ME-1 NGADBJ36N7FYWF • ATACdb v1.03 ATAC-seq ME-1 Accessible chromatin Show metadata identifier NGADBJ36N7FYWF data_source ATACdb_v1.03 Download track Download number_of_intervals 34,823 bp_covered 11,063,132 output_type accessible chromatin region genome_build hg38 cell_type ME-1 biosample_type Cell line biosample_term_id EFO:0006645 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,124,521 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0615_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 f7157219efd1e9cf5a4770fd09818667 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0615_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0615_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0615.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0615.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 6d5392a616290c41a3822c26b6c26c5a data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0615;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=ME-1;Cancer_Type=Leukemia;Region_Number=34854;Length=11073.696 kb;GEO_SRA=SRR5861513;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 ME-1 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
T cell NGADBJ3JMWVJKI • ATACdb v1.03 ATAC-seq T cell TFBS Show metadata identifier NGADBJ3JMWVJKI data_source ATACdb_v1.03 Download track Download number_of_intervals 80,126 bp_covered 1,053,539 output_type transcription factor binding sites genome_build hg38 cell_type T cell biosample_type Primary cell biosample_term_id CL:0000084 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 2,378,799 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0707_hg38_motif_binding_sites.bed.gz processed_file_md5 aeb1a9396774d59b0b210a4a401cdb9c wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0707_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0707_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0707;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=Cultured T cell;Cancer_Type=Normal;Region_Number=12886;Length=5642.908 kb;GEO_SRA=SRR6372867;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwangl system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 T cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
TOV-21G NGADBJ3TZUKQXM • ATACdb v1.03 ATAC-seq TOV-21G TFBS Show metadata identifier NGADBJ3TZUKQXM data_source ATACdb_v1.03 Download track Download number_of_intervals 92,958 bp_covered 1,242,206 output_type transcription factor binding sites genome_build hg38 cell_type TOV-21G biosample_type Cell line biosample_term_id Not available tissue_category Female Reproductive encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 3,057,563 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0871_hg38_motif_binding_sites.bed.gz processed_file_md5 e165a2b349f983386462f246df380018 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0871_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0871_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0871;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=TOV-21G;Cancer_Type=Ovarion cancer;Region_Number=24970;Length=10185.53 kb;GEO_SRA=SRR5876661;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab. system_category Reproductive life_stage Unknown track_name ATACdb_v1.03 TOV-21G ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
CEM/C1 NGADBJ43XEKJ43 • ATACdb v1.03 ATAC-seq CEM/C1 Accessible chromatin Show metadata identifier NGADBJ43XEKJ43 data_source ATACdb_v1.03 Download track Download number_of_intervals 2,510 bp_covered 1,029,674 output_type accessible chromatin region genome_build hg38 cell_type CEM/C1 biosample_type Cell line biosample_term_id EFO:0001667 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 75,840 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1097_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 0f0d68974709c5c91f2aebca8687b88d wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1097_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1097_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1097.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1097.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 a900714335bc9a65770430385b937765 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1097;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=CEM;Cancer_Type=Leukemia;Region_Number=2538;Length=1021.354 kb;GEO_SRA=SRR5123142;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FI system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 CEM/C1 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
GM12878 and HEK293T NGADBJ55JQXZPI • ATACdb v1.03 ATAC-seq GM12878 and HEK293T Accessible chromatin Show metadata identifier NGADBJ55JQXZPI data_source ATACdb_v1.03 Download track Download number_of_intervals 10,984 bp_covered 4,873,549 output_type accessible chromatin region genome_build hg38 cell_type GM12878 and HEK293T biosample_type Cell line biosample_term_id Not available tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 340,489 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1301_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 4efd1369c6ed5e27856edf898c568fdd wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1301_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1301_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1301.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1301.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 3d41507d9669715466378f3648a013d4 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1301;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=Mixture of GM12878 and HEK293T;Cancer_Type=Normal;Region_Number=11007;Length=4887.734 kb;GEO_SRA=SRR1947692;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://t system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 GM12878 and HEK293T ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
