H3K36me3 • B cell NGENCEKIAO42MZ • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq B cell Histone Show metadata Download track Track metadata identifier NGENCEKIAO42MZ data_source ENCODE Download track Download number_of_intervals 331,579 bp_covered 225,568,247 output_type pseudoreplicated peaks genome_build hg38 cell_type B cell biosample_type Primary cell biosample_term_id CL:0000236 tissue_category Blood encode_experiment_id ENCSR582AGX biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K36me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 8,074,240 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF798JUM.bed.gz processed_file_md5 0084236b098ec49af809f8b744b7f425 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF798JUM.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF798JUM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF798JUM/@@download/ENCFF798JUM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF798JUM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5bc2ff18c520365efca68144769eba3d data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens activated B cell male adult (22 years) treated with 0.5 _M CpG ODN for 24 hours;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 22 years;Reference=NR;External_resources=GEO:GSE177442;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-14,2020-08-04;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=activated B cell;ENCODE_cell_slims=leukocyte,B cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0000506;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE B cell (repl. 1) Mint-ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR582AGX] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • Osteoblast NGENCEL65644UL • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Osteoblast Histone Show metadata Download track Track metadata identifier NGENCEL65644UL data_source ENCODE Download track Download number_of_intervals 112,368 bp_covered 106,652,918 output_type pseudoreplicated peaks genome_build hg38 cell_type Osteoblast biosample_type Primary cell biosample_term_id CL:0000062 tissue_category Bone encode_experiment_id ENCSR000API biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,618,580 downloaded_date 06/12/2022 release_date 10/29/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF306SGA.bed.gz processed_file_md5 a9e8d5e61d4c825aeb6593f1b1bd2997 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF306SGA.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF306SGA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF306SGA/@@download/ENCFF306SGA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF306SGA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5e889dcc8d9d82be5626325390598799 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens osteoblast;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM733721,UCSC-ENCODE-hg19:wgEncodeEH001044;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=osteoblast;ENCODE_cell_slims=connective tissue cell;ENCODE_system_slims=skeletal system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000062;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Skeletal life_stage Unknown track_name ENCODE Osteoblast (repl. 1, 2) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000API] [Histone ChIP-seq peaks]
H3K36me3 • NCI-H929 NGENCELZJC33SC • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq NCI-H929 Histone Show metadata Download track Track metadata identifier NGENCELZJC33SC data_source ENCODE Download track Download number_of_intervals 27,389 bp_covered 17,436,778 output_type pseudoreplicated peaks genome_build hg38 cell_type NCI-H929 biosample_type Cell line biosample_term_id EFO:0001221 tissue_category Immune encode_experiment_id ENCSR562JTY biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 634,176 downloaded_date 05/15/2024 release_date 01/21/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF515JKV.bed.gz processed_file_md5 045a00df534b21ef14e79dea92fd2d92 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF515JKV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF515JKV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF515JKV/@@download/ENCFF515JKV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF515JKV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5ba484b7fbb992647227c1d0b26bf97b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens NCI-H929;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 62 years;Reference=PMID:32728046;External_resources=GEO:GSE96236;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-19,2016-10-12;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=NCI-H929;ENCODE_cell_slims=B cell,cancer cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001221;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE NCI-H929 (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR562JTY] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • Thyroid gland NGENCEMI4Q3NRN • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Thyroid gland Histone Show metadata Download track Track metadata identifier NGENCEMI4Q3NRN data_source ENCODE Download track Download number_of_intervals 33,035 bp_covered 20,096,801 output_type pseudoreplicated peaks genome_build hg38 cell_type Thyroid gland biosample_type Tissue biosample_term_id UBERON:0002046 tissue_category Endocrine encode_experiment_id ENCSR225VCV biological_replicate 2 technical_replicate 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 678,725 downloaded_date 06/12/2022 release_date 10/28/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF882ZTN.bed.gz processed_file_md5 cef871956215a5d3fbba78c6d7846468 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF882ZTN.