H3K36me3 • GM12878 NGENC23OPQHXES • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq GM12878 Histone Show metadata Download track Track metadata identifier NGENC23OPQHXES data_source ENCODE Download track Download number_of_intervals 29,343 bp_covered 12,166,277 output_type pseudoreplicated peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000AKE biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 537,361 downloaded_date 06/12/2022 release_date 10/29/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF732HMB.bed.gz processed_file_md5 85ebd2151ab07ec00e356fc46425606a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF732HMB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF732HMB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF732HMB/@@download/ENCFF732HMB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF732HMB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5f14dfbd72495e8507c180ed7034bc15 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000032,GEO:GSM733679;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AKE] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • BJ NGENC24JEA4W4M • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BJ Histone Show metadata Download track Track metadata identifier NGENC24JEA4W4M data_source ENCODE Download track Download number_of_intervals 88,661 bp_covered 32,627,952 output_type pseudoreplicated peaks genome_build hg38 cell_type BJ biosample_type Cell line biosample_term_id EFO:0002779 tissue_category Connective Tissue encode_experiment_id ENCSR000DQF biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,780,133 downloaded_date 06/12/2022 release_date 10/29/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF688LAS.bed.gz processed_file_md5 f28d5d5ca6f8c60636bd829797dca2d9 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF688LAS.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF688LAS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF688LAS/@@download/ENCFF688LAS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF688LAS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 70a892c76554221362aa8e114ef11d32 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens BJ;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000443,GEO:GSM945207;Project=ENCODE;Award=U54HG004592;Experiment_date_released=2011-02-11,2011-03-17;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BJ;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002779;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Skeletal life_stage Newborn track_name ENCODE BJ (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000DQF] [Life stage: Newborn] [Histone ChIP-seq peaks]
H3K36me3 • Melanocyte NGENC24SFKQFQA • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Melanocyte Histone Show metadata Download track Track metadata identifier NGENC24SFKQFQA data_source ENCODE Download track Download number_of_intervals 146,803 bp_covered 181,170,964 output_type pseudoreplicated peaks genome_build hg38 cell_type Melanocyte biosample_type Primary cell biosample_term_id CL:0000148 tissue_category Skin encode_experiment_id ENCSR505THJ biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,544,513 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF308RSM.bed.gz processed_file_md5 13723450c1d120c8bd33ba93c0dc1184 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF308RSM.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF308RSM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF308RSM/@@download/ENCFF308RSM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF308RSM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0d08c747e095a6556ae7b7207fd6040c data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens foreskin melanocyte male newborn;Lab=Joseph Costello, UCSF;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM958160;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=foreskin melanocyte;ENCODE_cell_slims=melanocyte;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:2000045;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Newborn track_name ENCODE Melanocyte (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR505THJ] [Life stage: Newborn] [Histone ChIP-seq peaks]
H3K36me3 • HEK293 NGENC24VJ44OET • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq HEK293 Histone Show metadata Download track Track metadata identifier NGENC24VJ44OET data_source ENCODE Download track Download number_of_intervals 146,935 bp_covered 161,465,572 output_type pseudoreplicated peaks genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR910LIE biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,501,084 downloaded_date 06/12/2022 release_date 10/28/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF988GDG.bed.gz processed_file_md5 bf19580a0863a2dfaf52ddfefac97653 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF988GDG.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF988GDG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF988GDG/@@download/ENCFF988GDG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF988GDG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ae40fe68985281b9dcff57e7b0ba3bb3 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE175320;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2017-06-01;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HEK293;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=human embryonic kidney cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Renal life_stage Embryonic track_name ENCODE HEK293 (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR910LIE] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • Kidney NGENC25LXM2MNW • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Kidney Histone Show metadata Download track Track metadata identifier NGENC25LXM2MNW data_source ENCODE Download track Download number_of_intervals 74,313 bp_covered 62,141,724 output_type pseudoreplicated peaks genome_build hg38 cell_type Kidney biosample_type Tissue biosample_term_id UBERON:0002113 tissue_category Kidney encode_experiment_id ENCSR331CRR biological_replicate 1 technical_replicate 1_4 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,660,420 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF294RUK.bed.gz processed_file_md5 8669b98147f211830ba5074bfe15502c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF294RUK.