BJ NGADBKUUKATGRW • ATACdb v1.03 ATAC-seq BJ TFBS Show metadata identifier NGADBKUUKATGRW data_source ATACdb_v1.03 Download track Download number_of_intervals 301,349 bp_covered 4,107,943 output_type transcription factor binding sites genome_build hg38 cell_type BJ biosample_type Cell line biosample_term_id EFO:0002779 tissue_category Connective Tissue encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 10,725,415 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1089_hg38_motif_binding_sites.bed.gz processed_file_md5 a3fa6325e799aa9349b87903121053f9 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1089_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1089_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1089;Biosample_Type=Cell Line;Tissue_Type=Skin;Biosample_Name=BJ;Cancer_Type=Normal;Region_Number=87464;Length=59104.039 kb;GEO_SRA=GSM2174876;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILE system_category Skeletal life_stage Unknown track_name ATACdb_v1.03 BJ ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
CD8+ T cell NGADBKV4WXB2DK • ATACdb v1.03 ATAC-seq CD8+ T cell TFBS Show metadata identifier NGADBKV4WXB2DK data_source ATACdb_v1.03 Download track Download number_of_intervals 186,404 bp_covered 2,534,179 output_type transcription factor binding sites genome_build hg38 cell_type CD8+ T cell biosample_type Primary cell biosample_term_id CL:0001050 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 6,192,619 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1023_hg38_motif_binding_sites.bed.gz processed_file_md5 63b0e60d6a325fe464614f4b58f87f1f wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1023_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1023_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1023;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD8 T cell;Cancer_Type=Melanoma;Region_Number=37081;Length=26344.259 kb;GEO_SRA=SRR4568593;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 CD8+ T cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
EBV-transformed lymphocytes NGADBKVASROJUD • ATACdb v1.03 ATAC-seq EBV-transformed lymphocytes TFBS Show metadata identifier NGADBKVASROJUD data_source ATACdb_v1.03 Download track Download number_of_intervals 35,232 bp_covered 471,743 output_type transcription factor binding sites genome_build hg38 cell_type EBV-transformed lymphocytes biosample_type Induced pluripotent stem cell line biosample_term_id EFO:0022546 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 1,199,044 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0765_hg38_motif_binding_sites.bed.gz processed_file_md5 7b3ceaf2f772027d229ac32bda4f9960 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0765_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0765_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0765;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Blood;Biosample_Name=LCL;Cancer_Type=Other;Region_Number=11248;Length=3133.435 kb;GEO_SRA=SRR6412844;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.l system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 EBV-transformed lymphocytes ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Stromal cell NGADBKVKQBNOT3 • ATACdb v1.03 ATAC-seq Stromal cell Accessible chromatin Show metadata identifier NGADBKVKQBNOT3 data_source ATACdb_v1.03 Download track Download number_of_intervals 55,201 bp_covered 29,578,049 output_type accessible chromatin region genome_build hg38 cell_type Stromal cell biosample_type Not applicable biosample_term_id CL:0000499 tissue_category Female Reproductive encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,768,110 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0698_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 5199ec5d695a0dc1e51bc4da7eeeb54f wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0698_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0698_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0698.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0698.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 903b19fc9abf3376bbf0e701efc74ba3 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0698;Biosample_Type=Other;Tissue_Type=Other;Biosample_Name=Endometrial stromal cell;Cancer_Type=Normal;Region_Number=55231;Length=29597.364 kb;GEO_SRA=SRR6148318;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwa system_category Reproductive life_stage Unknown track_name ATACdb_v1.03 Stromal cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Fibroblast NGADBKVXMDP2AM • ATACdb v1.03 ATAC-seq Fibroblast TFBS Show metadata identifier NGADBKVXMDP2AM data_source ATACdb_v1.03 Download track Download number_of_intervals 107,918 bp_covered 1,484,552 output_type transcription factor binding sites genome_build hg38 cell_type Fibroblast biosample_type Cell line biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 4,065,452 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0144_hg38_motif_binding_sites.bed.gz processed_file_md5 327821576aa0e8ea88ea766ff2bf3aea wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0144_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0144_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0144;Biosample_Type=Cell Line;Tissue_Type=Skin;Biosample_Name=Fibroblast;Cancer_Type=Normal;Region_Number=39119;Length=22004.086 kb;GEO_SRA=SRR6726092;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/G system_category Integumentary life_stage Unknown track_name ATACdb_v1.03 Fibroblast ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
