CHAMP1 • K562 NGENCSYV3H5BDX • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCSYV3H5BDX data_source ENCODE Download track Download number_of_intervals 4,170 bp_covered 1,320,750 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR315NNL biological_replicate 1, 3 technical_replicate 1_1, 3_1 antibody CHAMP1 assay TF ChIP-seq file_format bed narrowPeak file_size 83,605 downloaded_date 06/12/2022 release_date 11/28/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF543DIE.bed.gz processed_file_md5 a731da99d271be77bbead95f63703e1d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF543DIE.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF543DIE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF543DIE/@@download/ENCFF543DIE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF543DIE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 07edc3851c752ac13eb78ede8a83bbe6 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC7333332;External_resources=FactorBook:ENCSR315NNL,GEO:GSE127583;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-11-14,2014-07-07;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 3) TF ChIP-seq CHAMP1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR315NNL] [Life stage: Adult] [TF ChIP-seq peaks]
CHAMP1 • K562 NGENCUAU4OUBUV • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCUAU4OUBUV data_source ENCODE Download track Download number_of_intervals 12,909 bp_covered 5,690,383 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR065XVO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHAMP1 assay TF ChIP-seq file_format bed narrowPeak file_size 257,009 downloaded_date 06/12/2022 release_date 11/29/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF860ZIW.bed.gz processed_file_md5 46c8eb42aaa7e7c14f19cfef386583ee wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF860ZIW.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF860ZIW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF860ZIW/@@download/ENCFF860ZIW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF860ZIW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 431e01a08f29784cee89aed610f821dd data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR065XVO,GEO:GSE91447;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-09-20;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq CHAMP1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR065XVO] [Life stage: Adult] [TF ChIP-seq peaks]
CHAMP1 • K562 NGENCUN3X2VD4D • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCUN3X2VD4D data_source ENCODE Download track Download number_of_intervals 2,519 bp_covered 707,361 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR315NNL biological_replicate 3 technical_replicate 3_1 antibody CHAMP1 assay TF ChIP-seq file_format bed narrowPeak file_size 50,849 downloaded_date 06/12/2022 release_date 11/28/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF581PZR.bed.gz processed_file_md5 46233a627013cff3df3db8a8688d941d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF581PZR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF581PZR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF581PZR/@@download/ENCFF581PZR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF581PZR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8ad694d742f53512b491d452ec9813df data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC7333332;External_resources=FactorBook:ENCSR315NNL,GEO:GSE127583;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-11-14,2014-07-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 3) TF ChIP-seq CHAMP1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR315NNL] [Life stage: Adult] [TF ChIP-seq peaks]
CHAMP1 • K562 NGENCVJKKCNGQF • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCVJKKCNGQF data_source ENCODE Download track Download number_of_intervals 11,983 bp_covered 5,267,948 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR065XVO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHAMP1 assay TF ChIP-seq file_format bed narrowPeak file_size 239,594 downloaded_date 06/12/2022 release_date 11/29/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF764DNV.bed.gz processed_file_md5 174b5fd6435490212b947c74597251df wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF764DNV.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF764DNV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF764DNV/@@download/ENCFF764DNV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF764DNV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ade6989056e92303e88631578e92808d data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR065XVO,GEO:GSE91447;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-09-20;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq CHAMP1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR065XVO] [Life stage: Adult] [TF ChIP-seq peaks]
CHAMP1 • K562 NGFTB7UP47PZGJ • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB7UP47PZGJ data_source Factorbook Download track Download number_of_intervals 318 bp_covered 9,540 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR315NNL biological_replicate 1, 3 technical_replicate 1_1, 3_1 antibody CHAMP1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 6,629 downloaded_date 07/10/2024 release_date 11/14/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF541VYN_TCCCACCAGGTCCCTCCCWCRACACGTGGG_filtered.bed.gz processed_file_md5 2cca02a2118dbd00865d9ac316010fa3 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF541VYN_TCCCACCAGGTCCCTCCCWCRACACGTGGG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF541VYN_TCCCACCAGGTCCCTCCCWCRACACGTGGG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF541VYN_TCCCACCAGGTCCCTCCCWCRACACGTGGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF541VYN_TCCCACCAGGTCCCTCCCWCRACACGTGGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d80198293f43c96048cc2b9b7bcda74b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF541VYN;ENCODE_bigBed_id=ENCFF429USX;PMID=34755879;Motif_sequence=TCCCACCAGGTCCCTCCCWCRACACGTGGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 3) Motif finding CHAMP1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR315NNL] [Life stage: Adult] [TFBS]
