H3K4ac • IMR-90 NGENCTKTLS56AN • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq IMR-90 Histone Show metadata Download track Track metadata identifier NGENCTKTLS56AN data_source ENCODE Download track Download number_of_intervals 149,502 bp_covered 56,171,025 output_type pseudoreplicated peaks genome_build hg38 cell_type IMR-90 biosample_type Cell line biosample_term_id EFO:0001196 tissue_category Lung encode_experiment_id ENCSR039ZLS biological_replicate 2 technical_replicate 2_2 antibody H3K4ac assay Histone ChIP-seq file_format bed narrowPeak file_size 3,744,962 downloaded_date 06/12/2022 release_date 11/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF432QDW.bed.gz processed_file_md5 8cdf842d1b9354cbab0eb2b42614a503 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF432QDW.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF432QDW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF432QDW/@@download/ENCFF432QDW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF432QDW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9a9f081e03bec2361ed348c97688a5e0 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens IMR-90;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=GEO:GSM521894,GEO:GSM521893;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=IMR90;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001196;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Embryonic track_name ENCODE IMR-90 (repl. 2) Histone ChIP-seq H3K4ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR039ZLS] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4ac • Mesendoderm NGENCUERIXV6MB • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mesendoderm Histone Show metadata Download track Track metadata identifier NGENCUERIXV6MB data_source ENCODE Download track Download number_of_intervals 115,538 bp_covered 28,259,744 output_type peaks genome_build hg38 cell_type Mesendoderm biosample_type In vitro differentiated cells biosample_term_id BTO:0003953 tissue_category Embryo encode_experiment_id ENCSR814MAF biological_replicate 1 technical_replicate 1_1 antibody H3K4ac assay Histone ChIP-seq file_format bed narrowPeak file_size 2,389,770 downloaded_date 06/10/2020 release_date 03/21/2017 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF161MUN.bed.gz processed_file_md5 ea983c48bb7c0ea07ed40bcb5d7c78f3 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF161MUN.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF161MUN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF161MUN/@@download/ENCFF161MUN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF161MUN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2f332504a2bcb09442ba5f24a96ce4df data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4ac peaks track_description version=2024;Biosample_summary=Homo sapiens mesendoderm originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM956017;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=r1.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=mesendoderm;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE3 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0000856;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Mesendoderm (repl. 1) Histone ChIP-seq H3K4ac peaks (narrowPeak) [Experiment: ENCSR814MAF] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4ac • H1-hESC NGENCVYQJDKC3A • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H1-hESC Histone Show metadata Download track Track metadata identifier NGENCVYQJDKC3A data_source ENCODE Download track Download number_of_intervals 34,003 bp_covered 7,784,737 output_type pseudoreplicated peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR130EML biological_replicate 1 technical_replicate 1_1 antibody H3K4ac assay Histone ChIP-seq file_format bed narrowPeak file_size 701,268 downloaded_date 06/12/2022 release_date 12/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF961KNI.bed.gz processed_file_md5 997f4f20b2a6d93e30fcd7494145f89e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF961KNI.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF961KNI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF961KNI/@@download/ENCFF961KNI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF961KNI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 684a45469f5e35af3a9a4a7e05f2e061 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM605311,GEO:GSM667624;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1) Histone ChIP-seq H3K4ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR130EML] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4ac • H1-hESC NGENCX34G3CNF7 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H1-hESC Histone Show metadata Download track Track metadata identifier NGENCX34G3CNF7 data_source ENCODE Download track Download number_of_intervals 59,435 bp_covered 10,751,746 output_type peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR130EML biological_replicate 2 technical_replicate 2_1 antibody H3K4ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,180,086 downloaded_date 06/10/2020 release_date 02/17/2017 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF132FNA.bed.gz processed_file_md5 139a5509295c7a34cbd24b61e2a9c0dd wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF132FNA.