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF294RUK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF294RUK/@@download/ENCFF294RUK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF294RUK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 bd4b19c2df95c8c1c1fa9231a131c82c data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens kidney tissue male adult (50 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 50 years;Reference=PMID:32728046;External_resources=GEO:GSM773000;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=kidney;ENCODE_cell_slims=NR;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002113;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Renal life_stage Adult track_name ENCODE Kidney (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR331CRR] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • ES-I3 NGENC2AP4FORPJ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq ES-I3 Histone Show metadata Download track Track metadata identifier NGENC2AP4FORPJ data_source ENCODE Download track Download number_of_intervals 38,388 bp_covered 15,935,541 output_type pseudoreplicated peaks genome_build hg38 cell_type ES-I3 biosample_type Stem cell biosample_term_id EFO:0007076 tissue_category Embryo encode_experiment_id ENCSR844DRI biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 735,331 downloaded_date 06/12/2022 release_date 12/10/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF827QRV.bed.gz processed_file_md5 5a21979b02280a00dd5c34a36b8372c0 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF827QRV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF827QRV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF827QRV/@@download/ENCFF827QRV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF827QRV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 53447379ce99af5022da78b99013358a data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens ES-I3;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM537669,GEO:GSM537672;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=ES-I3;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007076;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE ES-I3 (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR844DRI] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • Skeletal muscle tissue NGENC2BRKYJTDY • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Skeletal muscle tissue Histone Show metadata Download track Track metadata identifier NGENC2BRKYJTDY data_source ENCODE Download track Download number_of_intervals 157,560 bp_covered 93,055,270 output_type pseudoreplicated peaks genome_build hg38 cell_type Skeletal muscle tissue biosample_type Tissue biosample_term_id UBERON:0001134 tissue_category Skeletal Muscle encode_experiment_id ENCSR836GCA biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,338,763 downloaded_date 06/12/2022 release_date 01/29/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF771NBZ.bed.gz processed_file_md5 2a5ea5676b8565d4fa2c865bee5c3123 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF771NBZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF771NBZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF771NBZ/@@download/ENCFF771NBZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF771NBZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 04505688f02e9c0f0c3210158303a2f7 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens skeletal muscle tissue tissue;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM621644;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=skeletal muscle tissue;ENCODE_cell_slims=NR;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001134;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Muscular life_stage Unknown track_name ENCODE Skeletal muscle tissue (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR836GCA] [Histone ChIP-seq peaks]
H3K36me3 • Mammary NGENC2DHIG42IM • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mammary Histone Show metadata Download track Track metadata identifier NGENC2DHIG42IM data_source ENCODE Download track Download number_of_intervals 49,144 bp_covered 27,279,521 output_type pseudoreplicated peaks genome_build hg38 cell_type Mammary biosample_type Stem cell biosample_term_id NCIT:C43595 tissue_category Stem Cell encode_experiment_id ENCSR635XBA biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 819,411 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF444LMB.bed.gz processed_file_md5 e548cc0a152c67848a1155d09c4fe114 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF444LMB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF444LMB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF444LMB/@@download/ENCFF444LMB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF444LMB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 736ac00b12fc14c6ae33d6e7534e35a8 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens mammary stem cell female adult (33 years);Lab=Joseph Costello, UCSF;ENCODE_internal_tags=RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=adult 33 years;Reference=NR;External_resources=NR;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=mammary stem cell;ENCODE_cell_slims=stem cell;ENCODE_system_slims=exocrine system,integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002451;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Stem Cell life_stage Adult track_name ENCODE Mammary (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR635XBA] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • SK-N-SH NGENC2EEED3DHB • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq SK-N-SH Histone Show metadata Download track Track metadata identifier NGENC2EEED3DHB data_source ENCODE Download track Download number_of_intervals 73,502 bp_covered 23,478,394 output_type pseudoreplicated peaks genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR000DXO biological_replicate 2 technical_replicate 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,357,801 downloaded_date 07/10/2025 release_date 10/28/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF849UPL.bed.gz processed_file_md5 7f351c58c0d5367ff136593a3966e0dd wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF849UPL.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF849UPL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF849UPL/@@download/ENCFF849UPL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF849UPL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c8f523bcee3ac698f7e279cf966fbd2c data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens SK-N-SH treated with 6 _M all-trans-retinoic acid for 48 hours;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=child 4 years;Reference=NR;External_resources=GEO:GSM945209,UCSC-ENCODE-hg19:wgEncodeEH000441;Project=ENCODE;Award=U54HG004592;Experiment_date_released=2011-02-11,2011-03-17;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=SKNSH;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Child track_name ENCODE SK-N-SH (repl. 2) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000DXO] [Life stage: Child] [Histone ChIP-seq peaks]