K562 NGADBJ57E753GT • ATACdb v1.03 ATAC-seq K562 Accessible chromatin Show metadata identifier NGADBJ57E753GT data_source ATACdb_v1.03 Download track Download number_of_intervals 8,638 bp_covered 3,646,251 output_type accessible chromatin region genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 282,967 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1031_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 300bae17ef52cd2127e0652de6ad664b wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1031_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1031_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1031.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1031.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 34aecee96fcfc7dfb1a9a65531fbaecc data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1031;Biosample_Type=Cell Line;Tissue_Type=Bone marrow;Biosample_Name=K-562;Cancer_Type=Erythroleukemic;Region_Number=8667;Length=3667.214 kb;GEO_SRA=SRR5128068;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwang system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 K562 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
HAEC NGADBJ5V4IURLV • ATACdb v1.03 ATAC-seq HAEC TFBS Show metadata identifier NGADBJ5V4IURLV data_source ATACdb_v1.03 Download track Download number_of_intervals 153,115 bp_covered 2,053,766 output_type transcription factor binding sites genome_build hg38 cell_type HAEC biosample_type Not applicable biosample_term_id EFO:0022506 tissue_category Blood Vessel encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 5,075,276 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0104_hg38_motif_binding_sites.bed.gz processed_file_md5 91d029f9841cd05588992c071bed5152 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0104_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0104_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0104;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=HAEC;Cancer_Type=Coronary artery disease;Region_Number=39789;Length=16651.508 kb;GEO_SRA=SRR6898225;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwangl system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 HAEC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
T-helper 17 cell NGADBJ6GIW6CKX • ATACdb v1.03 ATAC-seq T-helper 17 cell TFBS Show metadata identifier NGADBJ6GIW6CKX data_source ATACdb_v1.03 Download track Download number_of_intervals 104,762 bp_covered 1,401,866 output_type transcription factor binding sites genome_build hg38 cell_type T-helper 17 cell biosample_type Not applicable biosample_term_id CL:0000899 tissue_category Immune encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 3,288,646 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0273_hg38_motif_binding_sites.bed.gz processed_file_md5 de9312c473b17a2df1bea4a4fbc67dbb wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0273_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0273_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0273;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Th17;Cancer_Type=Normal;Region_Number=21152;Length=10544.422 kb;GEO_SRA=SRR7650804;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER system_category Lymphatic life_stage Unknown track_name ATACdb_v1.03 T-helper 17 cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Peripheral mononucleated cell NGADBJ6RWNSXCV • ATACdb v1.03 ATAC-seq Peripheral mononucleated cell Accessible chromatin Show metadata identifier NGADBJ6RWNSXCV data_source ATACdb_v1.03 Download track Download number_of_intervals 28,067 bp_covered 18,056,915 output_type accessible chromatin region genome_build hg38 cell_type Peripheral mononucleated cell biosample_type Cell line biosample_term_id CL:2000001 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 963,627 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1432_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 d41e70c7111a9ec5dd852055432871ce wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1432_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1432_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1432.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1432.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 566ef67732a65e59715e079d20429319 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1432;Biosample_Type=Cell Line;Tissue_Type=Peripheral blood;Biosample_Name=JHU-06;Cancer_Type=Leukemia;Region_Number=28112;Length=18085.873 kb;GEO_SRA=SRR5785392;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwan system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Peripheral mononucleated cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
iMeLCs NGADBJ6VIHK27W • ATACdb v1.03 ATAC-seq iMeLCs TFBS Show metadata identifier NGADBJ6VIHK27W data_source ATACdb_v1.03 Download track Download number_of_intervals 284,418 bp_covered 3,820,125 output_type transcription factor binding sites genome_build hg38 cell_type iMeLCs biosample_type Stem cell biosample_term_id Not available tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 9,112,912 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0008_hg38_motif_binding_sites.bed.gz processed_file_md5 18e20f922bf5f5fd7142e3392d8bac91 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0008_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0008_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0008;Biosample_Type=Stem Cell;Tissue_Type=Embryo;Biosample_Name=iMeLCs induced from primed UCLA1 hESCs;Cancer_Type=Normal;Region_Number=65001;Length=34707.324 kb;GEO_SRA=SRR7942729;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements system_category Embryo life_stage Embryonic track_name ATACdb_v1.03 iMeLCs ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic] [TFBS]
