H3K36me3 • Trophoblast NGENCJ4MPY54WD • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Trophoblast Histone Show metadata Download track Track metadata identifier NGENCJ4MPY54WD data_source ENCODE Download track Download number_of_intervals 155,347 bp_covered 86,809,593 output_type pseudoreplicated peaks genome_build hg38 cell_type Trophoblast biosample_type Primary cell biosample_term_id UBERON:0000088 tissue_category Embryo encode_experiment_id ENCSR038OIN biological_replicate 2 technical_replicate 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,644,447 downloaded_date 06/12/2022 release_date 11/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF667WLA.bed.gz processed_file_md5 c076295c147a6de3533746d65bdd502a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF667WLA.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF667WLA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF667WLA/@@download/ENCFF667WLA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF667WLA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 14606d00cfa46d240688ddd0e93ebd4e data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens trophoblast cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM753432,GEO:GSM956012;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=trophoblast cell;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=trophoblastic cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000351;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Trophoblast (repl. 2) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR038OIN] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • Spleen NGENCJ5MF6QJFD • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Spleen Histone Show metadata Download track Track metadata identifier NGENCJ5MF6QJFD data_source ENCODE Download track Download number_of_intervals 69,441 bp_covered 119,568,021 output_type pseudoreplicated peaks genome_build hg38 cell_type Spleen biosample_type Tissue biosample_term_id UBERON:0002106 tissue_category Immune Organ encode_experiment_id ENCSR589TCU biological_replicate 2 technical_replicate 2_1, 2_2 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,633,500 downloaded_date 06/12/2022 release_date 08/14/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF736SAI.bed.gz processed_file_md5 43ca8c50c1a5c293696932eb064d53c0 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF736SAI.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF736SAI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF736SAI/@@download/ENCFF736SAI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF736SAI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 41042fe45265ad51c07d11c11d0b770a data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens spleen tissue female adult (53 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2,ENTEx;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE101227;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-11-03;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=spleen;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system,immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002106;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE Spleen (repl. 2) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR589TCU] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • H9 NGENCJ6ORRBBWU • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H9 Histone Show metadata Download track Track metadata identifier NGENCJ6ORRBBWU data_source ENCODE Download track Download number_of_intervals 34,977 bp_covered 27,961,295 output_type pseudoreplicated peaks genome_build hg38 cell_type H9 biosample_type Stem cell biosample_term_id EFO:0003045 tissue_category Embryo encode_experiment_id ENCSR870IUC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 775,458 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF847BAM.bed.gz processed_file_md5 783b953b68220d137d88937e8784e67b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF847BAM.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF847BAM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF847BAM/@@download/ENCFF847BAM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF847BAM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 57b8998b26d9ce6472c5864c790bfc7a data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H9 stably expressing HES5;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSE96434;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-05-20,2015-08-03;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=H9;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003045;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H9 (repl. 1, 2) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR870IUC] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • Chorion NGENCJ7RKTEXIX • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Chorion Histone Show metadata Download track Track metadata identifier NGENCJ7RKTEXIX data_source ENCODE Download track Download number_of_intervals 87,998 bp_covered 99,227,666 output_type pseudoreplicated peaks genome_build hg38 cell_type Chorion biosample_type Tissue biosample_term_id NCIT:C34122 tissue_category Embryo encode_experiment_id ENCSR960AIZ biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,824,666 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF160NKV.bed.gz processed_file_md5 5eb2dadcf044a655477005d53a1a50f1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF160NKV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF160NKV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF160NKV/@@download/ENCFF160NKV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF160NKV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 918371ea2ecfd67b41250a476cf03bf3 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens chorion tissue male embryo (16 weeks);Lab=Joseph Costello, UCSF;ENCODE_internal_tags=RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=embryonic 16 weeks;Reference=PMID:32728046;External_resources=GEO:GSM1127141;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=chorion;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=fetal chorion,embryonic chorion,uterine chorion,chorion (vertebrates),chorion;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0003124;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Chorion (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR960AIZ] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • Endodermal