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF132FNA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF132FNA/@@download/ENCFF132FNA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF132FNA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 445a8bfef1d0313c7ec4410e01137ae8 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4ac peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM605311,GEO:GSM667624;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=r2.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE3 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 2) Histone ChIP-seq H3K4ac peaks (narrowPeak) [Experiment: ENCSR130EML] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4ac • H9 NGENCXBM5JJFEK • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H9 Histone Show metadata Download track Track metadata identifier NGENCXBM5JJFEK data_source ENCODE Download track Download number_of_intervals 913 bp_covered 589,504 output_type pseudoreplicated peaks genome_build hg38 cell_type H9 biosample_type Stem cell biosample_term_id EFO:0003045 tissue_category Embryo encode_experiment_id ENCSR230WNU biological_replicate 1 technical_replicate 1_3 antibody H3K4ac assay Histone ChIP-seq file_format bed narrowPeak file_size 21,562 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF737BIP.bed.gz processed_file_md5 b4d0b97d07c12c825dd4c67421fe0741 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF737BIP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF737BIP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF737BIP/@@download/ENCFF737BIP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF737BIP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 359430a63099bddaac513779a573c1bd data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H9;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSM667625,GEO:GSM752976;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H9;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003045;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H9 (repl. 1) Histone ChIP-seq H3K4ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR230WNU] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4ac • IMR-90 NGENCXH2DHOQST • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq IMR-90 Histone Show metadata Download track Track metadata identifier NGENCXH2DHOQST data_source ENCODE Download track Download number_of_intervals 160,379 bp_covered 80,874,900 output_type pseudoreplicated peaks genome_build hg38 cell_type IMR-90 biosample_type Cell line biosample_term_id EFO:0001196 tissue_category Lung encode_experiment_id ENCSR039ZLS biological_replicate 1 technical_replicate 1_2 antibody H3K4ac assay Histone ChIP-seq file_format bed narrowPeak file_size 4,143,765 downloaded_date 06/12/2022 release_date 11/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF920ROY.bed.gz processed_file_md5 263dffeee3d3e45b033a4166d5f5994c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF920ROY.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF920ROY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF920ROY/@@download/ENCFF920ROY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF920ROY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f315322c0d7a5a76432d73f158195f3f data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens IMR-90;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=GEO:GSM521894,GEO:GSM521893;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=IMR90;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001196;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Embryonic track_name ENCODE IMR-90 (repl. 1) Histone ChIP-seq H3K4ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR039ZLS] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4ac • H1-hESC NGENCZOA7ATYUF • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H1-hESC Histone Show metadata Download track Track metadata identifier NGENCZOA7ATYUF data_source ENCODE Download track Download number_of_intervals 30,582 bp_covered 9,112,174 output_type replicated peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR130EML biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4ac assay Histone ChIP-seq file_format bed narrowPeak file_size 690,024 downloaded_date 06/12/2022 release_date 12/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF945FIM.bed.gz processed_file_md5 1d31ef9a4ce1743240df7f3e49cc7a94 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF945FIM.