H3K36me3 • H9 NGENCXDNOXW76R • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H9 Histone Show metadata Download track Track metadata identifier NGENCXDNOXW76R data_source ENCODE Download track Download number_of_intervals 100,303 bp_covered 38,557,854 output_type pseudoreplicated peaks genome_build hg38 cell_type H9 biosample_type Stem cell biosample_term_id EFO:0003045 tissue_category Embryo encode_experiment_id ENCSR324UNL biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,084,372 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF699ZWQ.bed.gz processed_file_md5 91dd720eceb1dde5e2b05350eb601ede wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF699ZWQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF699ZWQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF699ZWQ/@@download/ENCFF699ZWQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF699ZWQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 28b0211667a2233c0ad296dc3a033b42 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H9;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSM605310,GEO:GSM667623;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H9;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003045;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H9 (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR324UNL] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • type B pancreatic cell NGENCXE56NGNV7 • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq type B pancreatic cell Histone Show metadata Download track Track metadata identifier NGENCXE56NGNV7 data_source ENCODE Download track Download number_of_intervals 209,847 bp_covered 125,086,651 output_type pseudoreplicated peaks genome_build hg38 cell_type type B pancreatic cell biosample_type In vitro differentiated cells biosample_term_id CL:0000169 tissue_category Pancreas encode_experiment_id ENCSR697NWN biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1, 2_2 antibody H3K36me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 5,623,457 downloaded_date 06/12/2022 release_date 06/21/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF473VBW.bed.gz processed_file_md5 db4ef8680a6f1686942916672d93e9da wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF473VBW.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF473VBW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF473VBW/@@download/ENCFF473VBW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF473VBW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 55e42629a6b5af868e96cf719445dc1e data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens type B pancreatic cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE187679;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-06-24,2021-04-28;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=type B pancreatic cell;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=endocrine system;ENCODE_biosample_term_synonyms=pancreatic B-cell,B-cell of pancreatic islet,pancreatic islet core,pancreatic B cell,type B enteroendocrine cell,beta cell of pancreatic islet,insulin-secreting cell,pancreatic beta cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000169;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Endocrine life_stage Embryonic track_name ENCODE type B pancreatic cell (repl. 1, 2) Mint-ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR697NWN] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • HCT116 NGENCXET3Q4W7C • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq HCT116 Histone Show metadata Download track Track metadata identifier NGENCXET3Q4W7C data_source ENCODE Download track Download number_of_intervals 101,596 bp_covered 204,609,786 output_type pseudoreplicated peaks genome_build hg38 cell_type HCT116 biosample_type Cell line biosample_term_id EFO:0002824 tissue_category Digestive encode_experiment_id ENCSR276REC biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K36me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 2,837,384 downloaded_date 07/10/2025 release_date 03/13/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF809SRL.bed.gz processed_file_md5 61fccebc81da278101f03243b56026bc wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF809SRL.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF809SRL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF809SRL/@@download/ENCFF809SRL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF809SRL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 30c29c2717f9642b3b78a9b34bb04612 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens CDK7;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=Degron;Life_stage_age=adult 48 years;Reference=NR;External_resources=GEO:GSE209430;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-03-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HCT116;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=HCT-116 cell,HCT116 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002824;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE HCT116 (repl. 1) Mint-ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR276REC] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • Sigmoid colon NGENCXEWLZ4RYR • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Sigmoid colon Histone Show metadata Download track Track metadata identifier NGENCXEWLZ4RYR data_source ENCODE Download track Download number_of_intervals 59,233 bp_covered 59,099,568 output_type pseudoreplicated peaks genome_build hg38 cell_type Sigmoid colon biosample_type Tissue biosample_term_id UBERON:0001159 tissue_category Digestive encode_experiment_id ENCSR333HMT biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,385,297 downloaded_date 06/12/2022 release_date 09/22/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF122ZZM.bed.gz processed_file_md5 6c60a233a68964c98868ce84b0d539a7 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF122ZZM.