Neutrophil NGADBJ75VPSRPN • ATACdb v1.03 ATAC-seq Neutrophil TFBS Show metadata identifier NGADBJ75VPSRPN data_source ATACdb_v1.03 Download track Download number_of_intervals 3,285 bp_covered 46,362 output_type transcription factor binding sites genome_build hg38 cell_type Neutrophil biosample_type Primary cell biosample_term_id CL:0000775 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 83,426 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1130_hg38_motif_binding_sites.bed.gz processed_file_md5 49b16708111c988a5f32a5d262373105 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1130_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1130_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1130;Biosample_Type=Primary Cell;Tissue_Type=Other;Biosample_Name=neutrophil;Cancer_Type=Normal;Region_Number=1570;Length=1226.88 kb;GEO_SRA=SRR2999328;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/ system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Neutrophil ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Pancreatic islets NGADBJ7JXCWGDN • ATACdb v1.03 ATAC-seq Pancreatic islets Accessible chromatin Show metadata identifier NGADBJ7JXCWGDN data_source ATACdb_v1.03 Download track Download number_of_intervals 28,496 bp_covered 15,969,368 output_type accessible chromatin region genome_build hg38 cell_type Pancreatic islets biosample_type Tissue biosample_term_id UBERON:0000006 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 932,383 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1211_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 a7ef837ceab4eb69c83051b8aa6ec860 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1211_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1211_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1211.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1211.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 b03dec9baa8e81f7590079d9eda011a5 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1211;Biosample_Type=Tissue;Tissue_Type=Pancreas;Biosample_Name=Pancreatic islet;Cancer_Type=Normal;Region_Number=28588;Length=16054.248 kb;GEO_SRA=GSM1978243;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwangla system_category Digestive life_stage Unknown track_name ATACdb_v1.03 Pancreatic islets ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
hIPS NGADBJ7QFA2M6E • ATACdb v1.03 ATAC-seq hIPS TFBS Show metadata identifier NGADBJ7QFA2M6E data_source ATACdb_v1.03 Download track Download number_of_intervals 210,865 bp_covered 2,852,103 output_type transcription factor binding sites genome_build hg38 cell_type hIPS biosample_type Stem cell biosample_term_id CL:0000134 tissue_category Adipose encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 7,448,881 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0115_hg38_motif_binding_sites.bed.gz processed_file_md5 19e5467413c647d589bd2f5e4a9f69d6 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0115_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0115_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0115;Biosample_Type=Stem Cell;Tissue_Type=Adipose;Biosample_Name=ASCs;Cancer_Type=Normal;Region_Number=69663;Length=34915.424 kb;GEO_SRA=SRR6181355;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB system_category Integumentary life_stage Unknown track_name ATACdb_v1.03 hIPS ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
CD45RA+ CCR7+ CD8 T cell NGADBJACHXRQSE • ATACdb v1.03 ATAC-seq CD45RA+ CCR7+ CD8 T cell Accessible chromatin Show metadata identifier NGADBJACHXRQSE data_source ATACdb_v1.03 Download track Download number_of_intervals 975 bp_covered 392,214 output_type accessible chromatin region genome_build hg38 cell_type CD45RA+ CCR7+ CD8 T cell biosample_type Primary cell biosample_term_id CL:0000900 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 28,633 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0824_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 c32652924c587ac37146a702e3e0eaf1 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0824_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0824_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0824.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0824.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 a407a41602de0793cf06c4eeb9e03414 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0824;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=YF;Cancer_Type=The Yellow fever;Region_Number=981;Length=396.776 kb;GEO_SRA=SRR5839476;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 CD45RA+ CCR7+ CD8 T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Sperm NGADBJAVT2WF4W • ATACdb v1.03 ATAC-seq Sperm Accessible chromatin Show metadata identifier NGADBJAVT2WF4W data_source ATACdb_v1.03 Download track Download number_of_intervals 10,079 bp_covered 4,949,131 output_type accessible chromatin region genome_build hg38 cell_type Sperm biosample_type Tissue biosample_term_id CL:0000019 tissue_category Male Reproductive encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 323,340 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1361_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 472ae6c33b30736bd113808406247760 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1361_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1361_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1361.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1361.