H3K4me1 • Frontal lobe NGCEEXPMMSRREW • CEEHRC27863956 ChIP-seq Frontal lobe Histone Show metadata Download track Track metadata identifier NGCEEXPMMSRREW data_source CEEHRC Download track Download number_of_intervals 110,737 bp_covered 113,251,840 output_type peaks genome_build hg38 cell_type Frontal lobe biosample_type Primary tissue biosample_term_id UBERON:0016525 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed bed3 file_size 932,992 downloaded_date 03/12/2021 release_date 10/12/2018 date_added_to_filer 01/19/2023 processed_file_download_url https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/98545.CEEHRC.CEMT0079.H3K4me1.peak_calls.bed.gz processed_file_md5 76a3df11d349b4b6089c7a66b44ffc31 wget_command wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/98545.CEEHRC.CEMT0079.H3K4me1.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/98545.CEEHRC.CEMT0079.H3K4me1.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/ link_out_url https://ihec-epigenomes.org/ raw_file_url https://epigenomesportal.ca/tracks/CEEHRC/hg38/98545.CEEHRC.CEMT0079.H3K4me1.peak_calls.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/IHEC/CEEHRC/98545.CEEHRC.CEMT0079.H3K4me1.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/CEEHRC/ raw_file_md5 d6a9f73ba7b418a6bbb62146312fe995 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=build 2020-10;Original_cell_type=Brain-Frontal Lobe-Right;ID=CEMT0079;disease=Brain Oligodendroglioma;donor_id=VNA136;donor_age=36;donor_sex=Male;sample_ontology=https://purl.obolibrary.org/obo/CL_0000128;schema=BED3;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/CEEHRC.html;original_biosample_term_id=CL_0000128;is_hg38_lifted=no system_category Nervous life_stage Adult track_name CEEHRC Frontal lobe ChIP-seq H3K4me1-histone-mark peaks (bed3) [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • CD19+ B cell NGCEEXRL7WJFHT • CEEHRC27863956 ChIP-seq CD19+ B cell Histone Show metadata Download track Track metadata identifier NGCEEXRL7WJFHT data_source CEEHRC Download track Download number_of_intervals 132,832 bp_covered 113,991,726 output_type peaks genome_build hg38 cell_type CD19+ B cell biosample_type Primary cell biosample_term_id CL:0001201 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed bed3 file_size 1,057,815 downloaded_date 03/12/2021 release_date 10/11/2018 date_added_to_filer 01/19/2023 processed_file_download_url https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/97057.CEEHRC.CEMT0026.H3K4me1.peak_calls.bed.gz processed_file_md5 04986adf48802c7d2b7b64d8a808c42a wget_command wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/97057.CEEHRC.CEMT0026.H3K4me1.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/97057.CEEHRC.CEMT0026.H3K4me1.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/ link_out_url https://ihec-epigenomes.org/ raw_file_url https://epigenomesportal.ca/tracks/CEEHRC/hg38/97057.CEEHRC.CEMT0026.H3K4me1.peak_calls.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/IHEC/CEEHRC/97057.CEEHRC.CEMT0026.H3K4me1.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/CEEHRC/ raw_file_md5 74837f0ac979befecdcec38e1833cb55 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=build 2020-10;Original_cell_type=CD19+ cells (B lymphocytes);ID=CEMT0026;disease=Blood-Peripheral Leukemia-Chronic lymphocytic leukemia;donor_id=235-68;donor_age=79;donor_sex=Male;sample_ontology=https://purl.obolibrary.org/obo/CL_0000236;schema=BED3;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/CEEHRC.html;original_biosample_term_id=CL_0000236;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name CEEHRC CD19+ B cell ChIP-seq H3K4me1-histone-mark peaks (bed3) [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • CD4+ NGCEEY3LBHMOW4 • CEEHRC27863956 ChIP-seq CD4+ Histone Show metadata Download track Track metadata identifier NGCEEY3LBHMOW4 data_source CEEHRC Download track Download number_of_intervals 172,077 bp_covered 92,676,464 output_type peaks genome_build hg38 cell_type CD4+ biosample_type Primary cell biosample_term_id CL:0000492 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed bed5 file_size 2,092,356 downloaded_date 03/12/2021 release_date 10/19/2020 date_added_to_filer 03/06/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed5/hg38/84042.CEEHRC.MS032101.H3K4me1.peak_calls.bed.gz processed_file_md5 0582a7039672eb990202b7b0a29f8bcb wget_command wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed5/hg38/84042.CEEHRC.MS032101.H3K4me1.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed5/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed5/hg38/84042.CEEHRC.MS032101.H3K4me1.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed5/hg38/ link_out_url https://ihec-epigenomes.org/ raw_file_url https://epigenomesportal.ca/tracks/CEEHRC/hg38/84042.CEEHRC.MS032101.H3K4me1.peak_calls.