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF122ZZM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF122ZZM/@@download/ENCFF122ZZM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF122ZZM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d32075dfa999bbcc088cd74942992732 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens sigmoid colon tissue male adult (54 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx;Life_stage_age=adult 54 years;Reference=NR;External_resources=GEO:GSE142954;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2019-08-01,2019-02-08;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=sigmoid colon;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001159;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE Sigmoid colon (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR333HMT] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • CD8+ alpha-beta naive T cell NGENCXF7PV2G4E • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq CD8+ alpha-beta naive T cell Histone Show metadata Download track Track metadata identifier NGENCXF7PV2G4E data_source ENCODE Download track Download number_of_intervals 307,180 bp_covered 157,136,290 output_type pseudoreplicated peaks genome_build hg38 cell_type CD8+ alpha-beta naive T cell biosample_type Primary cell biosample_term_id CL:0000900 tissue_category Blood encode_experiment_id ENCSR012DUX biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K36me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 7,917,704 downloaded_date 06/12/2022 release_date 06/18/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF707TVP.bed.gz processed_file_md5 9b9c12c843d7c2e5327591c95043deb6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF707TVP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF707TVP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF707TVP/@@download/ENCFF707TVP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF707TVP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 aebc3a4238e07af5fefef6c82a6d9c35 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE187109;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-06-24;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=activated naive CD8-positive, alpha-beta T cell;ENCODE_cell_slims=T cell,CD8+ T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0000502;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE CD8+ alpha-beta naive T cell (repl. 1) Mint-ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR012DUX] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • Prostate gland NGENCXHUVID6HN • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Prostate gland Histone Show metadata Download track Track metadata identifier NGENCXHUVID6HN data_source ENCODE Download track Download number_of_intervals 8,056 bp_covered 4,635,207 output_type pseudoreplicated peaks genome_build hg38 cell_type Prostate gland biosample_type Tissue biosample_term_id UBERON:0002367 tissue_category Male Reproductive encode_experiment_id ENCSR768PFZ biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1, 2_2 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 167,034 downloaded_date 06/12/2022 release_date 09/23/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF892TJX.bed.gz processed_file_md5 deb088ab2112519c435fb25a6053aa7c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF892TJX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF892TJX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF892TJX/@@download/ENCFF892TJX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF892TJX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 57ca87beb33bfab594515799c9261d2d data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens prostate gland tissue male adult (37 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx;Life_stage_age=adult 37 years;Reference=NR;External_resources=GEO:GSE139742;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2019-09-11,2019-09-06;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=prostate gland;ENCODE_cell_slims=NR;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=male prostate,prostate;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002367;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Adult track_name ENCODE Prostate gland (repl. 1, 2) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR768PFZ] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • Mesodermal cell NGENCXJQ72MXK2 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mesodermal cell Histone Show metadata Download track Track metadata identifier NGENCXJQ72MXK2 data_source ENCODE Download track Download number_of_intervals 166,915 bp_covered 182,967,316 output_type replicated peaks genome_build hg38 cell_type Mesodermal cell biosample_type In vitro differentiated cells biosample_term_id CL:0000222 tissue_category Embryo encode_experiment_id ENCSR100LWU biological_replicate 1, 2 technical_replicate 1_4, 2_2 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,630,465 downloaded_date 06/12/2022 release_date 03/18/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF680RYZ.bed.gz processed_file_md5 cc2019196d34cd94f2c95259520d933b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF680RYZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF680RYZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF680RYZ/@@download/ENCFF680RYZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF680RYZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 99890d1f4f33a53ea8b2f9e9a6fa46a8 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens mesodermal cell originated from HUES64;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM916068,GEO:GSM916072;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=false;ENCODE_biosample_term_name=mesodermal cell;ENCODE_cell_slims=embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=mesoblast,mesoderm cell;Analysis_title=ENCODE4 v1.7.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000222;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Mesodermal cell (repl. 1, 2) Histone ChIP-seq H3K36me3 replicated peaks (narrowPeak) [Experiment: ENCSR100LWU] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • K562 NGENCXLWOPYISH • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq K562 Histone Show metadata Download track Track metadata identifier NGENCXLWOPYISH data_source ENCODE Download track Download number_of_intervals 161,448 bp_covered 159,485,304 output_type pseudoreplicated peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000AKR biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1, 3_2 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,957,502 downloaded_date 05/15/2024 release_date 06/16/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF754AKB.bed.gz processed_file_md5 1232d7418698463b9389fd21e4e499d6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF754AKB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF754AKB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF754AKB/@@download/ENCFF754AKB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF754AKB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 672e1958af3f201a2d4510a1d50d4623 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000045,GEO:GSM733714;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2, 3) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AKR] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • Layer - hippocampus NGENCXMXDJ54D2 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Layer - hippocampus Histone Show metadata Download track Track metadata identifier NGENCXMXDJ54D2 data_source ENCODE Download track Download number_of_intervals 71,747 bp_covered 64,285,021 output_type pseudoreplicated peaks genome_build hg38 cell_type Layer - hippocampus biosample_type Tissue biosample_term_id UBERON:0002305 tissue_category Brain encode_experiment_id ENCSR691IZA biological_replicate 1 technical_replicate 1_2 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,544,241 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF249WVG.bed.gz processed_file_md5 7e0f08044809679ce4fe09b265e4d029 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF249WVG.