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF882ZTN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF882ZTN/@@download/ENCFF882ZTN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF882ZTN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 27346b4a6d50f8f892f25c2002451c13 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens thyroid gland tissue male adult (37 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2,ENTEx;Life_stage_age=adult 37 years;Reference=PMID:32728046;External_resources=GEO:GSE95989;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-05-23;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=thyroid gland;ENCODE_cell_slims=NR;ENCODE_system_slims=endocrine system;ENCODE_biosample_term_synonyms=thyroid;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002046;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Endocrine life_stage Adult track_name ENCODE Thyroid gland (repl. 2) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR225VCV] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • SK-N-SH NGENCENEK6Y7RK • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq SK-N-SH Histone Show metadata Download track Track metadata identifier NGENCENEK6Y7RK data_source ENCODE Download track Download number_of_intervals 148,089 bp_covered 142,078,850 output_type replicated peaks genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR978CNH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,729,895 downloaded_date 06/04/2018 release_date 10/17/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF765ISG.bed.gz processed_file_md5 1b55b2216fef661c350c8bd3f89568a4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF765ISG.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF765ISG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF765ISG/@@download/ENCFF765ISG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF765ISG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 25f92ff8ae1ebcb26f16c7d643c1e0dc data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens SK-N-SH;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=child 4 years;Reference=PMID:32728046;External_resources=GEO:GSE96503;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-11-04,2015-08-03;Submitted_track_name=final.replicated.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=SKNSH;Analysis_title=ENCODE3 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Child track_name ENCODE SK-N-SH (repl. 1, 2) Histone ChIP-seq H3K36me3 replicated peaks (narrowPeak) [Experiment: ENCSR978CNH] [Life stage: Child] [Histone ChIP-seq peaks]
H3K36me3 • Mesodermal cell NGENCENMOBCMP5 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mesodermal cell Histone Show metadata Download track Track metadata identifier NGENCENMOBCMP5 data_source ENCODE Download track Download number_of_intervals 155,896 bp_covered 130,153,891 output_type pseudoreplicated peaks genome_build hg38 cell_type Mesodermal cell biosample_type In vitro differentiated cells biosample_term_id CL:0000222 tissue_category Embryo encode_experiment_id ENCSR100LWU biological_replicate 1 technical_replicate 1_4 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,171,968 downloaded_date 06/12/2022 release_date 03/18/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF708UFW.bed.gz processed_file_md5 fbc64d8e08b0a2caac9a1851dca5c104 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF708UFW.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF708UFW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF708UFW/@@download/ENCFF708UFW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF708UFW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 83f976b754104500519ded1cc30c256f data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens mesodermal cell originated from HUES64;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM916068,GEO:GSM916072;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=false;ENCODE_biosample_term_name=mesodermal cell;ENCODE_cell_slims=embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=mesoblast,mesoderm cell;Analysis_title=ENCODE4 v1.7.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000222;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Mesodermal cell (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR100LWU] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • Brain NGENCEO53CYQGH • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Brain Histone Show metadata Download track Track metadata identifier NGENCEO53CYQGH data_source ENCODE Download track Download number_of_intervals 119,065 bp_covered 113,780,811 output_type replicated peaks genome_build hg38 cell_type Brain biosample_type Tissue biosample_term_id UBERON:0000955 tissue_category Brain encode_experiment_id ENCSR869WSC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,414,740 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF965FCL.bed.gz processed_file_md5 a68e8a32bfc4a07e2369dea8ef4d50e3 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF965FCL.