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF945FIM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF945FIM/@@download/ENCFF945FIM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF945FIM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ca05c70dce5dba323b1d04297f5bab91 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4ac replicated peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM605311,GEO:GSM667624;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1, 2) Histone ChIP-seq H3K4ac replicated peaks (narrowPeak) [Experiment: ENCSR130EML] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4ac • IMR-90 NGRMP2J74F7W7O • ROADMAP25693563 ChIP-seq IMR-90 Histone Show metadata Download track Track metadata identifier NGRMP2J74F7W7O data_source ROADMAP Download track Download number_of_intervals 86,968 bp_covered 232,143,528 output_type peaks genome_build hg38 cell_type IMR-90 biosample_type Cell line biosample_term_id EFO:0001196 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4ac assay ChIP-seq file_format bed gappedPeak-lifted file_size 5,041,243 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/28/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.IMR90.H3K4ac.SK16.gappedPeak.lifted.bed.gz processed_file_md5 7c3972ae158a5f5af8dbf464754ef9af wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.IMR90.H3K4ac.SK16.gappedPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.IMR90.H3K4ac.SK16.gappedPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/gappedPeak/UCSD.IMR90.H3K4ac.SK16.gappedPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/gappedpeak/UCSD.IMR90.H3K4ac.SK16.gappedPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/gappedpeak/ raw_file_md5 e9d1af85d468ed1e9be6b871f29e684e data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4ac peaks track_description version=2015;Original_cell_type=IMR 90;Donor=SK16;schema=BED3+15;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=EFO:0001196;is_hg38_lifted=yes system_category Respiratory life_stage Unknown track_name ROADMAP IMR-90 ChIP-seq H3K4ac-histone-mark peaks (gappedPeak-lifted) [Histone ChIP-seq peaks]
H3K4ac • IMR-90 NGRMP3C3D525DQ • ROADMAP25693563 ChIP-seq IMR-90 Histone Show metadata Download track Track metadata identifier NGRMP3C3D525DQ data_source ROADMAP Download track Download number_of_intervals 245,916 bp_covered 73,070,665 output_type peaks genome_build hg38 cell_type IMR-90 biosample_type Cell line biosample_term_id EFO:0001196 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4ac assay ChIP-seq file_format bed narrowPeak-lifted file_size 8,384,953 downloaded_date 08/15/2018 release_date 11/30/2014 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/UCSD.IMR90.H3K4ac.SK16.narrowPeak.lifted.bed.gz processed_file_md5 5cd551a8ad5325f842f44a926508e0d0 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/UCSD.IMR90.H3K4ac.SK16.narrowPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/UCSD.IMR90.H3K4ac.SK16.narrowPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/narrowPeak/UCSD.IMR90.H3K4ac.SK16.narrowPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/narrowpeak/UCSD.IMR90.H3K4ac.SK16.narrowPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/narrowpeak/ raw_file_md5 625f8261c92c5c1855d6a3ffe54411a2 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4ac peaks track_description version=2015;Original_cell_type=IMR 90;Donor=SK16;schema=BED3+10;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=EFO:0001196;is_hg38_lifted=yes system_category Respiratory life_stage Unknown track_name ROADMAP IMR-90 ChIP-seq H3K4ac-histone-mark peaks (narrowPeak-lifted) [Histone ChIP-seq peaks]
H3K4ac • H9 NGRMP3M6WB24SP • ROADMAP25693563 ChIP-seq H9 Histone Show metadata Download track Track metadata identifier NGRMP3M6WB24SP data_source ROADMAP Download track Download number_of_intervals 12,722 bp_covered 21,892,566 output_type peaks genome_build hg38 cell_type H9 biosample_type Stem cell biosample_term_id EFO:0003045 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4ac assay ChIP-seq file_format bed gappedPeak-lifted file_size 630,949 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/28/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.H9.H3K4ac.SK379.gappedPeak.lifted.bed.gz processed_file_md5 f91c5c73be50c76ff879006e272cce59 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.H9.H3K4ac.SK379.gappedPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.H9.H3K4ac.SK379.gappedPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/gappedPeak/UCSD.H9.H3K4ac.SK379.gappedPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/gappedpeak/UCSD.H9.H3K4ac.SK379.gappedPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/gappedpeak/ raw_file_md5 f3842efe08830389a042a5c3c3e597b8 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4ac peaks track_description version=2015;Original_cell_type=H9;Donor=SK379;schema=BED3+15;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=EFO:0003045;is_hg38_lifted=yes system_category Embryo life_stage Embryonic track_name ROADMAP H9 ChIP-seq H3K4ac-histone-mark peaks (gappedPeak-lifted) [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4ac • Mesendoderm NGRMP3TTX755Y6 • ROADMAP25693563 ChIP-seq Mesendoderm Histone Show metadata Download track Track metadata identifier NGRMP3TTX755Y6 data_source ROADMAP Download track Download number_of_intervals 668,922 bp_covered 669,039,471 output_type peaks genome_build hg38 cell_type Mesendoderm biosample_type In vitro differentiated cells biosample_term_id BTO:0003953 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4ac assay ChIP-seq file_format bed broadPeak-lifted file_size 21,802,057 