cell NGENCJ7Y33XMCA • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Endodermal cell Histone Show metadata Download track Track metadata identifier NGENCJ7Y33XMCA data_source ENCODE Download track Download number_of_intervals 279,692 bp_covered 138,918,573 output_type pseudoreplicated peaks genome_build hg38 cell_type Endodermal cell biosample_type In vitro differentiated cells biosample_term_id CL:0000223 tissue_category Embryo encode_experiment_id ENCSR110OND biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K36me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 6,825,298 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF837NBB.bed.gz processed_file_md5 f2e6845dc75bbf09baad1dbd7472c923 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF837NBB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF837NBB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF837NBB/@@download/ENCFF837NBB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF837NBB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 083852ac3ac14feb99eceae0ad0d1da3 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens endodermal cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE176647;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-09-06,2020-08-04;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=endodermal cell;ENCODE_cell_slims=embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=endoderm cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000223;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Endodermal cell (repl. 1) Mint-ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR110OND] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • GM06990 NGENCJACRSRETQ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq GM06990 Histone Show metadata Download track Track metadata identifier NGENCJACRSRETQ data_source ENCODE Download track Download number_of_intervals 89,193 bp_covered 29,438,905 output_type pseudoreplicated peaks genome_build hg38 cell_type GM06990 biosample_type Cell line biosample_term_id EFO:0002783 tissue_category Blood encode_experiment_id ENCSR000DQT biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,669,953 downloaded_date 06/12/2022 release_date 10/29/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF097YPX.bed.gz processed_file_md5 5fbf5984ee00b774020910f3a210e7fb wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF097YPX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF097YPX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF097YPX/@@download/ENCFF097YPX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF097YPX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f70cda28c25c69414241d2a8ae50cff8 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens GM06990;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000444,GEO:GSM945213;Project=ENCODE;Award=U54HG004592;Experiment_date_released=2011-02-11,2011-03-17;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=GM06990;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002783;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE GM06990 (repl. 1, 2) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000DQT] [Histone ChIP-seq peaks]
H3K36me3 • SK-N-MC NGENCJAQZDJXT4 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq SK-N-MC Histone Show metadata Download track Track metadata identifier NGENCJAQZDJXT4 data_source ENCODE Download track Download number_of_intervals 97,416 bp_covered 115,064,249 output_type replicated peaks genome_build hg38 cell_type SK-N-MC biosample_type Cell line biosample_term_id EFO:0002860 tissue_category Brain encode_experiment_id ENCSR526PZM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,352,331 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF046ALR.bed.gz processed_file_md5 3a00c3c529f1b5a4914dafb851dce384 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF046ALR.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF046ALR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF046ALR/@@download/ENCFF046ALR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF046ALR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a2bbe29de052f7c8491425723b7c5141 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens SK-N-MC;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=child 14 years;Reference=PMID:32728046;External_resources=GEO:GSE101191;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-01-05,2015-08-03;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-MC;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=SKNMc;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002860;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Child track_name ENCODE SK-N-MC (repl. 1, 2) Histone ChIP-seq H3K36me3 replicated peaks (narrowPeak) [Experiment: ENCSR526PZM] [Life stage: Child] [Histone ChIP-seq peaks]
H3K36me3 • SK-N-SH NGENCJB5L6VU44 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq SK-N-SH Histone Show metadata Download track Track metadata identifier NGENCJB5L6VU44 data_source ENCODE Download track Download number_of_intervals 126,520 bp_covered 135,418,166 output_type pseudoreplicated peaks genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR000FCV biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,953,458 downloaded_date 06/12/2022 release_date 10/28/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF472KLJ.bed.gz processed_file_md5 e93757ea73f942c82ca4a117c0ece7ee wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF472KLJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF472KLJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF472KLJ/@@download/ENCFF472KLJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF472KLJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 bd7cdd6bfbbd2a09758e8903ea4042cb data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens SK-N-SH;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=child 4 years;Reference=PMID:32728046;External_resources=GEO:GSE86673;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2014-07-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=SKNSH;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Child track_name ENCODE SK-N-SH (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000FCV] [Life stage: Child] [Histone ChIP-seq peaks]