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF965FCL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF965FCL/@@download/ENCFF965FCL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF965FCL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 05c311900bd8e9b9426e317445390ffb data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens brain tissue female embryo (17 weeks);Lab=Joseph Costello, UCSF;ENCODE_internal_tags=RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=embryonic 17 weeks;Reference=PMID:32728046;External_resources=GEO:GSM806946,GEO:GSM806938;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=false;ENCODE_biosample_term_name=brain;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000955;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Embryonic track_name ENCODE Brain (repl. 1, 2) Histone ChIP-seq H3K36me3 replicated peaks (narrowPeak) [Experiment: ENCSR869WSC] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • T-helper 17 cell NGENCEQLJ53YDI • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq T-helper 17 cell Histone Show metadata Download track Track metadata identifier NGENCEQLJ53YDI data_source ENCODE Download track Download number_of_intervals 116,150 bp_covered 127,768,414 output_type pseudoreplicated peaks genome_build hg38 cell_type T-helper 17 cell biosample_type Primary cell biosample_term_id CL:0000899 tissue_category Immune encode_experiment_id ENCSR998RVD biological_replicate 1, 2 technical_replicate 1_3, 2_2 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,887,648 downloaded_date 07/10/2025 release_date 01/29/2021 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF445TJM.bed.gz processed_file_md5 c7b13d9f5d0f02b0d6f396320d84d3b5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF445TJM.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF445TJM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF445TJM/@@download/ENCFF445TJM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF445TJM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 be1702778e74c3c8962ea1f340ce1f72 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens T-helper 17 cell treated with phorbol 13-acetate 12-myristate, ionomycin;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM916028,GEO:GSM997226;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=T-helper 17 cell;ENCODE_cell_slims=T cell,leukocyte,CD4+ T cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=Th17 T-lymphocyte,T helper cells type 17,Th17 cell,helper T cell type 17,Th17 CD4+ T cell,Th17 T lymphocyte,Th17 T-cell,Th17 T cell,T(H)-17 cell,IL-17-producing CD4+ T helper;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000899;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Unknown track_name ENCODE T-helper 17 cell (repl. 1, 2) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR998RVD] [Histone ChIP-seq peaks]
H3K36me3 • Mesenchymal stem cell NGENCERCG7PEWH • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mesenchymal stem cell Histone Show metadata Download track Track metadata identifier NGENCERCG7PEWH data_source ENCODE Download track Download number_of_intervals 150,552 bp_covered 189,005,773 output_type pseudoreplicated peaks genome_build hg38 cell_type Mesenchymal stem cell biosample_type Stem cell biosample_term_id CL:0000134 tissue_category Connective Tissue encode_experiment_id ENCSR555QHZ biological_replicate 2 technical_replicate 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,699,824 downloaded_date 06/12/2022 release_date 01/29/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF658AWX.bed.gz processed_file_md5 975898f7fe586383b455f42fada60dff wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF658AWX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF658AWX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF658AWX/@@download/ENCFF658AWX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF658AWX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c2df2983974ff2f1705988110e3ada67 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens mesenchymal stem cell female adult and female adult (41 years) and female adult (59 years), originated from adipose tissue;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM621446,GEO:GSM772763,GEO:GSM772820;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=false;ENCODE_biosample_term_name=mesenchymal stem cell;ENCODE_cell_slims=stem cell,connective tissue cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000134;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Skeletal life_stage Adult track_name ENCODE Mesenchymal stem cell (repl. 2) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR555QHZ] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • Aorta NGENCERJFHBFIE • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Aorta Histone Show metadata Download track Track metadata identifier NGENCERJFHBFIE data_source ENCODE Download track Download number_of_intervals 89,886 bp_covered 83,648,236 output_type pseudoreplicated peaks genome_build hg38 cell_type Aorta biosample_type Tissue biosample_term_id UBERON:0000947 tissue_category Blood Vessel encode_experiment_id ENCSR736PKV biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,058,295 downloaded_date 06/12/2022 release_date 10/29/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF734CWC.bed.gz processed_file_md5 60ffd11bb1a35f0ed65cbf06529c4697 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF734CWC.