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/27/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1_BMP4_Derived_Mesendoderm_Cultured_Cells.H3K4ac.AK413.broadPeak.lifted.bed.gz processed_file_md5 1e1b21da71dbaa597697b5a8da52b3ad wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1_BMP4_Derived_Mesendoderm_Cultured_Cells.H3K4ac.AK413.broadPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1_BMP4_Derived_Mesendoderm_Cultured_Cells.H3K4ac.AK413.broadPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/broadPeak/UCSD.H1_BMP4_Derived_Mesendoderm_Cultured_Cells.H3K4ac.AK413.broadPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/broadpeak/UCSD.H1_BMP4_Derived_Mesendoderm_Cultured_Cells.H3K4ac.AK413.broadPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/broadpeak/ raw_file_md5 384d6edefc502d20efbc9d0984ee761b data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4ac peaks track_description version=2015;Original_cell_type=H1 BMP4 Derived Mesendoderm Cultured Cells;Donor=AK413;schema=BED3+9;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=NTR:0000856;is_hg38_lifted=yes system_category Embryo life_stage Embryonic track_name ROADMAP Mesendoderm ChIP-seq H3K4ac-histone-mark peaks (broadPeak-lifted) [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4ac • H1-hESC NGRMP4Q3TNDQSB • ROADMAP25693563 ChIP-seq H1-hESC Histone Show metadata Download track Track metadata identifier NGRMP4Q3TNDQSB data_source ROADMAP Download track Download number_of_intervals 1,073,924 bp_covered 798,171,898 output_type peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4ac assay ChIP-seq file_format bed broadPeak-lifted file_size 34,200,689 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/27/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1.H3K4ac.SAK207.broadPeak.lifted.bed.gz processed_file_md5 6a6ddec4aac0d1a92fafb4a3bc62666d wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1.H3K4ac.SAK207.broadPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1.H3K4ac.SAK207.broadPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/broadPeak/UCSD.H1.H3K4ac.SAK207.broadPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/broadpeak/UCSD.H1.H3K4ac.SAK207.broadPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/broadpeak/ raw_file_md5 dddc7f721076fe45e6b70527c9cb1216 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4ac peaks track_description version=2015;Original_cell_type=H1;Donor=SAK207;schema=BED3+9;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=yes system_category Embryo life_stage Embryonic track_name ROADMAP H1-hESC ChIP-seq H3K4ac-histone-mark peaks (broadPeak-lifted) [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4ac • H1-hESC NGRMP4WHY5NSQS • ROADMAP25693563 ChIP-seq H1-hESC Histone Show metadata Download track Track metadata identifier NGRMP4WHY5NSQS data_source ROADMAP Download track Download number_of_intervals 427,328 bp_covered 242,065,406 output_type peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4ac assay ChIP-seq file_format bed broadPeak-lifted file_size 12,688,369 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/27/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1.H3K4ac.AK51.broadPeak.lifted.bed.gz processed_file_md5 45830927a682fcbb26334c5e7598fe3d wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1.H3K4ac.AK51.broadPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1.H3K4ac.AK51.broadPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/broadPeak/UCSD.H1.H3K4ac.AK51.broadPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/broadpeak/UCSD.H1.H3K4ac.AK51.broadPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/broadpeak/ raw_file_md5 05640de3bafa17fadaa79aab7c99cc4c data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4ac peaks track_description version=2015;Original_cell_type=H1;Donor=AK51;schema=BED3+9;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=yes system_category Embryo life_stage Embryonic track_name ROADMAP H1-hESC ChIP-seq H3K4ac-histone-mark peaks (broadPeak-lifted) [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4ac • Mesenchymal stem cell NGRMP52PRFM2KW • ROADMAP25693563 ChIP-seq Mesenchymal stem cell Histone Show metadata Download track Track metadata identifier NGRMP52PRFM2KW data_source ROADMAP Download track Download number_of_intervals 703,836 bp_covered 603,203,522 output_type peaks genome_build hg38 cell_type Mesenchymal stem cell biosample_type Stem cell biosample_term_id CL:0000134 tissue_category Connective Tissue encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4ac assay ChIP-seq file_format bed broadPeak-lifted file_size 23,210,461 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/27/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1_Derived_Mesenchymal_Stem_Cells.H3K4ac.AK285.broadPeak.lifted.bed.gz processed_file_md5 f70cb4b2d0f081927b6209de43457945 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1_Derived_Mesenchymal_Stem_Cells.H3K4ac.AK285.broadPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1_Derived_Mesenchymal_Stem_Cells.H3K4ac.AK285.broadPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/broadPeak/UCSD.H1_Derived_Mesenchymal_Stem_Cells.H3K4ac.AK285.broadPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/broadpeak/UCSD.H1_Derived_Mesenchymal_Stem_Cells.H3K4ac.AK285.broadPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/broadpeak/ raw_file_md5 614de9032dbff15a6c22504f8728e2ae data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4ac peaks track_description version=2015;Original_cell_type=H1 Derived Mesenchymal Stem Cells;Donor=AK285;schema=BED3+9;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=yes system_category Skeletal life_stage Embryonic track_name ROADMAP Mesenchymal stem cell ChIP-seq H3K4ac-histone-mark peaks (broadPeak-lifted) [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4ac • IMR-90 NGRMP7KU5HBI7J • ROADMAP25693563 ChIP-seq IMR-90 Histone Show metadata Download track Track metadata identifier NGRMP7KU5HBI7J data_source ROADMAP Download track Download number_of_intervals 344,105 bp_covered 367,959,511 output_type peaks genome_build hg38 cell_type IMR-90 biosample_type Cell line biosample_term_id EFO:0001196 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4ac assay ChIP-seq file_format bed broadPeak-lifted file_size 11,384,115 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/27/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/UCSD.IMR90.H3K4ac.SK16.broadPeak.lifted.bed.gz processed_file_md5 1c395e6b7f545926ce2a01c522962c43 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/UCSD.IMR90.H3K4ac.SK16.broadPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/UCSD.IMR90.H3K4ac.SK16.broadPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/broadPeak/UCSD.IMR90.H3K4ac.SK16.broadPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/broadpeak/UCSD.IMR90.H3K4ac.SK16.broadPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/broadpeak/ raw_file_md5 d9f774df23da9927527d8177c011cf84 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4ac peaks track_description version=2015;Original_cell_type=IMR 90;Donor=SK16;schema=BED3+9;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=EFO:0001196;is_hg38_lifted=yes system_category Respiratory life_stage Unknown track_name ROADMAP IMR-90 ChIP-seq H3K4ac-histone-mark peaks (broadPeak-lifted) [Histone ChIP-seq peaks]
H3K4ac • H1-hESC NGRMPAGB77FBEN • ROADMAP25693563 ChIP-seq H1-hESC Histone Show metadata Download track Track metadata identifier NGRMPAGB77FBEN data_source ROADMAP Download track Download number_of_intervals 19,373 bp_covered 19,742,671 output_type peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4ac assay ChIP-seq file_format bed gappedPeak-lifted file_size 868,622 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/28/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.H1.H3K4ac.AK51.gappedPeak.lifted.bed.gz processed_file_md5 6015a071eb74d1ef905fb826d88fda18 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.H1.H3K4ac.AK51.gappedPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.H1.H3K4ac.AK51.gappedPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/gappedPeak/UCSD.H1.H3K4ac.AK51.gappedPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/gappedpeak/UCSD.H1.H3K4ac.AK51.gappedPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/gappedpeak/ raw_file_md5 841a2a09f982517c4d0033b802c72d32 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4ac peaks track_description version=2015;Original_cell_type=H1;Donor=AK51;schema=BED3+15;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=yes system_category Embryo life_stage Embryonic track_name ROADMAP H1-hESC ChIP-seq H3K4ac-histone-mark peaks (gappedPeak-lifted) [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4ac • IMR-90 NGRMPBMQ6DNMOP • ROADMAP25693563 ChIP-seq IMR-90 Histone Show metadata Download track Track metadata identifier NGRMPBMQ6DNMOP data_source ROADMAP Download track Download number_of_intervals 222,955 bp_covered 54,379,992 output_type peaks genome_build hg38 cell_type IMR-90 biosample_type Cell line biosample_term_id EFO:0001196 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4ac assay ChIP-seq file_format bed narrowPeak-lifted file_size 7,493,420 downloaded_date 08/15/2018 release_date 11/30/2014 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/UCSD.IMR90.H3K4ac.LL239.narrowPeak.lifted.bed.gz processed_file_md5 37689fdedd39539b054b8a0403f19f0f wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/UCSD.IMR90.H3K4ac.LL239.narrowPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/UCSD.IMR90.H3K4ac.LL239.narrowPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/narrowPeak/UCSD.IMR90.H3K4ac.LL239.narrowPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/narrowpeak/UCSD.IMR90.H3K4ac.LL239.narrowPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/narrowpeak/ raw_file_md5 6f8853d3f4ac630059720cb2ccd864f3 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4ac peaks track_description version=2015;Original_cell_type=IMR 90;Donor=LL239;schema=BED3+10;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=EFO:0001196;is_hg38_lifted=yes system_category Respiratory life_stage Unknown track_name ROADMAP IMR-90 ChIP-seq H3K4ac-histone-mark peaks (narrowPeak-lifted) [Histone ChIP-seq peaks]