H3K36me3 • H9 NGENCJD3YWXISG • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq H9 Histone Show metadata Download track Track metadata identifier NGENCJD3YWXISG data_source ENCODE Download track Download number_of_intervals 284,889 bp_covered 210,131,018 output_type replicated peaks genome_build hg38 cell_type H9 biosample_type Stem cell biosample_term_id EFO:0003045 tissue_category Embryo encode_experiment_id ENCSR723DSG biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1, 2_2 antibody H3K36me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 7,541,734 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF173QEN.bed.gz processed_file_md5 7fecd44482501e76900f095bd2e0e717 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF173QEN.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF173QEN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF173QEN/@@download/ENCFF173QEN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF173QEN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6a10d02eb265e98dc6fe4b9a2859489c data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K36me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE208959;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-11-18,2020-09-08;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H9;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003045;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H9 (repl. 1, 2) Mint-ChIP-seq H3K36me3-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR723DSG] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • Mucosa NGENCJD6HN64CT • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mucosa Histone Show metadata Download track Track metadata identifier NGENCJD6HN64CT data_source ENCODE Download track Download number_of_intervals 18,914 bp_covered 12,817,423 output_type pseudoreplicated peaks genome_build hg38 cell_type Mucosa biosample_type Tissue biosample_term_id UBERON:0000344 tissue_category Digestive encode_experiment_id ENCSR083QRE biological_replicate 1 technical_replicate 1_4 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 406,009 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF403ZBQ.bed.gz processed_file_md5 8ac812a3683fe7ea1df1068144774eb2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF403ZBQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF403ZBQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF403ZBQ/@@download/ENCFF403ZBQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF403ZBQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9e1c61ebf07569371a9a0ad354b71470 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens mucosa of stomach tissue male adult (59 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 59 years;Reference=PMID:32728046;External_resources=GEO:GSM772936;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=mucosa of stomach;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=gastric mucous membrane,stomach mucosa of organ,mucosa of ventriculus,organ mucosa of ventriculus,gastric mucosa,ventriculus mucous membrane,stomach mucous membrane,ventriculus organ mucosa,mucosa of organ of ventriculus,tunica mucosa (gaster),mucous membrane of stomach,mucous membrane of ventriculus,ventriculus mucosa,tunica mucosa gastricae,ventriculus mucosa of organ,stomach mucosa,stomach organ mucosa,mucosa of organ of stomach,organ mucosa of stomach;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001199;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE Mucosa (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR083QRE] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • GM23248 NGENCJE5JXFFGR • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq GM23248 Histone Show metadata Download track Track metadata identifier NGENCJE5JXFFGR data_source ENCODE Download track Download number_of_intervals 74,540 bp_covered 58,580,335 output_type pseudoreplicated peaks genome_build hg38 cell_type GM23248 biosample_type Cell line biosample_term_id EFO:0005723 tissue_category Skin encode_experiment_id ENCSR914AWT biological_replicate 2 technical_replicate 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,771,459 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF799CXE.bed.gz processed_file_md5 b3bb1ca944c4e45c5ebba7317a136b9c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF799CXE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF799CXE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF799CXE/@@download/ENCFF799CXE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF799CXE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 603b0efd832ca5ab8c6e81c754169f60 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens GM23248;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE86769;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-05-03,2015-08-03;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM23248;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=GM23248 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005723;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Adult track_name ENCODE GM23248 (repl. 2) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR914AWT] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • Prostate gland NGENCJEVYGSG7A • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Prostate gland Histone Show metadata Download track Track metadata identifier NGENCJEVYGSG7A data_source ENCODE Download track Download number_of_intervals 12,289 bp_covered 11,253,539 output_type pseudoreplicated peaks genome_build hg38 cell_type Prostate gland biosample_type Tissue biosample_term_id UBERON:0002367 tissue_category Male Reproductive encode_experiment_id ENCSR499FXI biological_replicate 2 technical_replicate 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 263,793 downloaded_date 05/15/2024 release_date 02/01/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF054QYK.bed.gz processed_file_md5 a0e367ac87c9a58e548ecc8e8a010a61 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF054QYK.