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 730f8332a645883eedd58dd379f545d4 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1361;Biosample_Type=Tissue;Tissue_Type=Sperm;Biosample_Name=Sperm;Cancer_Type=Normal;Region_Number=10114;Length=4982.369 kb;GEO_SRA=SRR7504538;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILE system_category Reproductive life_stage Unknown track_name ATACdb_v1.03 Sperm ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Neural cell NGADBJAW64GB6P • ATACdb v1.03 ATAC-seq Neural cell TFBS Show metadata identifier NGADBJAW64GB6P data_source ATACdb_v1.03 Download track Download number_of_intervals 93,154 bp_covered 1,234,427 output_type transcription factor binding sites genome_build hg38 cell_type Neural cell biosample_type Stem cell biosample_term_id CL:0002319 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 3,004,390 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0966_hg38_motif_binding_sites.bed.gz processed_file_md5 db1697b0067f094cd069814c6fe326e5 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0966_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0966_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0966;Biosample_Type=Stem Cell;Tissue_Type=Cortical Neurons;Biosample_Name=Cortical NSC;Cancer_Type=Other;Region_Number=21742;Length=10621.954 kb;GEO_SRA=SRR2097505;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisan system_category Nervous life_stage Unknown track_name ATACdb_v1.03 Neural cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
MRC-5 NGADBJB3DF53PA • ATACdb v1.03 ATAC-seq MRC-5 TFBS Show metadata identifier NGADBJB3DF53PA data_source ATACdb_v1.03 Download track Download number_of_intervals 152,837 bp_covered 2,062,129 output_type transcription factor binding sites genome_build hg38 cell_type MRC-5 biosample_type Cell line biosample_term_id EFO:0002835 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 5,453,500 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1107_hg38_motif_binding_sites.bed.gz processed_file_md5 a1cae891c5774958704e061eaf09084b wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1107_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1107_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1107;Biosample_Type=Cell Line;Tissue_Type=Lung;Biosample_Name=MRC-5;Cancer_Type=Normal;Region_Number=60049;Length=22927.939 kb;GEO_SRA=SRR3438294;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/F system_category Respiratory life_stage Unknown track_name ATACdb_v1.03 MRC-5 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Skin NGADBJBCIYEJXJ • ATACdb v1.03 ATAC-seq Skin Accessible chromatin Show metadata identifier NGADBJBCIYEJXJ data_source ATACdb_v1.03 Download track Download number_of_intervals 70,646 bp_covered 27,358,359 output_type accessible chromatin region genome_build hg38 cell_type Skin biosample_type Not applicable biosample_term_id UBERON:0002097 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 2,267,734 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1381_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 2cece1a65493f24f2b9ff78459fb62de wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1381_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1381_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1381.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1381.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 f77e2cdb256734186909ae4d3e7e843a data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1381;Biosample_Type=Other;Tissue_Type=Skin;Biosample_Name=Skin;Cancer_Type=Normal;Region_Number=70730;Length=27428.124 kb;GEO_SRA=SRR8558129;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2 system_category Integumentary life_stage Unknown track_name ATACdb_v1.03 Skin ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
CD4+ effector memory T cell NGADBJBI7YDGDU • ATACdb v1.03 ATAC-seq CD4+ effector memory T cell TFBS Show metadata identifier NGADBJBI7YDGDU data_source ATACdb_v1.03 Download track Download number_of_intervals 251,405 bp_covered 3,420,791 output_type transcription factor binding sites genome_build hg38 cell_type CD4+ effector memory T cell biosample_type Not applicable biosample_term_id CL:0000905 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 8,496,744 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0216_hg38_motif_binding_sites.bed.gz processed_file_md5 0ff9f43ae630a99596587d60773e1f80 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0216_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0216_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0216;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Effector_CD4pos_T;Cancer_Type=Normal;Region_Number=61012;Length=36047.67 kb;GEO_SRA=SRR7650746;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.or system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 CD4+ effector memory T cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
UCLA1 hESCs NGADBJC2RGLQ5C • ATACdb v1.03 ATAC-seq UCLA1 hESCs TFBS Show metadata identifier NGADBJC2RGLQ5C data_source ATACdb_v1.03 Download track Download number_of_intervals 147,813 bp_covered 1,979,353 output_type transcription factor binding sites genome_build hg38 cell_type UCLA1 hESCs biosample_type Stem cell biosample_term_id CL:0002322 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 4,955,177 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0637_hg38_motif_binding_sites.bed.gz processed_file_md5 0b164d19d38474dcb592de331be27aea wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0637_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0637_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0637;Biosample_Type=Stem Cell;Tissue_Type=Embryo;Biosample_Name=Untransfected UCLA1 hESCs cultured for 5 days in 5iLAF;Cancer_Type=Normal;Region_Number=37942;Length=20445.063 kb;GEO_SRA=SRR5815112;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_ system_category Embryo life_stage Embryonic track_name ATACdb_v1.03 UCLA1 hESCs ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic] [TFBS]