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF734CWC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF734CWC/@@download/ENCFF734CWC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF734CWC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6041d401870faf82fde59c966fbedba8 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens ascending aorta tissue female adult (51 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2,ENTEx;Life_stage_age=adult 51 years;Reference=PMID:32728046;External_resources=GEO:GSE101264;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-11-07,2017-06-02;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=ascending aorta;ENCODE_cell_slims=NR;ENCODE_system_slims=circulatory system;ENCODE_biosample_term_synonyms=ascending thoracic aorta,pars ascendens aortae;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001496;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Aorta (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR736PKV] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • PC-3 NGENCETG3XHABV • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq PC-3 Histone Show metadata Download track Track metadata identifier NGENCETG3XHABV data_source ENCODE Download track Download number_of_intervals 99,783 bp_covered 76,961,022 output_type pseudoreplicated peaks genome_build hg38 cell_type PC-3 biosample_type Cell line biosample_term_id EFO:0002074 tissue_category Male Reproductive encode_experiment_id ENCSR849APH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,387,425 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF464YOX.bed.gz processed_file_md5 deaf2f6a59983616753a1cfe48f7da6c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF464YOX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF464YOX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF464YOX/@@download/ENCFF464YOX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF464YOX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 91c2a5ce797ac6a4003653122501a860 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens PC-3;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 62 years;Reference=PMID:32728046;External_resources=GEO:GSE96418;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-05-03,2015-08-03;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=PC-3;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=PC-3 cell,PC3 cell,PC3;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002074;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Adult track_name ENCODE PC-3 (repl. 1, 2) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR849APH] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • MCF-7 NGENCETKGKKICV • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq MCF-7 Histone Show metadata Download track Track metadata identifier NGENCETKGKKICV data_source ENCODE Download track Download number_of_intervals 73,954 bp_covered 103,229,820 output_type replicated peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR610IYQ biological_replicate 1, 2 technical_replicate 1_1, 2_1, 2_2 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,854,348 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF269PZQ.bed.gz processed_file_md5 1201277a5760ebd1497dd07686c4ebf5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF269PZQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF269PZQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF269PZQ/@@download/ENCFF269PZQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF269PZQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 21a3ca16cd43d46cf2a0c564563896a4 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 69 years;Reference=NR;External_resources=GEO:GSE174945;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-01-13,2015-08-03;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,integumental system;ENCODE_biosample_term_synonyms=MCF7,MCF-7 cell,MCF7 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1, 2) Histone ChIP-seq H3K36me3 replicated peaks (narrowPeak) [Experiment: ENCSR610IYQ] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • Transverse colon NGENCEUHFQVBSM • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Transverse colon Histone Show metadata Download track Track metadata identifier NGENCEUHFQVBSM data_source ENCODE Download track Download number_of_intervals 47,544 bp_covered 48,873,175 output_type pseudoreplicated peaks genome_build hg38 cell_type Transverse colon biosample_type Tissue biosample_term_id UBERON:0001157 tissue_category Digestive encode_experiment_id ENCSR101EEJ biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,160,700 downloaded_date 06/12/2022 release_date 09/22/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF115FNO.bed.gz processed_file_md5 fa3e3703cfcdbf70511a32f4a6603a74 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF115FNO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF115FNO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF115FNO/@@download/ENCFF115FNO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF115FNO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 20cc32b7447300efba7bea48811a5cf5 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens transverse colon tissue male adult (54 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx;Life_stage_age=adult 54 years;Reference=NR;External_resources=GEO:GSE142904;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2017-08-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=transverse colon;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=colon transversum;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001157;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE Transverse colon (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR101EEJ] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • Tibial nerve NGENCEVG3VM6LZ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Tibial nerve Histone Show metadata Download track Track metadata identifier NGENCEVG3VM6LZ data_source ENCODE Download track Download number_of_intervals 25,254 bp_covered 20,950,300 output_type pseudoreplicated peaks genome_build hg38 cell_type Tibial nerve biosample_type Tissue biosample_term_id UBERON:0001323 tissue_category Nervous encode_experiment_id ENCSR925FSB biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 568,147 downloaded_date 06/12/2022 release_date 09/23/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF535DBU.bed.gz processed_file_md5 2152fdbe458782cd7182b1617a524a9d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF535DBU.