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/IHEC/CEEHRC/84042.CEEHRC.MS032101.H3K4me1.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/CEEHRC/ raw_file_md5 b2d04f5d1106392bb4cdf42e1a4c7562 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=build 2020-10;Original_cell_type=CD4-positive helper T cell;ID=MS032101;disease=Scleroderma;donor_id=McGill0321;donor_age=NA;donor_sex=Unknown;sample_ontology=https://purl.obolibrary.org/obo/CL_0000492;schema=BED5;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/CEEHRC.html;original_biosample_term_id=CL_0000492;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name CEEHRC CD4+ ChIP-seq H3K4me1-histone-mark peaks (bed5) [Histone ChIP-seq peaks]
H3K4me1 • Amygdala NGCEEYCJYWKOCB • CEEHRC27863956 ChIP-seq Amygdala Histone Show metadata Download track Track metadata identifier NGCEEYCJYWKOCB data_source CEEHRC Download track Download number_of_intervals 151,860 bp_covered 312,184,518 output_type peaks genome_build hg38 cell_type Amygdala biosample_type Primary tissue biosample_term_id UBERON:0001876 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed bed5 file_size 1,955,333 downloaded_date 03/12/2021 release_date 10/19/2020 date_added_to_filer 03/06/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed5/hg38/84476.CEEHRC.MS047301.H3K4me1.peak_calls.bed.gz processed_file_md5 e0d15e5d05aaba34c0453890577f8d29 wget_command wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed5/hg38/84476.CEEHRC.MS047301.H3K4me1.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed5/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed5/hg38/84476.CEEHRC.MS047301.H3K4me1.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed5/hg38/ link_out_url https://ihec-epigenomes.org/ raw_file_url https://epigenomesportal.ca/tracks/CEEHRC/hg38/84476.CEEHRC.MS047301.H3K4me1.peak_calls.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/IHEC/CEEHRC/84476.CEEHRC.MS047301.H3K4me1.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/CEEHRC/ raw_file_md5 4cb93ff520305f8bdb7e627c55225ecc data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=build 2020-10;Original_cell_type=Amygdala;ID=MS047301;disease=Unknown;donor_id=McGill0473;donor_age=NA;donor_sex=Unknown;sample_ontology=https://purl.obolibrary.org/obo/UBERON_0001876;schema=BED5;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/CEEHRC.html;original_biosample_term_id=UBERON_0001876;is_hg38_lifted=no system_category Nervous life_stage Unknown track_name CEEHRC Amygdala ChIP-seq H3K4me1-histone-mark peaks (bed5) [Histone ChIP-seq peaks]
H3K4me1 • Skeletal muscle tissue NGCEEYDRWL4GMO • CEEHRC27863956 ChIP-seq Skeletal muscle tissue Histone Show metadata Download track Track metadata identifier NGCEEYDRWL4GMO data_source CEEHRC Download track Download number_of_intervals 134,637 bp_covered 291,188,791 output_type peaks genome_build hg38 cell_type Skeletal muscle tissue biosample_type Primary tissue biosample_term_id UBERON:0001134 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed bed5 file_size 1,667,530 downloaded_date 03/12/2021 release_date 10/19/2020 date_added_to_filer 03/06/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed5/hg38/83308.CEEHRC.MS005301.H3K4me1.peak_calls.bed.gz processed_file_md5 87112131cce55f6deb0c76553471dca2 wget_command wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed5/hg38/83308.CEEHRC.MS005301.H3K4me1.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed5/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed5/hg38/83308.CEEHRC.MS005301.H3K4me1.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed5/hg38/ link_out_url https://ihec-epigenomes.org/ raw_file_url https://epigenomesportal.ca/tracks/CEEHRC/hg38/83308.CEEHRC.MS005301.H3K4me1.peak_calls.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/IHEC/CEEHRC/83308.CEEHRC.MS005301.H3K4me1.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/CEEHRC/ raw_file_md5 1fdead28143d8ac5316a91e13e0f5ed3 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=build 2020-10;Original_cell_type=Skeletal muscle tissue;ID=MS005301;disease=Unknown;donor_id=McGill0053;donor_age=NA;donor_sex=Male;sample_ontology=https://purl.obolibrary.org/obo/UBERON_0001134;schema=BED5;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/CEEHRC.html;original_biosample_term_id=UBERON_0001134;is_hg38_lifted=no system_category Muscular life_stage Unknown track_name CEEHRC Skeletal muscle tissue ChIP-seq H3K4me1-histone-mark peaks (bed5) [Histone ChIP-seq peaks]