H3K4ac • H9 NGRMPD7THZZ2T2 • ROADMAP25693563 ChIP-seq H9 Histone Show metadata Download track Track metadata identifier NGRMPD7THZZ2T2 data_source ROADMAP Download track Download number_of_intervals 178,023 bp_covered 315,369,799 output_type peaks genome_build hg38 cell_type H9 biosample_type Stem cell biosample_term_id EFO:0003045 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4ac assay ChIP-seq file_format bed broadPeak-lifted file_size 5,367,736 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/27/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/UCSD.H9.H3K4ac.SK328.broadPeak.lifted.bed.gz processed_file_md5 3acae815c69f0236205b8ff6083ead0c wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/UCSD.H9.H3K4ac.SK328.broadPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/UCSD.H9.H3K4ac.SK328.broadPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/broadPeak/UCSD.H9.H3K4ac.SK328.broadPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/broadpeak/UCSD.H9.H3K4ac.SK328.broadPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/broadpeak/ raw_file_md5 5e95228bf10b8c1814a1d3a6238fbf64 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4ac peaks track_description version=2015;Original_cell_type=H9;Donor=SK328;schema=BED3+9;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=EFO:0003045;is_hg38_lifted=yes system_category Embryo life_stage Embryonic track_name ROADMAP H9 ChIP-seq H3K4ac-histone-mark peaks (broadPeak-lifted) [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4ac • Trophoblast NGRMPE4EYVOI3C • ROADMAP25693563 ChIP-seq Trophoblast Histone Show metadata Download track Track metadata identifier NGRMPE4EYVOI3C data_source ROADMAP Download track Download number_of_intervals 635,216 bp_covered 493,870,592 output_type peaks genome_build hg38 cell_type Trophoblast biosample_type In vitro differentiated cells biosample_term_id UBERON:0000088 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4ac assay ChIP-seq file_format bed broadPeak-lifted file_size 20,113,414 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/27/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1_BMP4_Derived_Trophoblast_Cultured_Cells.H3K4ac.AY228.broadPeak.lifted.bed.gz processed_file_md5 c31ade3f189fefe40725b0bfc0b21bc2 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1_BMP4_Derived_Trophoblast_Cultured_Cells.H3K4ac.AY228.broadPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1_BMP4_Derived_Trophoblast_Cultured_Cells.H3K4ac.AY228.broadPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/broadPeak/UCSD.H1_BMP4_Derived_Trophoblast_Cultured_Cells.H3K4ac.AY228.broadPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/broadpeak/UCSD.H1_BMP4_Derived_Trophoblast_Cultured_Cells.H3K4ac.AY228.broadPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/broadpeak/ raw_file_md5 0bb713fbc8a04819769b4b23f422a57e data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4ac peaks track_description version=2015;Original_cell_type=H1 BMP4 Derived Trophoblast Cultured Cells;Donor=AY228;schema=BED3+9;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=NTR:0000856;is_hg38_lifted=yes system_category Embryo life_stage Embryonic track_name ROADMAP Trophoblast ChIP-seq H3K4ac-histone-mark peaks (broadPeak-lifted) [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4ac • Trophoblast NGRMPGG52X5Z2B • ROADMAP25693563 ChIP-seq Trophoblast Histone Show metadata Download track Track metadata identifier NGRMPGG52X5Z2B data_source ROADMAP Download track Download number_of_intervals 474,414 bp_covered 390,987,567 output_type peaks genome_build hg38 cell_type Trophoblast biosample_type In vitro differentiated cells biosample_term_id UBERON:0000088 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4ac assay ChIP-seq file_format bed broadPeak-lifted file_size 15,321,811 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/27/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1_BMP4_Derived_Trophoblast_Cultured_Cells.H3K4ac.AY200.broadPeak.lifted.bed.gz processed_file_md5 03ae3df93766ba0dc0a2b29b4828e2cc wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1_BMP4_Derived_Trophoblast_Cultured_Cells.H3K4ac.AY200.broadPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1_BMP4_Derived_Trophoblast_Cultured_Cells.H3K4ac.AY200.broadPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/broadPeak/UCSD.H1_BMP4_Derived_Trophoblast_Cultured_Cells.H3K4ac.AY200.broadPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/broadpeak/UCSD.H1_BMP4_Derived_Trophoblast_Cultured_Cells.H3K4ac.AY200.broadPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/broadpeak/ raw_file_md5 c3e09226063a54dd2a46c78df49ba0f8 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4ac peaks track_description version=2015;Original_cell_type=H1 BMP4 Derived Trophoblast Cultured Cells;Donor=AY200;schema=BED3+9;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=NTR:0000856;is_hg38_lifted=yes system_category Embryo life_stage Embryonic track_name ROADMAP Trophoblast ChIP-seq H3K4ac-histone-mark peaks (broadPeak-lifted) [Life stage: Embryonic] [Histone ChIP-seq peaks]