H3K36me3 • BLaER1 NGENCTNGOTCBJP • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENCTNGOTCBJP data_source ENCODE Download track Download number_of_intervals 51,651 bp_covered 286,567,749 output_type peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR472CMR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed bed3+1 score file_size 436,920 downloaded_date 06/12/2022 release_date 01/27/2022 date_added_to_filer 11/08/2022 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ENCFF211XZC.bed.gz processed_file_md5 3141ddf9ae8950adc2deaef2ff9f263e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ENCFF211XZC.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ENCFF211XZC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF211XZC/@@download/ENCFF211XZC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF211XZC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c6a1a319ae1665a62cafa0859651267e data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 9 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE258809;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=H009H3K36me3_zerone_merged.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED3+1;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 1, 2) Histone ChIP-seq H3K36me3 peaks (bed3+1 score) [Experiment: ENCSR472CMR] [Histone ChIP-seq peaks]
H3K36me3 • CD8+ alpha-beta effector memory cell NGENCTNX62A2VE • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq CD8+ alpha-beta effector memory cell Histone Show metadata Download track Track metadata identifier NGENCTNX62A2VE data_source ENCODE Download track Download number_of_intervals 205,043 bp_covered 165,452,092 output_type pseudoreplicated peaks genome_build hg38 cell_type CD8+ alpha-beta effector memory cell biosample_type Primary cell biosample_term_id CL:0000913 tissue_category Blood encode_experiment_id ENCSR587GGX biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K36me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 5,092,184 downloaded_date 06/12/2022 release_date 03/13/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF189DEO.bed.gz processed_file_md5 318e0fccd82b97d1205bf323c7ae7b92 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF189DEO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF189DEO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF189DEO/@@download/ENCFF189DEO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF189DEO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 57470b72ac5fd624325880abe7f456c6 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens effector memory CD8-positive, alpha-beta T cell male adult (33 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 33 years;Reference=NR;External_resources=GEO:GSE209186;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-04-29,2022-03-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=effector memory CD8-positive, alpha-beta T cell;ENCODE_cell_slims=T cell,CD8+ T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=effector memory CD8-positive, alpha-beta T-lymphocyte,effector CD8-positive, alpha-beta memory T lymphocyte,effector memory CD8-positive, alpha-beta T lymphocyte,effector memory CD8-positive, alpha-beta T-cell,effector CD8-positive, alpha-beta memory T cell,effector CD8-positive, alpha-beta memory T-cell,effector CD8-positive, alpha-beta memory T-lymphocyte;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000913;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE CD8+ alpha-beta effector memory cell (repl. 1) Mint-ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR587GGX] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • HUES64 NGENCTOF6JWAHK • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq HUES64 Histone Show metadata Download track Track metadata identifier NGENCTOF6JWAHK data_source ENCODE Download track Download number_of_intervals 126,713 bp_covered 166,833,912 output_type replicated peaks genome_build hg38 cell_type HUES64 biosample_type Cell line biosample_term_id EFO:0007089 tissue_category Embryo encode_experiment_id ENCSR426UWA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,069,871 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF422CMQ.bed.gz processed_file_md5 d23a483f5e43d6eeb47c50e4a504705d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF422CMQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF422CMQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF422CMQ/@@download/ENCFF422CMQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF422CMQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2d8300be4268811ae0877aad36f4db76 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens HUES64;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM669932,GEO:GSM772751;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HUES64;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007089;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE HUES64 (repl. 1, 2) Histone ChIP-seq H3K36me3 replicated peaks (narrowPeak) [Experiment: ENCSR426UWA] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • Keratinocyte NGENCTQIQMWREQ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Keratinocyte Histone Show metadata Download track Track metadata identifier NGENCTQIQMWREQ data_source ENCODE Download track Download number_of_intervals 63,921 bp_covered 33,618,993 output_type pseudoreplicated peaks genome_build hg38 cell_type Keratinocyte biosample_type Primary cell biosample_term_id CL:0000312 tissue_category Skin encode_experiment_id ENCSR089TWS biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,451,151 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF268KUJ.bed.gz processed_file_md5 3093734efd98b11357b33a54e2198d5f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF268KUJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF268KUJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF268KUJ/@@download/ENCFF268KUJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF268KUJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c91c0a274e44c118c8e4a22aa2e4cbac data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens foreskin keratinocyte male newborn;Lab=Joseph Costello, UCSF;ENCODE_internal_tags=RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM817225;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=foreskin keratinocyte;ENCODE_cell_slims=keratinocyte,epithelial cell;ENCODE_system_slims=reproductive system,integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:1001606;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Newborn track_name ENCODE Keratinocyte (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR089TWS] [Life stage: Newborn] [Histone ChIP-seq peaks]