CD4+ NGADBKWHIWSYZT • ATACdb v1.03 ATAC-seq CD4+ Accessible chromatin Show metadata identifier NGADBKWHIWSYZT data_source ATACdb_v1.03 Download track Download number_of_intervals 5,819 bp_covered 1,921,333 output_type accessible chromatin region genome_build hg38 cell_type CD4+ biosample_type Primary cell biosample_term_id CL:0000492 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 183,090 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1245_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 1fd26e763aa0b83842e1303fa23abafe wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1245_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1245_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1245.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1245.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 2aff5c8c3171ca93c639f0109160221f data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1245;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Normal;Region_Number=5835;Length=1924.301 kb;GEO_SRA=SRR1556324;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.or system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
THP-1 NGADBKWOY67RYY • ATACdb v1.03 ATAC-seq THP-1 Accessible chromatin Show metadata identifier NGADBKWOY67RYY data_source ATACdb_v1.03 Download track Download number_of_intervals 43,964 bp_covered 22,355,389 output_type accessible chromatin region genome_build hg38 cell_type THP-1 biosample_type Cell line biosample_term_id EFO:0001253 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,441,651 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1070_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 245e8bf916aeb3afc78450e5a3f176fc wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1070_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1070_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1070.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1070.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 6f4dc0d4f51189808aea439050c52b62 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1070;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=THP-1;Cancer_Type=Other;Region_Number=44029;Length=22389.828 kb;GEO_SRA=SRR5359592;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/F system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 THP-1 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Glioblastoma NGADBKWSILTDZ5 • ATACdb v1.03 ATAC-seq Glioblastoma TFBS Show metadata identifier NGADBKWSILTDZ5 data_source ATACdb_v1.03 Download track Download number_of_intervals 205,839 bp_covered 2,779,854 output_type transcription factor binding sites genome_build hg38 cell_type Glioblastoma biosample_type Stem cell biosample_term_id NCIT:C3058 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 6,781,933 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0141_hg38_motif_binding_sites.bed.gz processed_file_md5 c537bb619631aa51f52365da634db61f wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0141_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0141_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0141;Biosample_Type=Stem Cell;Tissue_Type=Brain;Biosample_Name=Glioblastoma stem cell;Cancer_Type=Glioblastoma;Region_Number=38396;Length=25974.33 kb;GEO_SRA=SRR7642285;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf. system_category Nervous life_stage Unknown track_name ATACdb_v1.03 Glioblastoma ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Memory B cell NGADBKWSLQ3VFX • ATACdb v1.03 ATAC-seq Memory B cell Accessible chromatin Show metadata identifier NGADBKWSLQ3VFX data_source ATACdb_v1.03 Download track Download number_of_intervals 52,597 bp_covered 19,565,207 output_type accessible chromatin region genome_build hg38 cell_type Memory B cell biosample_type Not applicable biosample_term_id CL:0000787 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,692,351 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0284_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 893fb6a4880ac9ca67bd535f33e50151 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0284_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0284_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0284.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0284.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 1adf323b577cc8a1b71810c6c8182580 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0284;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Mem_B;Cancer_Type=Normal;Region_Number=52703;Length=19592.653 kb;GEO_SRA=SRR7650815;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILE system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Memory B cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
HEK293 NGADBKX5S4N2HM • ATACdb v1.03 ATAC-seq HEK293 Accessible chromatin Show metadata identifier NGADBKX5S4N2HM data_source ATACdb_v1.03 Download track Download number_of_intervals 50,319 bp_covered 26,872,813 output_type accessible chromatin region genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,640,279 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0097_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 f807ff09f6ecb6eb5812f2c14955c49a wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0097_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0097_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0097.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0097.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 99bf98a7c8800d6c9d6e38b28231ca06 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0097;Biosample_Type=Cell Line;Tissue_Type=Kidney;Biosample_Name=HEK293;Cancer_Type=Normal;Region_Number=50414;Length=26921.518 kb;GEO_SRA=SRR6418077;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system_category Renal life_stage Unknown track_name ATACdb_v1.03 HEK293 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