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF249WVG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF249WVG/@@download/ENCFF249WVG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF249WVG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 86a6e549fd6401b5763c5dacfcbe27b2 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens layer of hippocampus tissue male adult (73 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=adult 73 years;Reference=PMID:32728046;External_resources=GEO:GSM916041;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=layer of hippocampus;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=cytoarchitectural fields of hippocampal formation,hippocampus layer;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002305;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Layer - hippocampus (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR691IZA] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • BLaER1 NGENCXODNF6BQ5 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENCXODNF6BQ5 data_source ENCODE Download track Download number_of_intervals 207,139 bp_covered 248,848,588 output_type peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR612WDG biological_replicate 2 technical_replicate 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 4,614,519 downloaded_date 06/12/2022 release_date 01/27/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF537SUY.bed.gz processed_file_md5 0e43b5d7bc2cfaa87ba0068b58de73a3 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF537SUY.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF537SUY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF537SUY/@@download/ENCFF537SUY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF537SUY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ccf7bcab3694d62e26d2cfadfa5ab9d0 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 6 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE258173;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=H006H3K36me3X2_peaks.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 2) Histone ChIP-seq H3K36me3 peaks (narrowPeak) [Experiment: ENCSR612WDG] [Histone ChIP-seq peaks]
H3K36me3 • Fibroblast NGENCXPKA3XMQA • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Fibroblast Histone Show metadata Download track Track metadata identifier NGENCXPKA3XMQA data_source ENCODE Download track Download number_of_intervals 192,150 bp_covered 140,025,660 output_type pseudoreplicated peaks genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id ENCSR621EXD biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 4,266,436 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF735PFE.bed.gz processed_file_md5 abaeb5d31b60d0b85a4ca1a2016222d1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF735PFE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF735PFE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF735PFE/@@download/ENCFF735PFE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF735PFE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6bfb618ed4e772509027f2e42616a7ca data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens foreskin fibroblast male newborn;Lab=Joseph Costello, UCSF;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM817241;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=foreskin fibroblast;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=reproductive system,integumental system;ENCODE_biosample_term_synonyms=BJ fibroblast;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:1001608;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Newborn track_name ENCODE Fibroblast (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR621EXD] [Life stage: Newborn] [Histone ChIP-seq peaks]
H3K36me3 • CD4+ alpha-beta effector memory cell NGENCXQYCZSIPB • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq CD4+ alpha-beta effector memory cell Histone Show metadata Download track Track metadata identifier NGENCXQYCZSIPB data_source ENCODE Download track Download number_of_intervals 43,790 bp_covered 18,638,297 output_type pseudoreplicated peaks genome_build hg38 cell_type CD4+ alpha-beta effector memory cell biosample_type Primary cell biosample_term_id CL:0000905 tissue_category Blood encode_experiment_id ENCSR610IIJ biological_replicate 1 technical_replicate 1_4 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 933,096 downloaded_date 06/12/2022 release_date 01/29/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF738BGA.bed.gz processed_file_md5 654c9e4b48e7a76f0543a6a26a67966a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF738BGA.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF738BGA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF738BGA/@@download/ENCFF738BGA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF738BGA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6e5e5683652bcc5a5f1437b4c0228abf data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens effector memory CD4-positive, alpha-beta T cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM772981,GEO:GSM997264;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=false;ENCODE_biosample_term_name=effector memory CD4-positive, alpha-beta T cell;ENCODE_cell_slims=T cell,leukocyte,CD4+ T cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=effector memory CD4-positive, alpha-beta T lymphocyte,effector memory CD4-positive, alpha-beta T-cell,effector CD4-positive, alpha-beta memory T-cell,effector CD4-positive, alpha-beta memory T lymphocyte,effector CD4-positive, alpha-beta memory T cell,effector CD4-positive, alpha-beta memory T-lymphocyte,effector memory CD4-positive, alpha-beta T-lymphocyte;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000905;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE CD4+ alpha-beta effector memory cell (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR610IIJ] [Histone ChIP-seq peaks]