H3K36me3 • CD8+ alpha-beta naive T cell NGENCTQSOB4WRN • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq CD8+ alpha-beta naive T cell Histone Show metadata Download track Track metadata identifier NGENCTQSOB4WRN data_source ENCODE Download track Download number_of_intervals 258,302 bp_covered 174,838,870 output_type pseudoreplicated peaks genome_build hg38 cell_type CD8+ alpha-beta naive T cell biosample_type Primary cell biosample_term_id CL:0000900 tissue_category Blood encode_experiment_id ENCSR617DUK biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K36me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 6,774,273 downloaded_date 06/12/2022 release_date 03/13/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF925DUC.bed.gz processed_file_md5 ef2c84e1b166cd5f8845dd18b7a2e180 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF925DUC.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF925DUC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF925DUC/@@download/ENCFF925DUC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF925DUC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0a83ac96afaf0d046d3c9e17b6383ee7 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens stimulated activated naive CD8-positive, alpha-beta T cell male adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 33 years;Reference=NR;External_resources=GEO:GSE209228;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-04-29,2022-03-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=stimulated activated naive CD8-positive, alpha-beta T cell;ENCODE_cell_slims=T cell,CD8+ T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0000667;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE CD8+ alpha-beta naive T cell (repl. 1) Mint-ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR617DUK] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • Hepatocyte NGENCTSV5NUXME • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Hepatocyte Histone Show metadata Download track Track metadata identifier NGENCTSV5NUXME data_source ENCODE Download track Download number_of_intervals 4,104 bp_covered 2,338,570 output_type replicated peaks genome_build hg38 cell_type Hepatocyte biosample_type In vitro differentiated cells biosample_term_id CL:0000182 tissue_category Liver encode_experiment_id ENCSR034BEQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 87,698 downloaded_date 06/12/2022 release_date 10/29/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF812BTT.bed.gz processed_file_md5 98600fa09d11370bc7c9544b552e85ae wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF812BTT.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF812BTT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF812BTT/@@download/ENCFF812BTT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF812BTT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 dc6b30de80463d2038299d94b16b16a0 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens hepatocyte originated from H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,SESCC,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSE95891;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-04-27;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=hepatocyte;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000182;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Embryonic track_name ENCODE Hepatocyte (repl. 1, 2) Histone ChIP-seq H3K36me3 replicated peaks (narrowPeak) [Experiment: ENCSR034BEQ] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • Liver NGENCTT4TGMPC2 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Liver Histone Show metadata Download track Track metadata identifier NGENCTT4TGMPC2 data_source ENCODE Download track Download number_of_intervals 116,919 bp_covered 79,373,874 output_type pseudoreplicated peaks genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id ENCSR460RHN biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,431,963 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF404NIK.bed.gz processed_file_md5 1d9d89f8ad071ac6617d1029605b68a8 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF404NIK.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF404NIK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF404NIK/@@download/ENCFF404NIK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF404NIK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1c34f66d1a82fab42c6e6772c993558c data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens liver tissue male adult (31 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 31 years;Reference=NR;External_resources=GEO:GSM669931;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=liver;ENCODE_cell_slims=NR;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002107;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE Liver (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR460RHN] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • HUES48 NGENCTV4NZN3CV • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq HUES48 Histone Show metadata Download track Track metadata identifier NGENCTV4NZN3CV data_source ENCODE Download track Download number_of_intervals 114,744 bp_covered 117,920,660 output_type pseudoreplicated peaks genome_build hg38 cell_type HUES48 biosample_type Cell line biosample_term_id EFO:0007083 tissue_category Embryo encode_experiment_id ENCSR775GZI biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,663,535 downloaded_date 06/12/2022 release_date 11/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF376GOP.bed.gz processed_file_md5 e18806afd8b6ad15c25f07a334ce1167 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF376GOP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF376GOP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF376GOP/@@download/ENCFF376GOP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF376GOP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e796a4463c390aa4fb070e3e18cf72bd data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens HUES48;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM772798,GEO:GSM670039;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HUES48;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007083;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE HUES48 (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR775GZI] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • Neural crest cell NGENCTV7JQ72XF • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Neural crest cell Histone Show metadata Download track Track metadata identifier NGENCTV7JQ72XF data_source ENCODE Download track Download number_of_intervals 261,877 bp_covered 120,403,601 output_type pseudoreplicated peaks genome_build hg38 cell_type Neural crest cell biosample_type In vitro differentiated cells biosample_term_id CL:0011012 tissue_category Embryo encode_experiment_id ENCSR012MIG biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1, 2_2 antibody H3K36me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 7,000,529 downloaded_date 06/12/2022 release_date 06/21/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF355CHN.bed.gz processed_file_md5 6c9407aa0b9d421013da6c8ac0542335 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF355CHN.