H1-hESC NGADBKXBNTOCFN • ATACdb v1.03 ATAC-seq H1-hESC Accessible chromatin Show metadata identifier NGADBKXBNTOCFN data_source ATACdb_v1.03 Download track Download number_of_intervals 72,934 bp_covered 44,347,364 output_type accessible chromatin region genome_build hg38 cell_type H1-hESC biosample_type Cell line biosample_term_id EFO:0003042 tissue_category Stem Cell encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 2,346,348 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1044_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 32d7af889429ae3bf383c0eaafc2abd8 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1044_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1044_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1044.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1044.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 abd6a54a1e7c0b6167e0970c530b5f42 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1044;Biosample_Type=Cell Line;Tissue_Type=Embryo;Biosample_Name=H1;Cancer_Type=Normal;Region_Number=73021;Length=44386.882 kb;GEO_SRA=SRR5007259;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FI system_category Stem Cell life_stage Embryonic track_name ATACdb_v1.03 H1-hESC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic] [Accessible chromatin]
THP-1 NGADBKXS2NOT7M • ATACdb v1.03 ATAC-seq THP-1 TFBS Show metadata identifier NGADBKXS2NOT7M data_source ATACdb_v1.03 Download track Download number_of_intervals 164,106 bp_covered 2,257,717 output_type transcription factor binding sites genome_build hg38 cell_type THP-1 biosample_type Cell line biosample_term_id EFO:0001253 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 5,819,609 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1073_hg38_motif_binding_sites.bed.gz processed_file_md5 01323469d521bca0af02c72733da8dfb wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1073_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1073_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1073;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=THP-1;Cancer_Type=Other;Region_Number=54055;Length=23593.019 kb;GEO_SRA=SRR5359596;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/F system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 THP-1 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
ME-1 NGADBKXXXGA2RR • ATACdb v1.03 ATAC-seq ME-1 Accessible chromatin Show metadata identifier NGADBKXXXGA2RR data_source ATACdb_v1.03 Download track Download number_of_intervals 38,132 bp_covered 12,156,668 output_type accessible chromatin region genome_build hg38 cell_type ME-1 biosample_type Cell line biosample_term_id EFO:0006645 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,227,643 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0616_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 600e7a79710ba01b103b100deba7b4a2 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0616_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0616_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0616.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0616.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 1b53ebb3d8526db5583a94dbb11927da data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0616;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=ME-1;Cancer_Type=Leukemia;Region_Number=38188;Length=12164.034 kb;GEO_SRA=SRR5861514;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 ME-1 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
hESC NGADBKY3TDHLYQ • ATACdb v1.03 ATAC-seq hESC Accessible chromatin Show metadata identifier NGADBKY3TDHLYQ data_source ATACdb_v1.03 Download track Download number_of_intervals 28,812 bp_covered 14,178,935 output_type accessible chromatin region genome_build hg38 cell_type hESC biosample_type Cell line biosample_term_id CL:0002322 tissue_category Stem Cell encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 939,094 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1391_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 43296d83fd322c6453fd7194bdf5f7fe wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1391_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1391_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1391.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1391.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 6d20b183c0a6d8b60044b14e9f129cad data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1391;Biosample_Type=Cell Line;Tissue_Type=Embryo;Biosample_Name=HESC;Cancer_Type=Normal;Region_Number=28893;Length=14243.46 kb;GEO_SRA=SRR6387579;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/F system_category Stem Cell life_stage Embryonic track_name ATACdb_v1.03 hESC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic] [Accessible chromatin]
Primary visual cortex NGADBKY43XVI5R • ATACdb v1.03 ATAC-seq Primary visual cortex TFBS Show metadata identifier NGADBKY43XVI5R data_source ATACdb_v1.03 Download track Download number_of_intervals 87,269 bp_covered 1,153,552 output_type transcription factor binding sites genome_build hg38 cell_type Primary visual cortex biosample_type Not applicable biosample_term_id UBERON:0002436 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 2,760,823 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0455_hg38_motif_binding_sites.bed.gz processed_file_md5 7388558b8636405395fb7df2d3fe6716 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0455_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0455_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0455;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=primary visual cortex;Cancer_Type=Other;Region_Number=16341;Length=9593.83 kb;GEO_SRA=SRR5367716;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab. system_category Nervous life_stage Unknown track_name ATACdb_v1.03 Primary visual cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