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF054QYK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF054QYK/@@download/ENCFF054QYK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF054QYK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b0e3e56abac31e20fd6bfaab5495c0f0 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens prostate gland tissue male adult (54 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENTEx;Life_stage_age=adult 54 years;Reference=NR;External_resources=GEO:GSE237912;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2017-08-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=prostate gland;ENCODE_cell_slims=NR;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=male prostate,prostate;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002367;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Adult track_name ENCODE Prostate gland (repl. 2) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR499FXI] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • HUES64 NGENCJFHSYIWXU • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq HUES64 Histone Show metadata Download track Track metadata identifier NGENCJFHSYIWXU data_source ENCODE Download track Download number_of_intervals 103,855 bp_covered 126,993,755 output_type pseudoreplicated peaks genome_build hg38 cell_type HUES64 biosample_type Cell line biosample_term_id EFO:0007089 tissue_category Embryo encode_experiment_id ENCSR426UWA biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,411,038 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF908FZT.bed.gz processed_file_md5 14b33fb0f30aec356a7f71759db8390b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF908FZT.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF908FZT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF908FZT/@@download/ENCFF908FZT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF908FZT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 dbd9d6e2c6508d7a37f277e154a0b0a6 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens HUES64;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM669932,GEO:GSM772751;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HUES64;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007089;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE HUES64 (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR426UWA] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • CD14+ monocyte NGENCJGKGFHPYG • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq CD14+ monocyte Histone Show metadata Download track Track metadata identifier NGENCJGKGFHPYG data_source ENCODE Download track Download number_of_intervals 209,692 bp_covered 257,779,123 output_type pseudoreplicated peaks genome_build hg38 cell_type CD14+ monocyte biosample_type Primary cell biosample_term_id CL:0001054 tissue_category Blood encode_experiment_id ENCSR487WNP biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K36me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 5,599,894 downloaded_date 06/12/2022 release_date 05/07/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF666JZT.bed.gz processed_file_md5 904b8807dcc38b4335dd13b243b77fae wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF666JZT.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF666JZT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF666JZT/@@download/ENCFF666JZT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF666JZT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d47cad43e66f0c2b73f698b1cbbc16a2 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens CD14-positive monocyte;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=YaleImmuneCells;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE177413;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-14,2020-07-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=CD14-positive monocyte;ENCODE_cell_slims=leukocyte,myeloid cell,monocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0001054;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE CD14+ monocyte (repl. 1) Mint-ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR487WNP] [Histone ChIP-seq peaks]
H3K36me3 • BLaER1 NGENCJHQJ7MLSJ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENCJHQJ7MLSJ data_source ENCODE Download track Download number_of_intervals 114,311 bp_covered 224,603,681 output_type replicated peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR687MPF biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,861,555 downloaded_date 05/15/2024 release_date 02/15/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF800GOD.bed.gz processed_file_md5 8b74befd232c26a8d14ab6fbaed5de22 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF800GOD.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF800GOD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF800GOD/@@download/ENCFF800GOD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF800GOD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3e1d85e0f946cbf782b4b8f0089b0149 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 168 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE257672;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 1, 2) Histone ChIP-seq H3K36me3 replicated peaks (narrowPeak) [Experiment: ENCSR687MPF] [Histone ChIP-seq peaks]
H3K36me3 • Keratinocyte NGENCJJAH2V6ZM • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Keratinocyte Histone Show metadata Download track Track metadata identifier NGENCJJAH2V6ZM data_source ENCODE Download track Download number_of_intervals 156,763 bp_covered 217,069,184 output_type pseudoreplicated peaks genome_build hg38 cell_type Keratinocyte biosample_type Primary cell biosample_term_id CL:0000312 tissue_category Skin encode_experiment_id ENCSR377FXG biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,772,626 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF141ZFF.bed.gz processed_file_md5 0c601f1530e2c6d0c8f934c32de7bd1a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF141ZFF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF141ZFF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF141ZFF/@@download/ENCFF141ZFF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF141ZFF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6c37409eb2129ff35ecd2ef1a0a9a2ca data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens foreskin keratinocyte male newborn;Lab=Joseph Costello, UCSF;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM958159;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=foreskin keratinocyte;ENCODE_cell_slims=keratinocyte,epithelial cell;ENCODE_system_slims=reproductive system,integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:1001606;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Newborn track_name ENCODE Keratinocyte (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR377FXG] [Life stage: Newborn] [Histone ChIP-seq peaks]