H3K36me3 • Pancreas NGENC2ESRAWCAA • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Pancreas Histone Show metadata Download track Track metadata identifier NGENC2ESRAWCAA data_source ENCODE Download track Download number_of_intervals 2,177 bp_covered 792,826 output_type pseudoreplicated peaks genome_build hg38 cell_type Pancreas biosample_type Tissue biosample_term_id UBERON:0001264 tissue_category Pancreas encode_experiment_id ENCSR372OTD biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 34,448 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF642KGB.bed.gz processed_file_md5 b608721d655c3e96387ae418deb34e8b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF642KGB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF642KGB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF642KGB/@@download/ENCFF642KGB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF642KGB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9ca9e03be266c0199db6f7edb5d62f37 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens endocrine pancreas tissue adult (59 years);Lab=Joseph Costello, UCSF;ENCODE_internal_tags=RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=adult 59 years;Reference=PMID:32728046;External_resources=GEO:GSM1127069;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=endocrine pancreas;ENCODE_cell_slims=NR;ENCODE_system_slims=endocrine system;ENCODE_biosample_term_synonyms=endocrine pancreas,pars endocrina pancreatis;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000016;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Endocrine life_stage Adult track_name ENCODE Pancreas (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR372OTD] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • CD8+ alpha-beta memory cell NGENC2F4FHNCSL • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq CD8+ alpha-beta memory cell Histone Show metadata Download track Track metadata identifier NGENC2F4FHNCSL data_source ENCODE Download track Download number_of_intervals 223,976 bp_covered 68,914,746 output_type pseudoreplicated peaks genome_build hg38 cell_type CD8+ alpha-beta memory cell biosample_type Primary cell biosample_term_id CL:0000909 tissue_category Blood encode_experiment_id ENCSR239OWL biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K36me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 5,275,633 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF352ICG.bed.gz processed_file_md5 0cdeb19c4562f5a12a1059572462cb05 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF352ICG.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF352ICG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF352ICG/@@download/ENCFF352ICG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF352ICG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 fc3702ed28e55b89bd310a7340ff1310 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens with multiple sclerosis| CD8-positive, alpha-beta memory T cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=YaleImmuneCells;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE176816;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-07-30,2020-07-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=CD8-positive, alpha-beta memory T cell;ENCODE_cell_slims=T cell,CD8+ T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=CD8-positive, alpha-beta memory T-lymphocyte,CD8-positive, alpha-beta memory T-cell,CD8-positive, alpha-beta memory T lymphocyte;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000909;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE CD8+ alpha-beta memory cell (repl. 1) Mint-ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR239OWL] [Histone ChIP-seq peaks]
H3K36me3 • Left ventricle NGENC2GYXRSYCH • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Left ventricle Histone Show metadata Download track Track metadata identifier NGENC2GYXRSYCH data_source ENCODE Download track Download number_of_intervals 85,878 bp_covered 178,951,701 output_type pseudoreplicated peaks genome_build hg38 cell_type Left ventricle biosample_type Tissue biosample_term_id UBERON:0002084 tissue_category Heart encode_experiment_id ENCSR017LLJ biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,067,451 downloaded_date 06/12/2022 release_date 09/16/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF247HGC.bed.gz processed_file_md5 dcb5d3d1925dd29c0e396d1b036725d8 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF247HGC.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF247HGC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF247HGC/@@download/ENCFF247HGC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF247HGC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 63c9383bd0593f6d30f47e5df3fa4377 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens heart left ventricle tissue female adult (56 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 56 years;Reference=NR;External_resources=GEO:GSE208466;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-02-04,2021-09-21;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=heart left ventricle;ENCODE_cell_slims=NR;ENCODE_system_slims=circulatory system;ENCODE_biosample_term_synonyms=cardiac left ventricle,left cardiac ventricle,left ventricle of heart,left ventricle;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002084;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Left ventricle (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR017LLJ] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • GM23338 NGENC2HKQIXANF • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq GM23338 Histone Show metadata Download track Track metadata identifier NGENC2HKQIXANF data_source ENCODE Download track Download number_of_intervals 49,333 bp_covered 26,299,784 output_type pseudoreplicated peaks genome_build hg38 cell_type GM23338 biosample_type Cell line biosample_term_id EFO:0007950 tissue_category iPSC encode_experiment_id ENCSR236YPE biological_replicate 2 technical_replicate 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 970,579 downloaded_date 06/12/2022 release_date 03/03/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF236APS.bed.gz processed_file_md5 9efb8036eb066b4f349f955f6bb54bbd wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF236APS.