CHAMP1 • K562 NGFTBEM4UFEIY7 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBEM4UFEIY7 data_source Factorbook Download track Download number_of_intervals 3,301 bp_covered 79,224 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR315NNL biological_replicate 1, 3 technical_replicate 1_1, 3_1 antibody CHAMP1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 59,154 downloaded_date 07/10/2024 release_date 11/14/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF541VYN_CSRGSRYGGTSKCKMWCKCCTGWM_sorted.bed.gz processed_file_md5 fa93a48970ca4ec7e80fd3d43279d099 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF541VYN_CSRGSRYGGTSKCKMWCKCCTGWM_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF541VYN_CSRGSRYGGTSKCKMWCKCCTGWM_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF541VYN_CSRGSRYGGTSKCKMWCKCCTGWM.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF541VYN_CSRGSRYGGTSKCKMWCKCCTGWM.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 042a24f118d4959b07a24595d5aa81c9 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF541VYN;ENCODE_bigBed_id=ENCFF429USX;PMID=34755879;Motif_sequence=CSRGSRYGGTSKCKMWCKCCTGWM;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 3) Motif finding CHAMP1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR315NNL] [Life stage: Adult] [TFBS]
CHAMP1 • K562 NGFTBK2RTBV4FA • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBK2RTBV4FA data_source Factorbook Download track Download number_of_intervals 1,072 bp_covered 32,160 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR315NNL biological_replicate 1, 3 technical_replicate 1_1, 3_1 antibody CHAMP1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 25,719 downloaded_date 07/10/2024 release_date 11/14/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF541VYN_TCCCACCAGGTCCCTCCCWCRACACGTGGG_sorted.bed.gz processed_file_md5 ebd134b305018ce2eb4d1f618b871dce wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF541VYN_TCCCACCAGGTCCCTCCCWCRACACGTGGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF541VYN_TCCCACCAGGTCCCTCCCWCRACACGTGGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF541VYN_TCCCACCAGGTCCCTCCCWCRACACGTGGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF541VYN_TCCCACCAGGTCCCTCCCWCRACACGTGGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d80198293f43c96048cc2b9b7bcda74b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF541VYN;ENCODE_bigBed_id=ENCFF429USX;PMID=34755879;Motif_sequence=TCCCACCAGGTCCCTCCCWCRACACGTGGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 3) Motif finding CHAMP1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR315NNL] [Life stage: Adult] [TFBS]
CHAMP1 • K562 NGFTBMPRKHRMHH • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBMPRKHRMHH data_source Factorbook Download track Download number_of_intervals 4,105 bp_covered 77,995 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR065XVO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHAMP1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 74,477 downloaded_date 07/10/2024 release_date 09/20/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF515GUE_YCTTATCTSYNNNNNCCAG_sorted.bed.gz processed_file_md5 8f835b39c8530953d4cb39b9e6022b20 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF515GUE_YCTTATCTSYNNNNNCCAG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF515GUE_YCTTATCTSYNNNNNCCAG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF515GUE_YCTTATCTSYNNNNNCCAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF515GUE_YCTTATCTSYNNNNNCCAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 04182b8d92c0ad4092b984feaa472f30 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF515GUE;ENCODE_bigBed_id=ENCFF860ZIW;PMID=34755879;Motif_sequence=YCTTATCTSYNNNNNCCAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CHAMP1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR065XVO] [Life stage: Adult] [TFBS]
CHAMP1 • K562 NGFTBQCCQYP2UT • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBQCCQYP2UT data_source Factorbook Download track Download number_of_intervals 2,168 bp_covered 52,032 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR315NNL biological_replicate 1, 3 technical_replicate 1_1, 3_1 antibody CHAMP1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 33,023 downloaded_date 07/10/2024 release_date 11/14/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF541VYN_CSRGSRYGGTSKCKMWCKCCTGWM_filtered.bed.gz processed_file_md5 aa996b344b4389455fc3ed0fe3a8aa6b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF541VYN_CSRGSRYGGTSKCKMWCKCCTGWM_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF541VYN_CSRGSRYGGTSKCKMWCKCCTGWM_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF541VYN_CSRGSRYGGTSKCKMWCKCCTGWM.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF541VYN_CSRGSRYGGTSKCKMWCKCCTGWM.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 042a24f118d4959b07a24595d5aa81c9 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF541VYN;ENCODE_bigBed_id=ENCFF429USX;PMID=34755879;Motif_sequence=CSRGSRYGGTSKCKMWCKCCTGWM;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 3) Motif finding CHAMP1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR315NNL] [Life stage: Adult] [TFBS]
CHAMP1 • K562 NGFTBRGJ6Q4DVM • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBRGJ6Q4DVM data_source Factorbook Download track Download number_of_intervals 1,520 bp_covered 31,920 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR065XVO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHAMP1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 19,163 downloaded_date 07/10/2024 release_date 09/20/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF515GUE_GTCAGGAGATCGAGACCATCC_filtered.bed.gz processed_file_md5 b4a54ef590039c33f122e64b79db8489 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF515GUE_GTCAGGAGATCGAGACCATCC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF515GUE_GTCAGGAGATCGAGACCATCC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF515GUE_GTCAGGAGATCGAGACCATCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF515GUE_GTCAGGAGATCGAGACCATCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 88c4b8b18ce5e21ebe0000d914f7e9a7 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF515GUE;ENCODE_bigBed_id=ENCFF860ZIW;PMID=34755879;Motif_sequence=GTCAGGAGATCGAGACCATCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CHAMP1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR065XVO] [Life stage: Adult] [TFBS]