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF355CHN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF355CHN/@@download/ENCFF355CHN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF355CHN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3a294af2db0b6c1dd23c1d1486ccf78b data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens neural crest cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE187115;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-06-24,2021-04-28;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=neural crest cell;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0011012;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Neural crest cell (repl. 1, 2) Mint-ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR012MIG] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • Spleen NGENCTVHZCW5Y4 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Spleen Histone Show metadata Download track Track metadata identifier NGENCTVHZCW5Y4 data_source ENCODE Download track Download number_of_intervals 72,880 bp_covered 91,910,897 output_type pseudoreplicated peaks genome_build hg38 cell_type Spleen biosample_type Tissue biosample_term_id UBERON:0002106 tissue_category Immune Organ encode_experiment_id ENCSR472BXE biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,568,697 downloaded_date 06/12/2022 release_date 06/23/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF459YKS.bed.gz processed_file_md5 65162dd58c7beb4fa88fed8a7aad6a6b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF459YKS.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF459YKS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF459YKS/@@download/ENCFF459YKS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF459YKS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d6c7bb7507671a617b026aab12f9feae data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens spleen tissue female adult (61 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 61 years;Reference=NR;External_resources=GEO:GSE187926;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-06-24,2021-06-21;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=spleen;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system,immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002106;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE Spleen (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR472BXE] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • OCI-LY7 NGENCTVXDRCQC7 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq OCI-LY7 Histone Show metadata Download track Track metadata identifier NGENCTVXDRCQC7 data_source ENCODE Download track Download number_of_intervals 118,969 bp_covered 123,673,737 output_type pseudoreplicated peaks genome_build hg38 cell_type OCI-LY7 biosample_type Cell line biosample_term_id EFO:0006711 tissue_category Blood encode_experiment_id ENCSR243AIS biological_replicate 2 technical_replicate 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,864,047 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF404FVZ.bed.gz processed_file_md5 ae284bbadfdf65b0beed203e882d5f96 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF404FVZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF404FVZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF404FVZ/@@download/ENCFF404FVZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF404FVZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 cedba7aad42711a08dcdb30b335ada23 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens OCI-LY7;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 48 years;Reference=PMID:32728046;External_resources=GEO:GSE86692;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=OCI-LY7;ENCODE_cell_slims=B cell,cancer cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0006711;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE OCI-LY7 (repl. 2) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR243AIS] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • Lung NGENCTWXAGLKHJ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Lung Histone Show metadata Download track Track metadata identifier NGENCTWXAGLKHJ data_source ENCODE Download track Download number_of_intervals 74,934 bp_covered 139,905,504 output_type pseudoreplicated peaks genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id ENCSR958TSO biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,806,332 downloaded_date 06/12/2022 release_date 06/06/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF665MIC.bed.gz processed_file_md5 df35e559969340dcaf7c2ee867be1db5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF665MIC.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF665MIC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF665MIC/@@download/ENCFF665MIC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF665MIC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 eb914968df6b95694978e4dfe11859f6 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens upper lobe of right lung tissue male adult (60 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 60 years;Reference=NR;External_resources=GEO:GSE209015;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-06-09,2022-06-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=upper lobe of right lung;ENCODE_cell_slims=NR;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=right upper lobe of lung,lobus superior pulmonis dextri,lobus superior (pulmo dexter),right upper lobe,upper lobe of right lung,superior lobe of right lung,right cranial lobe of lung,right lung cranial lobe;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002170;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE Lung (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR958TSO] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • CD4+ CD25+ alpha-beta Treg NGENCTX3KCGOH4 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq CD4+ CD25+ alpha-beta Treg Histone Show metadata Download track Track metadata identifier NGENCTX3KCGOH4 data_source ENCODE Download track Download number_of_intervals 90,332 bp_covered 135,312,460 output_type replicated peaks genome_build hg38 cell_type CD4+ CD25+ alpha-beta Treg biosample_type Primary cell biosample_term_id CL:0000792 tissue_category Blood encode_experiment_id ENCSR435WPP biological_replicate 1, 2 technical_replicate 1_4, 2_2 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,134,116 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF449CFF.bed.gz processed_file_md5 3a610715ef27233b1a9c7ef2ea4442cf wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF449CFF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF449CFF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF449CFF/@@download/ENCFF449CFF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF449CFF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 bf485676c684b4e5cf3498fabae52b33 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM772945,GEO:GSM997230;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=false;ENCODE_biosample_term_name=CD4-positive, CD25-positive, alpha-beta regulatory T cell;ENCODE_cell_slims=T cell,leukocyte,CD4+ T cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=CD4-positive, CD25-positive, alpha-beta regulatory T-cell,CD4-positive, CD25-positive, alpha-beta regulatory T-lymphocyte,CD4-positive, CD25-positive, alpha-beta regulatory T lymphocyte;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000792;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE CD4+ CD25+ alpha-beta Treg (repl. 1, 2) Histone ChIP-seq H3K36me3 replicated peaks (narrowPeak) [Experiment: ENCSR435WPP] [Histone ChIP-seq peaks]
H3K36me3 • H1-hESC NGENCTYFU4YT5O • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H1-hESC Histone Show metadata Download track Track metadata identifier NGENCTYFU4YT5O data_source ENCODE Download track Download number_of_intervals 61,915 bp_covered 38,381,749 output_type replicated peaks genome_build hg38 cell_type H1-hESC biosample_type Cell line biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000ANB biological_replicate 1, 2 technical_replicate 1_1, 2_2 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,422,969 downloaded_date 05/15/2024 release_date 01/15/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF118PXM.bed.gz processed_file_md5 714fea5a31ef817090a3e6af6291cc06 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF118PXM.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF118PXM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF118PXM/@@download/ENCFF118PXM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF118PXM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a45a3052f3683d8c99be2d52e4677a8d data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM733725,UCSC-ENCODE-hg19:wgEncodeEH000107;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1, 2) Histone ChIP-seq H3K36me3 replicated peaks (narrowPeak) [Experiment: ENCSR000ANB] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • Nephron NGENCTZFYUKPXA • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Nephron Histone Show metadata Download track Track metadata identifier NGENCTZFYUKPXA data_source ENCODE Download track Download number_of_intervals 226,275 bp_covered 69,268,158 output_type pseudoreplicated peaks genome_build hg38 cell_type Nephron biosample_type Organoid biosample_term_id UBERON:0001285 tissue_category Kidney encode_experiment_id ENCSR248DHY biological_replicate 2 technical_replicate 2_1, 2_2 antibody H3K36me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 5,587,014 downloaded_date 06/12/2022 release_date 05/11/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF789RQM.bed.gz processed_file_md5 fd93cb5ba2632ec98ad6e314da6b0cc9 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF789RQM.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF789RQM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF789RQM/@@download/ENCFF789RQM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF789RQM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 54e37df73ff8ad560a9275b84e4a338b data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens nephron organoid, 35 days post differentiation;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE176880;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-18,2020-07-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=nephron;ENCODE_cell_slims=NR;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001285;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Renal life_stage Embryonic track_name ENCODE Nephron (repl. 2) Mint-ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR248DHY] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • NT2/D1 NGENCU2XKF63KA • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq NT2/D1 Histone Show metadata Download track Track metadata identifier NGENCU2XKF63KA data_source ENCODE Download track Download number_of_intervals 141,381 bp_covered 88,979,864 output_type pseudoreplicated peaks genome_build hg38 cell_type NT2/D1 biosample_type Cell line biosample_term_id EFO:0005236 tissue_category Male Reproductive encode_experiment_id ENCSR000EXB biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,868,544 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF814SXS.bed.gz processed_file_md5 7ade1189e4f4ca0fddbfcab0cc2c8144 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF814SXS.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF814SXS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF814SXS/@@download/ENCFF814SXS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF814SXS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 acbfc0f01f0004dfe2ec38cf6594ba37 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens NT2/D1;Lab=Peggy Farnham, USC;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=unknown 22 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000915,GEO:GSM788081;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-05-19,2011-10-29;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=NT2/D1;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=NT2/D1 cell,NTERA-2 cl.D1 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005236;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Unknown track_name ENCODE NT2/D1 (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000EXB] [Histone ChIP-seq peaks]