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF535DBU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF535DBU/@@download/ENCFF535DBU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF535DBU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 dacae1272cd0695b788aefe94fe716f3 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens tibial nerve tissue male adult (54 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx;Life_stage_age=adult 54 years;Reference=NR;External_resources=GEO:GSE143110;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2019-02-12,2019-02-08;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=tibial nerve;ENCODE_cell_slims=NR;ENCODE_system_slims=peripheral nervous system;ENCODE_biosample_term_synonyms=medial popliteal nerve;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001323;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Tibial nerve (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR925FSB] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • Muscle NGENCEW5LQJQVR • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Muscle Histone Show metadata Download track Track metadata identifier NGENCEW5LQJQVR data_source ENCODE Download track Download number_of_intervals 168,050 bp_covered 99,562,594 output_type pseudoreplicated peaks genome_build hg38 cell_type Muscle biosample_type Tissue biosample_term_id NCIT:C13056 tissue_category Skeletal Muscle encode_experiment_id ENCSR193XWO biological_replicate 1 technical_replicate 1_2 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,555,843 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF735NLY.bed.gz processed_file_md5 de6b84ce3062c5f2eb7fd38ad5f95ffe wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF735NLY.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF735NLY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF735NLY/@@download/ENCFF735NLY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF735NLY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 85ad8ba0f28e1546b6ca5e8bdf6b5e8d data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens muscle of trunk tissue female embryo (115 days);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=embryonic 115 days;Reference=PMID:32728046;External_resources=GEO:GSM1160195;Project=Roadmap;Award=U01ES017156;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=muscle of trunk;ENCODE_cell_slims=NR;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=trunk musculature,muscle organ of trunk,torso muscle organ,trunk muscle,muscle organ of torso,muscle of trunk,trunk muscle organ,body musculature;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001774;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Muscular life_stage Embryonic track_name ENCODE Muscle (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR193XWO] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • H1-hESC NGENCEX6K573ON • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H1-hESC Histone Show metadata Download track Track metadata identifier NGENCEX6K573ON data_source ENCODE Download track Download number_of_intervals 70,372 bp_covered 41,461,467 output_type pseudoreplicated peaks genome_build hg38 cell_type H1-hESC biosample_type Cell line biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000ANB biological_replicate 1, 2 technical_replicate 1_1, 2_2 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,608,010 downloaded_date 05/15/2024 release_date 01/15/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF516CFO.bed.gz processed_file_md5 527bc01820a375b3a89953bcf24751cc wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF516CFO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF516CFO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF516CFO/@@download/ENCFF516CFO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF516CFO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 34db24289e8b269a40fd3f60563d3f34 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM733725,UCSC-ENCODE-hg19:wgEncodeEH000107;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1, 2) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ANB] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • CD4+ CD25+ alpha-beta Treg NGENCEY54ITOCS • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq CD4+ CD25+ alpha-beta Treg Histone Show metadata Download track Track metadata identifier NGENCEY54ITOCS data_source ENCODE Download track Download number_of_intervals 227,754 bp_covered 154,539,852 output_type pseudoreplicated peaks genome_build hg38 cell_type CD4+ CD25+ alpha-beta Treg biosample_type Primary cell biosample_term_id CL:0000792 tissue_category Blood encode_experiment_id ENCSR360MUC biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K36me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 6,054,772 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF414TVQ.bed.gz processed_file_md5 5493359baa3bf1736b4f1ba4c58083f7 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF414TVQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF414TVQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF414TVQ/@@download/ENCFF414TVQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF414TVQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 fd3e329a270923a012c0eb35eb3f0215 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=YaleImmuneCells;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE177277;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-09-06,2020-08-04;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=CD4-positive, CD25-positive, alpha-beta regulatory T cell;ENCODE_cell_slims=T cell,leukocyte,CD4+ T cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=CD4-positive, CD25-positive, alpha-beta regulatory T-cell,CD4-positive, CD25-positive, alpha-beta regulatory T-lymphocyte,CD4-positive, CD25-positive, alpha-beta regulatory T lymphocyte;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000792;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE CD4+ CD25+ alpha-beta Treg (repl. 1) Mint-ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR360MUC] [Histone ChIP-seq peaks]