CD8+ effector memory T cell NGADBKY4PI6V6W • ATACdb v1.03 ATAC-seq CD8+ effector memory T cell TFBS Show metadata identifier NGADBKY4PI6V6W data_source ATACdb_v1.03 Download track Download number_of_intervals 238,088 bp_covered 3,240,835 output_type transcription factor binding sites genome_build hg38 cell_type CD8+ effector memory T cell biosample_type Not applicable biosample_term_id CL:0000913 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 7,867,991 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0210_hg38_motif_binding_sites.bed.gz processed_file_md5 fbcbc24c9d7ab6760a3081ec00e9fb2d wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0210_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0210_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0210;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Effector_memory_CD8pos_T;Cancer_Type=Normal;Region_Number=45711;Length=33320.526 kb;GEO_SRA=SRR7650740;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwa system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 CD8+ effector memory T cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Skin NGADBKY4Z22NKG • ATACdb v1.03 ATAC-seq Skin Accessible chromatin Show metadata identifier NGADBKY4Z22NKG data_source ATACdb_v1.03 Download track Download number_of_intervals 88,009 bp_covered 37,564,079 output_type accessible chromatin region genome_build hg38 cell_type Skin biosample_type Not applicable biosample_term_id UBERON:0002097 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 2,839,571 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1374_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 83bca78fd430e7fa2dae128fd120efe7 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1374_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1374_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1374.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1374.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 7ace0ccff42af12a70bb26b6cd4fba89 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1374;Biosample_Type=Other;Tissue_Type=Skin;Biosample_Name=Skin;Cancer_Type=Normal;Region_Number=88120;Length=37639.237 kb;GEO_SRA=SRR8558122;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2 system_category Integumentary life_stage Unknown track_name ATACdb_v1.03 Skin ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Hematopoietic stem cell NGADBKYZOC4Q7X • ATACdb v1.03 ATAC-seq Hematopoietic stem cell Accessible chromatin Show metadata identifier NGADBKYZOC4Q7X data_source ATACdb_v1.03 Download track Download number_of_intervals 22,741 bp_covered 12,475,778 output_type accessible chromatin region genome_build hg38 cell_type Hematopoietic stem cell biosample_type Primary cell biosample_term_id CL:0000037 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 758,448 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1181_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 59f6b0961488dd2ba747ef05f90772bc wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1181_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1181_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1181.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1181.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 6285997438d9ab22f22bff2e7a3e9390 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1181;Biosample_Type=Primary Cell;Tissue_Type=Peripheral blood;Biosample_Name=EB-HSPC;Cancer_Type=Normal;Region_Number=22767;Length=12491.288 kb;GEO_SRA=SRR3095972;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanw system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Hematopoietic stem cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
GIST48B NGADBKZFDF5EJJ • ATACdb v1.03 ATAC-seq GIST48B Accessible chromatin Show metadata identifier NGADBKZFDF5EJJ data_source ATACdb_v1.03 Download track Download number_of_intervals 44,054 bp_covered 25,145,891 output_type accessible chromatin region genome_build hg38 cell_type GIST48B biosample_type Cell line biosample_term_id Not available tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,447,182 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0583_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 97a1f54f9876ccbcedf8b30fde9e1bcc wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0583_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0583_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0583.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0583.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 6b212132bb3239ee5214582cea8fd859 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0583;Biosample_Type=Cell Line;Tissue_Type=Gastrointestinal stromal;Biosample_Name=GIST-48B;Cancer_Type=Gastrointestinal stromal tumor;Region_Number=44120;Length=25160.642 kb;GEO_SRA=SRR6048584;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_ackn system_category Digestive life_stage Unknown track_name ATACdb_v1.03 GIST48B ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
iMeLCs NGADBKZHMBMI26 • ATACdb v1.03 ATAC-seq iMeLCs Accessible chromatin Show metadata identifier NGADBKZHMBMI26 data_source ATACdb_v1.03 Download track Download number_of_intervals 64,884 bp_covered 34,653,374 output_type accessible chromatin region genome_build hg38 cell_type iMeLCs biosample_type Stem cell biosample_term_id Not available tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 2,036,688 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0008_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 bf6e5d2f57a2f8ccc2897e195835bd68 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0008_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0008_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0008.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0008.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 62f786dbb36153bea495e5d6507aff1f data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0008;Biosample_Type=Stem Cell;Tissue_Type=Embryo;Biosample_Name=iMeLCs induced from primed UCLA1 hESCs;Cancer_Type=Normal;Region_Number=65001;Length=34707.324 kb;GEO_SRA=SRR7942729;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements system_category Embryo life_stage Embryonic track_name ATACdb_v1.03 iMeLCs ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic] [Accessible chromatin]