000084;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE T-cell (repl. 1) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR374DFV] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • iPS DF 19.11 NGENCQPAV72E5V • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq iPS DF 19.11 Histone Show metadata Download track Track metadata identifier NGENCQPAV72E5V data_source ENCODE Download track Download number_of_intervals 13,267 bp_covered 13,274,645 output_type pseudoreplicated peaks genome_build hg38 cell_type iPS DF 19.11 biosample_type Cell line biosample_term_id EFO:0007096 tissue_category iPSC encode_experiment_id ENCSR100PNV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 305,135 downloaded_date 06/12/2022 release_date 11/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF036XJO.bed.gz processed_file_md5 9245ad33d99823940c581c1d9a50b876 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF036XJO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF036XJO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF036XJO/@@download/ENCFF036XJO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF036XJO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 fe2877ca6f16af1fa8773ce1bce82932 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens iPS DF 19.11;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM752970,GEO:GSM706067;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=iPS DF 19.11;ENCODE_cell_slims=induced pluripotent stem cell,stem cell;ENCODE_system_slims=reproductive system,integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007096;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Stem Cell life_stage Newborn track_name ENCODE iPS DF 19.11 (repl. 1, 2) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR100PNV] [Life stage: Newborn] [Histone ChIP-seq peaks]
H3K27me3 • PC-9 NGENCQRKHONBRO • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq PC-9 Histone Show metadata Download track Track metadata identifier NGENCQRKHONBRO data_source ENCODE Download track Download number_of_intervals 71,028 bp_covered 57,685,091 output_type pseudoreplicated peaks genome_build hg38 cell_type PC-9 biosample_type Cell line biosample_term_id EFO:0002847 tissue_category Lung encode_experiment_id ENCSR726LZG biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,473,799 downloaded_date 06/12/2022 release_date 12/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF170WQG.bed.gz processed_file_md5 351c522cc1e8512a770cf28880fbe6b2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF170WQG.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF170WQG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF170WQG/@@download/ENCFF170WQG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF170WQG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5a4adde8aa659e2a39496c0090a5723e data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens PC-9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSE96341;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-05-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=PC-9;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002847;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Unknown track_name ENCODE PC-9 (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR726LZG] [Histone ChIP-seq peaks]
H3K27me3 • Epithelial cell NGENCQSWAGDFUQ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Epithelial cell Histone Show metadata Download track Track metadata identifier NGENCQSWAGDFUQ data_source ENCODE Download track Download number_of_intervals 33,289 bp_covered 12,280,640 output_type replicated peaks genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Lung encode_experiment_id ENCSR000DXK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 642,026 downloaded_date 06/12/2022 release_date 08/14/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF325VJP.bed.gz processed_file_md5 3d856a412b05744a49ebad178618f4ca wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF325VJP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF325VJP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF325VJP/@@download/ENCFF325VJP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF325VJP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 19bf9b57a2d3aeeb2461c04668a20c9e data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens bronchial epithelial cell;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000420,GEO:GSM945200;Project=ENCODE;Award=U54HG004592;Experiment_date_released=2011-02-11;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=bronchial epithelial cell;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002328;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Unknown track_name ENCODE Epithelial cell (repl. 1, 2) Histone ChIP-seq H3K27me3 replicated peaks (narrowPeak) [Experiment: ENCSR000DXK] [Histone ChIP-seq peaks]
H3K27me3 • Caco-2 NGENCQSYSPJSIF • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Caco-2 Histone Show metadata Download track Track metadata identifier NGENCQSYSPJSIF data_source ENCODE Download track Download number_of_intervals 6,291 bp_covered 1,395,524 output_type pseudoreplicated peaks genome_build hg38 cell_type Caco-2 biosample_type Cell line biosample_term_id EFO:0001099 tissue_category Digestive encode_experiment_id ENCSR000DQL biological_replicate 2 technical_replicate 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 117,359 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF957FYR.bed.gz processed_file_md5 8ea0dcd6ebd74422abeba9e30347a309 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF957FYR.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF957FYR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF957FYR/@@download/ENCFF957FYR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF957FYR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f0f0cc2a0a3d394f2a53ab5da4afb4a2 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens Caco-2;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 72 years;Reference=PMID:32728046;External_resources=GEO:GSM945203,UCSC-ENCODE-hg19:wgEncodeEH000425;Project=ENCODE;Award=U54HG004592;Experiment_date_released=2011-02-11;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=Caco-2;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=Caco2;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001099;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE Caco-2 (repl. 2) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000DQL] [Life stage: Adult] [Histone ChIP-seq peaks]