H3K36me3 • Thyroid gland NGENCXSUXDRY5K • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Thyroid gland Histone Show metadata Download track Track metadata identifier NGENCXSUXDRY5K data_source ENCODE Download track Download number_of_intervals 716 bp_covered 227,219 output_type pseudoreplicated peaks genome_build hg38 cell_type Thyroid gland biosample_type Tissue biosample_term_id UBERON:0002046 tissue_category Endocrine encode_experiment_id ENCSR908DTR biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 13,429 downloaded_date 06/12/2022 release_date 10/29/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF420KMP.bed.gz processed_file_md5 8039313b3d0890cfd37bea13133c41af wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF420KMP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF420KMP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF420KMP/@@download/ENCFF420KMP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF420KMP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d58bcc2c30db705bddc98490e2cd044d data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens thyroid gland tissue male adult (54 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2,ENTEx;Life_stage_age=adult 54 years;Reference=PMID:32728046;External_resources=GEO:GSE101366;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-05-23;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=thyroid gland;ENCODE_cell_slims=NR;ENCODE_system_slims=endocrine system;ENCODE_biosample_term_synonyms=thyroid;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002046;is_hg38_lifted=no;narrowPeak_filter=qValueRaw system_category Endocrine life_stage Adult track_name ENCODE Thyroid gland (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR908DTR] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • Tibial artery NGENCXTFSNCBPT • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Tibial artery Histone Show metadata Download track Track metadata identifier NGENCXTFSNCBPT data_source ENCODE Download track Download number_of_intervals 94,896 bp_covered 177,569,342 output_type pseudoreplicated peaks genome_build hg38 cell_type Tibial artery biosample_type Tissue biosample_term_id UBERON:0007610 tissue_category Blood Vessel encode_experiment_id ENCSR360UUM biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,322,306 downloaded_date 06/12/2022 release_date 09/23/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF350DAP.bed.gz processed_file_md5 8492a0dc5b23e60d633973a948544319 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF350DAP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF350DAP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF350DAP/@@download/ENCFF350DAP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF350DAP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b63c4179e1b06a3db9daa98f63f0f200 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens tibial artery tissue female adult (51 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx;Life_stage_age=adult 51 years;Reference=NR;External_resources=GEO:GSE167684;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2019-02-12,2018-12-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=tibial artery;ENCODE_cell_slims=NR;ENCODE_system_slims=circulatory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0007610;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Tibial artery (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR360UUM] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • BLaER1 NGENCXVPVWWB3T • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENCXVPVWWB3T data_source ENCODE Download track Download number_of_intervals 154,454 bp_covered 242,743,718 output_type pseudoreplicated peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR797ELD biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,834,976 downloaded_date 05/15/2024 release_date 02/15/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF410ZYN.bed.gz processed_file_md5 093c4ad2a6c8a5c9cf7494a1bc0fe011 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF410ZYN.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF410ZYN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF410ZYN/@@download/ENCFF410ZYN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF410ZYN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c644779aca74d505fd4e7c84aee759de data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 48 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE258764;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 1, 2) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR797ELD] [Histone ChIP-seq peaks]
H3K36me3 • Myotube NGENCXY4AFU5ZG • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Myotube Histone Show metadata Download track Track metadata identifier NGENCXY4AFU5ZG data_source ENCODE Download track Download number_of_intervals 49,399 bp_covered 19,662,205 output_type pseudoreplicated peaks genome_build hg38 cell_type Myotube biosample_type In vitro differentiated cells biosample_term_id CL:0002372 tissue_category Skeletal Muscle encode_experiment_id ENCSR000ANW biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,068,979 downloaded_date 06/12/2022 release_date 10/29/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF607HKA.bed.gz processed_file_md5 f5623b607855e8fc6837f25f89e72abf wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF607HKA.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF607HKA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF607HKA/@@download/ENCFF607HKA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF607HKA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 96613f0b540e75886a26c7068b4a6be3 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens myotube originated from skeletal muscle myoblast;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 22 years;Reference=PMID:32728046;External_resources=GEO:GSM733717,UCSC-ENCODE-hg19:wgEncodeEH001004;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=myotube;ENCODE_cell_slims=NR;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=myotubule,single cell sarcomere;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002372;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Muscular life_stage Adult track_name ENCODE Myotube (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ANW] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • HEK293 NGENCXZELVFR7I • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq HEK293 Histone Show metadata Download track Track metadata identifier NGENCXZELVFR7I data_source ENCODE Download track Download number_of_intervals 29,164 bp_covered 36,380,819 output_type replicated peaks genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR000FCK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 659,361 downloaded_date 06/12/2022 release_date 10/28/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF952DHM.bed.gz processed_file_md5 5b12694d219903f7a8fbbae6e38fe076 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF952DHM.