H3K4me1 • Luminal epithelial cell NGCEEYQAVHJ5MU • CEEHRC27863956 ChIP-seq Luminal epithelial cell Histone Show metadata Download track Track metadata identifier NGCEEYQAVHJ5MU data_source CEEHRC Download track Download number_of_intervals 122,897 bp_covered 141,368,885 output_type peaks genome_build hg38 cell_type Luminal epithelial cell biosample_type Primary cell biosample_term_id CL:0002326 tissue_category Female Reproductive encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed bed3 file_size 1,016,149 downloaded_date 03/12/2021 release_date 10/31/2019 date_added_to_filer 01/19/2023 processed_file_download_url https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/99230.CEEHRC.CEMT0192.H3K4me1.peak_calls.bed.gz processed_file_md5 f47059e1432fce03a43010bbaabc312f wget_command wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/99230.CEEHRC.CEMT0192.H3K4me1.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/99230.CEEHRC.CEMT0192.H3K4me1.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/ link_out_url https://ihec-epigenomes.org/ raw_file_url https://epigenomesportal.ca/tracks/CEEHRC/hg38/99230.CEEHRC.CEMT0192.H3K4me1.peak_calls.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/IHEC/CEEHRC/99230.CEEHRC.CEMT0192.H3K4me1.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/CEEHRC/ raw_file_md5 52e0d33ca4208efa442aef34826a468f data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=build 2020-10;Original_cell_type=Luminal cell;ID=CEMT0192;disease=None;donor_id=38-18;donor_age=19;donor_sex=Female;sample_ontology=https://purl.obolibrary.org/obo/CL_0002326;schema=BED3;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/CEEHRC.html;original_biosample_term_id=CL_0002326;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name CEEHRC Luminal epithelial cell ChIP-seq H3K4me1-histone-mark peaks (bed3) [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • B cell NGCEEYSCLT7K44 • CEEHRC27863956 ChIP-seq B cell Histone Show metadata Download track Track metadata identifier NGCEEYSCLT7K44 data_source CEEHRC Download track Download number_of_intervals 88,461 bp_covered 133,166,031 output_type peaks genome_build hg38 cell_type B cell biosample_type Primary cell biosample_term_id CL:0000236 tissue_category Immune encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed bed3 file_size 676,984 downloaded_date 03/12/2021 release_date 10/12/2018 date_added_to_filer 01/19/2023 processed_file_download_url https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/98413.CEEHRC.CEMT0137.H3K4me1.peak_calls.bed.gz processed_file_md5 112f1db5d6623bd26c2068e34d77f9b2 wget_command wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/98413.CEEHRC.CEMT0137.H3K4me1.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/98413.CEEHRC.CEMT0137.H3K4me1.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/ link_out_url https://ihec-epigenomes.org/ raw_file_url https://epigenomesportal.ca/tracks/CEEHRC/hg38/98413.CEEHRC.CEMT0137.H3K4me1.peak_calls.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/IHEC/CEEHRC/98413.CEEHRC.CEMT0137.H3K4me1.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/CEEHRC/ raw_file_md5 6ecac729ddb869fa256f97d4be48e36a data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=build 2020-10;Original_cell_type=B cells;ID=CEMT0137;disease=None;donor_id=JLK_V6;donor_age=4;donor_sex=Male;sample_ontology=https://purl.obolibrary.org/obo/CL_2000006;schema=BED3;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/CEEHRC.html;original_biosample_term_id=CL_2000006;is_hg38_lifted=no system_category Lymphatic life_stage Child track_name CEEHRC B cell ChIP-seq H3K4me1-histone-mark peaks (bed3) [Life stage: Child] [Histone ChIP-seq peaks]
H3K4me1 • Thyroid NGCEEYYEGNHAPT • CEEHRC27863956 ChIP-seq Thyroid Histone Show metadata Download track Track metadata identifier NGCEEYYEGNHAPT data_source CEEHRC Download track Download number_of_intervals 140,056 bp_covered 136,736,344 output_type peaks genome_build hg38 cell_type Thyroid biosample_type Primary tissue biosample_term_id UBERON:0002046 tissue_category Endocrine encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed bed3 file_size 1,147,215 downloaded_date 03/12/2021 release_date 10/12/2018 date_added_to_filer 01/19/2023 processed_file_download_url https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/98165.CEEHRC.CEMT0091.H3K4me1.peak_calls.bed.gz processed_file_md5 7d5466ae1018ef4e4b35f6c38aa7fe0f wget_command wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/98165.CEEHRC.CEMT0091.H3K4me1.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/98165.CEEHRC.CEMT0091.H3K4me1.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/ link_out_url https://ihec-epigenomes.org/ raw_file_url https://epigenomesportal.ca/tracks/CEEHRC/hg38/98165.CEEHRC.CEMT0091.H3K4me1.peak_calls.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/IHEC/CEEHRC/98165.CEEHRC.CEMT0091.H3K4me1.