H3K36me3 • Placental basal plate NGENCEYCBWDV3G • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Placental basal plate Histone Show metadata Download track Track metadata identifier NGENCEYCBWDV3G data_source ENCODE Download track Download number_of_intervals 16,411 bp_covered 12,037,827 output_type pseudoreplicated peaks genome_build hg38 cell_type Placental basal plate biosample_type Tissue biosample_term_id UBERON:8600019 tissue_category Placenta encode_experiment_id ENCSR629RBC biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 345,038 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF417SUJ.bed.gz processed_file_md5 a871cb56857d54cd9275c73068ee539b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF417SUJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF417SUJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF417SUJ/@@download/ENCFF417SUJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF417SUJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d25607e67149db3e04525319434e8fb2 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens placental basal plate tissue male embryo (38 weeks);Lab=Joseph Costello, UCSF;ENCODE_internal_tags=RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=embryonic 38 weeks;Reference=NR;External_resources=NR;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=placental basal plate;ENCODE_cell_slims=NR;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0003013;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Placental life_stage Embryonic track_name ENCODE Placental basal plate (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR629RBC] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • Mesothelial cell NGENCEZGI4RVZ7 • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Mesothelial cell Histone Show metadata Download track Track metadata identifier NGENCEZGI4RVZ7 data_source ENCODE Download track Download number_of_intervals 324,605 bp_covered 157,540,954 output_type pseudoreplicated peaks genome_build hg38 cell_type Mesothelial cell biosample_type In vitro differentiated cells biosample_term_id CL:0000077 tissue_category Heart encode_experiment_id ENCSR191AZW biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1, 2_2 antibody H3K36me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 8,728,561 downloaded_date 06/12/2022 release_date 06/18/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF217XCV.bed.gz processed_file_md5 2413fca02bab5e3c7c8b9ab443ec1580 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF217XCV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF217XCV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF217XCV/@@download/ENCFF217XCV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF217XCV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8faf7f588ea97797be177e62e245c962 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens mesothelial cell of epicardium;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE187282;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-06-24;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=mesothelial cell of epicardium;ENCODE_cell_slims=cardiocyte,epithelial cell;ENCODE_system_slims=circulatory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0011019;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Embryonic track_name ENCODE Mesothelial cell (repl. 1, 2) Mint-ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR191AZW] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • Astrocyte NGENCEZVQIZG3B • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Astrocyte Histone Show metadata Download track Track metadata identifier NGENCEZVQIZG3B data_source ENCODE Download track Download number_of_intervals 87,632 bp_covered 55,342,241 output_type replicated peaks genome_build hg38 cell_type Astrocyte biosample_type Primary cell biosample_term_id CL:0000127 tissue_category Brain encode_experiment_id ENCSR000AOS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,016,846 downloaded_date 06/12/2022 release_date 10/29/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF341BTX.bed.gz processed_file_md5 5b5fec5306b835951d4aacb06f877aed wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF341BTX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF341BTX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF341BTX/@@download/ENCFF341BTX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF341BTX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d76c85163ad396868d488138a7b880ee data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens astrocyte;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001030,GEO:GSM733751;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=astrocyte;ENCODE_cell_slims=neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=astrocytic glia;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000127;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Unknown track_name ENCODE Astrocyte (repl. 1, 2) Histone ChIP-seq H3K36me3 replicated peaks (narrowPeak) [Experiment: ENCSR000AOS] [Histone ChIP-seq peaks]