CHAMP1 • K562 NGFTBX63ZIUI2W • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBX63ZIUI2W data_source Factorbook Download track Download number_of_intervals 3,282 bp_covered 68,922 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR065XVO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHAMP1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 54,703 downloaded_date 07/10/2024 release_date 09/20/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF515GUE_GTCAGGAGATCGAGACCATCC_sorted.bed.gz processed_file_md5 2e6f177af48438dbf782c3d0233b56e8 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF515GUE_GTCAGGAGATCGAGACCATCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF515GUE_GTCAGGAGATCGAGACCATCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF515GUE_GTCAGGAGATCGAGACCATCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF515GUE_GTCAGGAGATCGAGACCATCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 88c4b8b18ce5e21ebe0000d914f7e9a7 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF515GUE;ENCODE_bigBed_id=ENCFF860ZIW;PMID=34755879;Motif_sequence=GTCAGGAGATCGAGACCATCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CHAMP1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR065XVO] [Life stage: Adult] [TFBS]
CHCHD3 • HepG2 NGENC4HQGWPSKG • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENC4HQGWPSKG data_source ENCODE Download track Download number_of_intervals 7,153 bp_covered 3,357,037 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR163PYB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHCHD3 assay TF ChIP-seq file_format bed narrowPeak file_size 142,441 downloaded_date 05/15/2024 release_date 07/23/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF629CII.bed.gz processed_file_md5 517b0494f5c4cbe452021a3abfa179a6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF629CII.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF629CII.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF629CII/@@download/ENCFF629CII.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF629CII.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9eb6d19042188b0200115bec31f433fc data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CHCHD3;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE231177;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-08-15,2022-07-25;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq CHCHD3 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR163PYB] [Life stage: Child] [TF ChIP-seq peaks]
CHCHD3 • HepG2 NGENC7I36OTAC4 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENC7I36OTAC4 data_source ENCODE Download track Download number_of_intervals 7,199 bp_covered 3,378,657 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR163PYB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHCHD3 assay TF ChIP-seq file_format bed narrowPeak file_size 143,582 downloaded_date 05/15/2024 release_date 07/23/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF430RKB.bed.gz processed_file_md5 7b3584886053731fbe54d626a7d0e78f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF430RKB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF430RKB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF430RKB/@@download/ENCFF430RKB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF430RKB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f4efead6d7b1bd780b5df14a68c28af1 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CHCHD3;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE231177;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-08-15,2022-07-25;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq CHCHD3 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR163PYB] [Life stage: Child] [TF ChIP-seq peaks]
CHCHD3 • K562 NGENC7JF3IQ7IG • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENC7JF3IQ7IG data_source ENCODE Download track Download number_of_intervals 673 bp_covered 177,859 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR775NLJ biological_replicate 2 technical_replicate 2_1 antibody CHCHD3 assay TF ChIP-seq file_format bed narrowPeak file_size 13,815 downloaded_date 06/12/2022 release_date 02/14/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF544XUY.bed.gz processed_file_md5 0cdde4adb67b8c71016a399ee6c1bd8a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF544XUY.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF544XUY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF544XUY/@@download/ENCFF544XUY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF544XUY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 cc2627ec5945805e68912a8b5fe62b1e data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CHCHD3;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE209095;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-03-07,2021-03-26;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v2.1.2 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq CHCHD3 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR775NLJ] [Life stage: Adult] [TF ChIP-seq peaks]
CHCHD3 • HepG2 NGENCGS3YYVPUG • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCGS3YYVPUG data_source ENCODE Download track Download number_of_intervals 3,255 bp_covered 1,676,481 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR163PYB biological_replicate 2 technical_replicate 2_1 antibody CHCHD3 assay TF ChIP-seq file_format bed narrowPeak file_size 65,646 downloaded_date 05/15/2024 release_date 07/23/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF668UMD.bed.gz processed_file_md5 14ba88aeec8a8c89963874248e85e775 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF668UMD.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF668UMD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF668UMD/@@download/ENCFF668UMD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF668UMD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 402d6d6297896abeed5f3671b48c3808 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CHCHD3;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE231177;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-08-15,2022-07-25;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) TF ChIP-seq CHCHD3 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR163PYB] [Life stage: Child] [TF ChIP-seq peaks]