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF952DHM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF952DHM/@@download/ENCFF952DHM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF952DHM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 62b67ebc1ac0dbcb8110db3239615896 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSE174870;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2014-07-07,2011-10-29;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HEK293;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=human embryonic kidney cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Renal life_stage Embryonic track_name ENCODE HEK293 (repl. 1, 2) Histone ChIP-seq H3K36me3 replicated peaks (narrowPeak) [Experiment: ENCSR000FCK] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • CD4+ CD25+ alpha-beta Treg NGENCXZYHZ3CVT • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq CD4+ CD25+ alpha-beta Treg Histone Show metadata Download track Track metadata identifier NGENCXZYHZ3CVT data_source ENCODE Download track Download number_of_intervals 290,432 bp_covered 103,169,401 output_type pseudoreplicated peaks genome_build hg38 cell_type CD4+ CD25+ alpha-beta Treg biosample_type Primary cell biosample_term_id CL:0000792 tissue_category Blood encode_experiment_id ENCSR555OIX biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K36me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 6,725,369 downloaded_date 06/12/2022 release_date 03/31/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF533LUA.bed.gz processed_file_md5 51ff7345eaef0896d37293b8c6ae4282 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF533LUA.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF533LUA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF533LUA/@@download/ENCFF533LUA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF533LUA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8a2f9e2efc7686cbff97ae8b12176c7a data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult (42 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 42 years;Reference=NR;External_resources=GEO:GSE208982;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-04-27,2021-06-24;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=CD4-positive, CD25-positive, alpha-beta regulatory T cell;ENCODE_cell_slims=T cell,leukocyte,CD4+ T cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=CD4-positive, CD25-positive, alpha-beta regulatory T-cell,CD4-positive, CD25-positive, alpha-beta regulatory T-lymphocyte,CD4-positive, CD25-positive, alpha-beta regulatory T lymphocyte;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000792;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE CD4+ CD25+ alpha-beta Treg (repl. 1) Mint-ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR555OIX] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K36me3 • Brain NGENCY4GBIUMKN • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Brain Histone Show metadata Download track Track metadata identifier NGENCY4GBIUMKN data_source ENCODE Download track Download number_of_intervals 122,809 bp_covered 91,275,166 output_type pseudoreplicated peaks genome_build hg38 cell_type Brain biosample_type Tissue biosample_term_id UBERON:0000955 tissue_category Brain encode_experiment_id ENCSR869WSC biological_replicate 1 technical_replicate 1_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,348,685 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF832NHE.bed.gz processed_file_md5 136c6d9ad2850de6cece8f4112df0366 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF832NHE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF832NHE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF832NHE/@@download/ENCFF832NHE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF832NHE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 38a48605727b30e8d81cff117499022c data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens brain tissue female embryo (17 weeks);Lab=Joseph Costello, UCSF;ENCODE_internal_tags=RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=embryonic 17 weeks;Reference=PMID:32728046;External_resources=GEO:GSM806946,GEO:GSM806938;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=false;ENCODE_biosample_term_name=brain;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000955;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Embryonic track_name ENCODE Brain (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR869WSC] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K36me3 • B cell NGENCY7FKTFCWF • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq B cell Histone Show metadata Download track Track metadata identifier NGENCY7FKTFCWF data_source ENCODE Download track Download number_of_intervals 44,901 bp_covered 27,986,437 output_type pseudoreplicated peaks genome_build hg38 cell_type B cell biosample_type Primary cell biosample_term_id CL:0000236 tissue_category Immune encode_experiment_id ENCSR424XBP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K36me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,004,860 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF778AUE.bed.gz processed_file_md5 3b4a3a6b918c13bb2ffa6cd0b405fcfb wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF778AUE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF778AUE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF778AUE/@@download/ENCFF778AUE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF778AUE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 086f283fbe724057ad5ce3ba7806913b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens B cell female adult (27 years) and female adult (43 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSE96165;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-01-06,2012-08-06,2016-11-07;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=B cell;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=B-cell,B lymphocyte,B-lymphocyte;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000236;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE B cell (repl. 1, 2) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR424XBP] [Life stage: Adult] [Histone ChIP-seq peaks]