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF236APS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF236APS/@@download/ENCFF236APS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF236APS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 adf29f77afd3376dcd1fd1aa07949312 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens GM23338 originated from GM23248;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE95994;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-05-03;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM23338;ENCODE_cell_slims=induced pluripotent stem cell,stem cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007950;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Stem Cell life_stage Adult track_name ENCODE GM23338 (repl. 2) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR236YPE] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • Endothelial cell NGENC2IVF7NINH • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Endothelial cell Histone Show metadata Download track Track metadata identifier NGENC2IVF7NINH data_source ENCODE Download track Download number_of_intervals 72,145 bp_covered 34,361,291 output_type pseudoreplicated peaks genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Umbilical Cord encode_experiment_id ENCSR000ALC biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,455,978 downloaded_date 06/12/2022 release_date 10/29/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF535FBF.bed.gz processed_file_md5 f82c48bdb518f128290a9684be3196d7 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF535FBF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF535FBF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF535FBF/@@download/ENCFF535FBF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF535FBF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d03a3a4ef436c6b2ea432e850deaad9b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens endothelial cell of umbilical vein newborn;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000056,GEO:GSM733757;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=endothelial cell of umbilical vein;ENCODE_cell_slims=endothelial cell,epithelial cell;ENCODE_system_slims=reproductive system,circulatory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002618;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Newborn track_name ENCODE Endothelial cell (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ALC] [Life stage: Newborn] [Histone ChIP-seq peaks]
H3K36me3 • Fibroblast NGENC2IZY3CJTU • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Fibroblast Histone Show metadata Download track Track metadata identifier NGENC2IZY3CJTU data_source ENCODE Download track Download number_of_intervals 81,650 bp_covered 61,086,746 output_type pseudoreplicated peaks genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Breast encode_experiment_id ENCSR728GTL biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,763,555 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF876KZT.bed.gz processed_file_md5 123e34709a9e816256e0f228e3083d7d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF876KZT.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF876KZT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF876KZT/@@download/ENCFF876KZT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF876KZT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ca496e196a7d08704dec132a4d82505a data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens fibroblast of breast female adult (17 years);Lab=Joseph Costello, UCSF;ENCODE_internal_tags=RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=adult 17 years;Reference=PMID:32728046;External_resources=GEO:GSM1127068;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=fibroblast of breast;ENCODE_cell_slims=fibroblast;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0003079;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Adult track_name ENCODE Fibroblast (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR728GTL] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • Adipose NGENC2J5LYVILZ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Adipose Histone Show metadata Download track Track metadata identifier NGENC2J5LYVILZ data_source ENCODE Download track Download number_of_intervals 139,590 bp_covered 106,169,539 output_type pseudoreplicated peaks genome_build hg38 cell_type Adipose biosample_type Tissue biosample_term_id NCIT:C12472 tissue_category Adipose encode_experiment_id ENCSR345PSR biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,167,500 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF255GKF.bed.gz processed_file_md5 f88cef75c3a3f0b752a57c06256994c5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF255GKF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF255GKF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF255GKF/@@download/ENCFF255GKF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF255GKF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 25979e19c9950504a196f69f1d07995e data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (59 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 59 years;Reference=PMID:32728046;External_resources=GEO:GSM669952;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=subcutaneous abdominal adipose tissue;ENCODE_cell_slims=NR;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=subcutaneous fat of abdominal region,subcutaneous abdominal fat,abdominal subcutaneous adipose tissue;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0014455;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Adult track_name ENCODE Adipose (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR345PSR] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • Hepatocyte NGENC2J5XOMLVG • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Hepatocyte Histone Show metadata Download track Track metadata identifier NGENC2J5XOMLVG data_source ENCODE Download track Download number_of_intervals 740 bp_covered 335,591 output_type pseudoreplicated peaks genome_build hg38 cell_type Hepatocyte biosample_type In vitro differentiated cells biosample_term_id CL:0000182 tissue_category Liver encode_experiment_id ENCSR034BEQ biological_replicate 2 technical_replicate 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 14,954 downloaded_date 06/12/2022 release_date 10/29/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF456UED.bed.gz processed_file_md5 6463d3cd080c6b28676ca78fc2c37a89 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF456UED.