CHCHD3 • HepG2 NGENCIC2TL4F4N • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCIC2TL4F4N data_source ENCODE Download track Download number_of_intervals 2,883 bp_covered 1,277,319 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR163PYB biological_replicate 1 technical_replicate 1_1 antibody CHCHD3 assay TF ChIP-seq file_format bed narrowPeak file_size 54,822 downloaded_date 05/15/2024 release_date 07/23/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF002KTR.bed.gz processed_file_md5 4ac56c1e0b132628d971ac7d8174b906 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF002KTR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF002KTR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF002KTR/@@download/ENCFF002KTR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF002KTR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7a5c607054f65abfd2fe1ac4a6e971b2 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CHCHD3;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE231177;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-08-15,2022-07-25;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) TF ChIP-seq CHCHD3 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR163PYB] [Life stage: Child] [TF ChIP-seq peaks]
CHCHD3 • K562 NGENCJ7ODSECHR • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCJ7ODSECHR data_source ENCODE Download track Download number_of_intervals 2,140 bp_covered 577,035 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR775NLJ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHCHD3 assay TF ChIP-seq file_format bed narrowPeak file_size 43,507 downloaded_date 06/12/2022 release_date 02/14/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF302LDF.bed.gz processed_file_md5 94fd69344037d295e685db02ab6e98da wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF302LDF.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF302LDF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF302LDF/@@download/ENCFF302LDF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF302LDF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 41877c9fc2900fbff2b81116714240d1 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CHCHD3;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE209095;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-03-07,2021-03-26;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v2.1.2 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq CHCHD3 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR775NLJ] [Life stage: Adult] [TF ChIP-seq peaks]
CHCHD3 • K562 NGENCKDJMSAC2T • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCKDJMSAC2T data_source ENCODE Download track Download number_of_intervals 2,287 bp_covered 616,925 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR775NLJ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHCHD3 assay TF ChIP-seq file_format bed narrowPeak file_size 46,447 downloaded_date 06/12/2022 release_date 02/14/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF499RZZ.bed.gz processed_file_md5 7c8161add1e2d7d9d61ab8bc4987a262 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF499RZZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF499RZZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF499RZZ/@@download/ENCFF499RZZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF499RZZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f8173afabb0289cf26a2c99ccece5bdc data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CHCHD3;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE209095;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-03-07,2021-03-26;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v2.1.2 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq CHCHD3 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR775NLJ] [Life stage: Adult] [TF ChIP-seq peaks]
CHCHD3 • K562 NGENCWPXYJF7LT • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCWPXYJF7LT data_source ENCODE Download track Download number_of_intervals 1,197 bp_covered 319,879 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR775NLJ biological_replicate 1 technical_replicate 1_1 antibody CHCHD3 assay TF ChIP-seq file_format bed narrowPeak file_size 24,649 downloaded_date 06/12/2022 release_date 02/14/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF090TPG.bed.gz processed_file_md5 4f02166a2ed62982289da6df78cef70d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF090TPG.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF090TPG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF090TPG/@@download/ENCFF090TPG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF090TPG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9bf400916fb8a17e7f5890fc6181c3e6 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CHCHD3;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE209095;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-03-07,2021-03-26;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v2.1.2 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq CHCHD3 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR775NLJ] [Life stage: Adult] [TF ChIP-seq peaks]
CHD1 • H1-hESC NGENC23SPMMZUO • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq H1-hESC TF Show metadata Download track Track metadata identifier NGENC23SPMMZUO data_source ENCODE Download track Download number_of_intervals 3,842 bp_covered 3,441,667 output_type conservative IDR thresholded peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000AQK biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1 antibody CHD1 assay TF ChIP-seq file_format bed narrowPeak file_size 69,445 downloaded_date 06/12/2022 release_date 02/11/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF925ZDS.bed.gz processed_file_md5 f7dbabadfbb10f3792144ccff9898a3f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF925ZDS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF925ZDS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF925ZDS/@@download/ENCFF925ZDS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF925ZDS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1806299f0640b051cac66fdd92a46f08 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32737473;External_resources=GEO:GSM1003444,UCSC-ENCODE-hg19:wgEncodeEH002095;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-03-06,2011-02-10;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=embryonic cell,stem cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1, 2) TF ChIP-seq CHD1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000AQK] [Life stage: Embryonic] [TF ChIP-seq peaks]