H3K36me3 • SU-DHL-6 NGENCJJDQQPGQE • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq SU-DHL-6 Histone Show metadata Download track Track metadata identifier NGENCJJDQQPGQE data_source ENCODE Download track Download number_of_intervals 81,219 bp_covered 58,438,956 output_type pseudoreplicated peaks genome_build hg38 cell_type SU-DHL-6 biosample_type Cell line biosample_term_id EFO:0002357 tissue_category Blood encode_experiment_id ENCSR316KHQ biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,986,881 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF318ZUL.bed.gz processed_file_md5 85202e9c577e34e1b40138d851d1c94e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF318ZUL.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF318ZUL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF318ZUL/@@download/ENCFF318ZUL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF318ZUL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 18681ec2641cfd80dc259cffa9ed4fd1 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens SU-DHL-6;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 43 years;Reference=PMID:32728046;External_resources=GEO:GSE86697;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=SU-DHL-6;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=SU-DHL-6;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002357;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE SU-DHL-6 (repl. 1, 2) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR316KHQ] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • Memory B cell NGENCJM5ZLQ2M4 • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Memory B cell Histone Show metadata Download track Track metadata identifier NGENCJM5ZLQ2M4 data_source ENCODE Download track Download number_of_intervals 239,509 bp_covered 91,805,413 output_type pseudoreplicated peaks genome_build hg38 cell_type Memory B cell biosample_type Primary cell biosample_term_id CL:0000787 tissue_category Blood encode_experiment_id ENCSR238WFK biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K36me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 5,567,332 downloaded_date 06/12/2022 release_date 05/06/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF488OSQ.bed.gz processed_file_md5 b59d1210340a94f3f53571e76ff1e74d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF488OSQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF488OSQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF488OSQ/@@download/ENCFF488OSQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF488OSQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ba973526c3588e8fe4c265fff284bf73 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens with multiple sclerosis| IgD-negative memory B cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=YaleImmuneCells;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE176815;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-14,2021-04-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=IgD-negative memory B cell;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=IgD- memory B cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0001053;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE Memory B cell (repl. 1) Mint-ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR238WFK] [Histone ChIP-seq peaks]
H3K36me3 • Stomach NGENCJNK7TZ3ND • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Stomach Histone Show metadata Download track Track metadata identifier NGENCJNK7TZ3ND data_source ENCODE Download track Download number_of_intervals 70,358 bp_covered 185,118,549 output_type replicated peaks genome_build hg38 cell_type Stomach biosample_type Tissue biosample_term_id UBERON:0000945 tissue_category Digestive encode_experiment_id ENCSR166CNR biological_replicate 1, 2 technical_replicate 1_1, 2_2, 2_3 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,785,831 downloaded_date 06/12/2022 release_date 10/31/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF894RZL.bed.gz processed_file_md5 906d73991f854c800d6724016f0e0e6b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF894RZL.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF894RZL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF894RZL/@@download/ENCFF894RZL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF894RZL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 656128a023fece24192f1236ceaf4e1b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens stomach tissue female adult (53 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2,ENTEx;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE101053;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-11-03;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=stomach;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000945;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE Stomach (repl. 1, 2) Histone ChIP-seq H3K36me3 replicated peaks (narrowPeak) [Experiment: ENCSR166CNR] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • Lung NGENCJNXBVAX43 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Lung Histone Show metadata Download track Track metadata identifier NGENCJNXBVAX43 data_source ENCODE Download track Download number_of_intervals 95,774 bp_covered 61,244,649 output_type pseudoreplicated peaks genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id ENCSR100YTJ biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,991,256 downloaded_date 06/12/2022 release_date 08/14/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF713RRL.bed.gz processed_file_md5 f200f5e54d99f853dc8811affc4066cd wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF713RRL.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF713RRL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF713RRL/@@download/ENCFF713RRL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF713RRL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7fdefa4acc593b94ac90ed5509fb28cf data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens lung tissue female embryo (96 days);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=embryonic 96 days;Reference=PMID:32728046;External_resources=GEO:GSM669912;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=lung;ENCODE_cell_slims=NR;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=pulmo;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002048;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Embryonic track_name ENCODE Lung (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR100YTJ] [Life stage: Embryonic] [Histone ChIP-seq peaks]