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF456UED.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF456UED/@@download/ENCFF456UED.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF456UED.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2be41f4940452fc3fcba4cf7de057d63 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens hepatocyte originated from H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,SESCC,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSE95891;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-04-27;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=hepatocyte;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000182;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Embryonic track_name ENCODE Hepatocyte (repl. 2) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR034BEQ] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • GM06990 NGENC2J6LLEG44 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq GM06990 Histone Show metadata Download track Track metadata identifier NGENC2J6LLEG44 data_source ENCODE Download track Download number_of_intervals 95,926 bp_covered 25,948,361 output_type pseudoreplicated peaks genome_build hg38 cell_type GM06990 biosample_type Cell line biosample_term_id EFO:0002783 tissue_category Blood encode_experiment_id ENCSR000DQT biological_replicate 2 technical_replicate 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,760,942 downloaded_date 06/12/2022 release_date 10/29/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF909UIN.bed.gz processed_file_md5 53d123c6e620eadd3c28fd521d0dc85a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF909UIN.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF909UIN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF909UIN/@@download/ENCFF909UIN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF909UIN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c5660aa33752307da4086e8a9378f9fd data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens GM06990;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000444,GEO:GSM945213;Project=ENCODE;Award=U54HG004592;Experiment_date_released=2011-02-11,2011-03-17;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM06990;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002783;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE GM06990 (repl. 2) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000DQT] [Histone ChIP-seq peaks]
H3K36me3 • Brain NGENC2K3ZJAOEC • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Brain Histone Show metadata Download track Track metadata identifier NGENC2K3ZJAOEC data_source ENCODE Download track Download number_of_intervals 333,329 bp_covered 217,184,546 output_type pseudoreplicated peaks genome_build hg38 cell_type Brain biosample_type Organoid biosample_term_id UBERON:0000955 tissue_category Brain encode_experiment_id ENCSR073GDR biological_replicate 1, 2, 3 technical_replicate 1_1, 1_2, 2_1, 2_2, 3_1, 3_2 antibody H3K36me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 9,265,465 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF988PDZ.bed.gz processed_file_md5 d3aecdd1ba9d81ee6939a4d485cdfa93 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF988PDZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF988PDZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF988PDZ/@@download/ENCFF988PDZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF988PDZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9812355c3ca47e0fee2eeb0d513bc266 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens brain organoid, 90 days post differentiation;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE176928;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-07-30,2020-07-06;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=brain;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000955;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Brain (repl. 1, 2, 3) Mint-ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR073GDR] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • Progenitor cell of endocrine pancreas NGENC2KO2DBEHJ • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Progenitor cell of endocrine pancreas Histone Show metadata Download track Track metadata identifier NGENC2KO2DBEHJ data_source ENCODE Download track Download number_of_intervals 335,054 bp_covered 112,748,224 output_type pseudoreplicated peaks genome_build hg38 cell_type Progenitor cell of endocrine pancreas biosample_type In vitro differentiated cells biosample_term_id CL:0002351 tissue_category Pancreas encode_experiment_id ENCSR409VPZ biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1, 2_2 antibody H3K36me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 7,762,393 downloaded_date 06/12/2022 release_date 06/18/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF547GLI.bed.gz processed_file_md5 826c6e3088cbe0b5ccb7d44a4fe2e9c5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF547GLI.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF547GLI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF547GLI/@@download/ENCFF547GLI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF547GLI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 cb2459baa63f8694a225f2a16d1874f6 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens progenitor cell of endocrine pancreas;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE209202;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-04-29,2021-04-28;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=progenitor cell of endocrine pancreas;ENCODE_cell_slims=progenitor cell;ENCODE_system_slims=endocrine system;ENCODE_biosample_term_synonyms=pancreatic islet progenitor cell,pancreatic endocrine progenitor;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002351;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Endocrine life_stage Embryonic track_name ENCODE Progenitor cell of endocrine pancreas (repl. 1, 2) Mint-ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR409VPZ] [Life stage: Embryonic] [Histone ChIP-seq peaks]