H3K36me3 • Brain NGENCU46JEI7H2 • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Brain Histone Show metadata Download track Track metadata identifier NGENCU46JEI7H2 data_source ENCODE Download track Download number_of_intervals 263,053 bp_covered 286,936,182 output_type pseudoreplicated peaks genome_build hg38 cell_type Brain biosample_type Organoid biosample_term_id UBERON:0000955 tissue_category Brain encode_experiment_id ENCSR300LXM biological_replicate 1, 2, 3 technical_replicate 1_1, 1_2, 2_1, 2_2, 3_1, 3_2 antibody H3K36me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 7,620,516 downloaded_date 06/12/2022 release_date 05/11/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF826HQQ.bed.gz processed_file_md5 0783a56d4e4393f4016af23a108de437 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF826HQQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF826HQQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF826HQQ/@@download/ENCFF826HQQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF826HQQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e09a307fae28c7485b5ef58f1e16f430 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens brain organoid, 90 days post differentiation;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE177083;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-24,2020-07-06;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=brain;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000955;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Embryonic track_name ENCODE Brain (repl. 1, 2, 3) Mint-ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR300LXM] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • Neuronal stem cell NGENCU4L5CCHVV • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Neuronal stem cell Histone Show metadata Download track Track metadata identifier NGENCU4L5CCHVV data_source ENCODE Download track Download number_of_intervals 78,080 bp_covered 34,893,823 output_type pseudoreplicated peaks genome_build hg38 cell_type Neuronal stem cell biosample_type In vitro differentiated cells biosample_term_id CL:0000047 tissue_category Embryo encode_experiment_id ENCSR256ESY biological_replicate 2 technical_replicate 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,673,106 downloaded_date 06/12/2022 release_date 11/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF521QWV.bed.gz processed_file_md5 dd40026652970b148fed5719050b06a4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF521QWV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF521QWV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF521QWV/@@download/ENCFF521QWV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF521QWV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9b23ceb6344ae86965e89156e02fcca4 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens neuronal stem cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM818034,GEO:GSM818035;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=neuronal stem cell;ENCODE_cell_slims=stem cell,neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NSC,neuronal stem cell,neural stem cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000047;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Neuronal stem cell (repl. 2) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR256ESY] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • H9 NGENCU5O5JYAAZ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H9 Histone Show metadata Download track Track metadata identifier NGENCU5O5JYAAZ data_source ENCODE Download track Download number_of_intervals 33,625 bp_covered 28,235,228 output_type pseudoreplicated peaks genome_build hg38 cell_type H9 biosample_type Stem cell biosample_term_id EFO:0003045 tissue_category Embryo encode_experiment_id ENCSR870IUC biological_replicate 2 technical_replicate 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 734,494 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF659SLP.bed.gz processed_file_md5 7e987374963bbb82b4759809d624fbcf wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF659SLP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF659SLP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF659SLP/@@download/ENCFF659SLP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF659SLP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4b50d728ad2d3661b46480ece806d73b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H9 stably expressing HES5;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSE96434;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-05-20,2015-08-03;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H9;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003045;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H9 (repl. 2) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR870IUC] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • iPS-20b NGENCU7BMB6NF4 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq iPS-20b Histone Show metadata Download track Track metadata identifier NGENCU7BMB6NF4 data_source ENCODE Download track Download number_of_intervals 100,557 bp_covered 150,357,257 output_type replicated peaks genome_build hg38 cell_type iPS-20b biosample_type Cell line biosample_term_id EFO:0007108 tissue_category iPSC encode_experiment_id ENCSR499WAQ biological_replicate 1, 2 technical_replicate 1_4, 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,450,135 downloaded_date 06/12/2022 release_date 11/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF793RIV.bed.gz processed_file_md5 aec7382c535d20260e7b195e34d6c3ba wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF793RIV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF793RIV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF793RIV/@@download/ENCFF793RIV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF793RIV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b3b3d8361a632f6700a039465abbfe4e data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens iPS-20b;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 55 years;Reference=PMID:32728046;External_resources=GEO:GSM772846,GEO:GSM537704;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=iPS-20b;ENCODE_cell_slims=induced pluripotent stem cell,stem cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007108;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Stem Cell life_stage Adult track_name ENCODE iPS-20b (repl. 1, 2) Histone ChIP-seq H3K36me3 replicated peaks (narrowPeak) [Experiment: ENCSR499WAQ] [Life stage: Adult] [Histone ChIP-seq peaks]