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/CEEHRC/ raw_file_md5 281095cbfbcee89e6ad1d850deddce18 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=build 2020-10;Original_cell_type=Thyroid;ID=CEMT0091;disease=Thyroid Papillary Carcinoma;donor_id=SW-TTP-193;donor_age=44;donor_sex=Female;sample_ontology=https://purl.obolibrary.org/obo/UBERON_0002046;schema=BED3;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/CEEHRC.html;original_biosample_term_id=UBERON_0002046;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name CEEHRC Thyroid ChIP-seq H3K4me1-histone-mark peaks (bed3) [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Thyroid NGCEEYZUSEMPKM • CEEHRC27863956 ChIP-seq Thyroid Histone Show metadata Download track Track metadata identifier NGCEEYZUSEMPKM data_source CEEHRC Download track Download number_of_intervals 125,181 bp_covered 138,276,413 output_type peaks genome_build hg38 cell_type Thyroid biosample_type Primary tissue biosample_term_id UBERON:0002046 tissue_category Endocrine encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed bed3 file_size 1,032,000 downloaded_date 03/12/2021 release_date 10/12/2018 date_added_to_filer 01/19/2023 processed_file_download_url https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/98715.CEEHRC.CEMT0131.H3K4me1.peak_calls.bed.gz processed_file_md5 0fef1ac7a3fdc86c998aa4fb45e9f18c wget_command wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/98715.CEEHRC.CEMT0131.H3K4me1.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/98715.CEEHRC.CEMT0131.H3K4me1.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/ link_out_url https://ihec-epigenomes.org/ raw_file_url https://epigenomesportal.ca/tracks/CEEHRC/hg38/98715.CEEHRC.CEMT0131.H3K4me1.peak_calls.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/IHEC/CEEHRC/98715.CEEHRC.CEMT0131.H3K4me1.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/CEEHRC/ raw_file_md5 2f803a4f358a6d1ee5e6ec8f25110f2f data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=build 2020-10;Original_cell_type=Thyroid;ID=CEMT0131;disease=Thyroid Goiter;donor_id=SW-TTP-163;donor_age=37;donor_sex=Female;sample_ontology=https://purl.obolibrary.org/obo/UBERON_0002046;schema=BED3;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/CEEHRC.html;original_biosample_term_id=UBERON_0002046;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name CEEHRC Thyroid ChIP-seq H3K4me1-histone-mark peaks (bed3) [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Thyroid NGCEEZFW3TRMKG • CEEHRC27863956 ChIP-seq Thyroid Histone Show metadata Download track Track metadata identifier NGCEEZFW3TRMKG data_source CEEHRC Download track Download number_of_intervals 151,739 bp_covered 151,227,605 output_type peaks genome_build hg38 cell_type Thyroid biosample_type Primary tissue biosample_term_id UBERON:0002046 tissue_category Endocrine encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed bed3 file_size 1,258,211 downloaded_date 03/12/2021 release_date 10/12/2018 date_added_to_filer 01/19/2023 processed_file_download_url https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/98734.CEEHRC.CEMT0132.H3K4me1.peak_calls.bed.gz processed_file_md5 afdae70a56ab1097ff1ae4eae4b135f9 wget_command wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/98734.CEEHRC.CEMT0132.H3K4me1.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/98734.CEEHRC.CEMT0132.H3K4me1.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/ link_out_url https://ihec-epigenomes.org/ raw_file_url https://epigenomesportal.ca/tracks/CEEHRC/hg38/98734.CEEHRC.CEMT0132.H3K4me1.peak_calls.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/IHEC/CEEHRC/98734.CEEHRC.CEMT0132.H3K4me1.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/CEEHRC/ raw_file_md5 1aeb4d05cbdf5641bae9468b5587c7eb data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=build 2020-10;Original_cell_type=Thyroid;ID=CEMT0132;disease=None;donor_id=SW-TTP-164;donor_age=37;donor_sex=Female;sample_ontology=https://purl.obolibrary.org/obo/UBERON_0002046;schema=BED3;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/CEEHRC.html;original_biosample_term_id=UBERON_0002046;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name CEEHRC Thyroid ChIP-seq H3K4me1-histone-mark peaks (bed3) [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Kidney NGCEEZLYP5Q6N4 • CEEHRC27863956 ChIP-seq Kidney Histone Show metadata Download track Track metadata identifier NGCEEZLYP5Q6N4 data_source CEEHRC Download track Download number_of_intervals 266,633 bp_covered 266,318,458 output_type peaks genome_build hg38 cell_type Kidney biosample_type Primary tissue biosample_term_id UBERON:0002113 tissue_category Urinary encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed bed5 file_size 3,277,776 downloaded_date 03/12/2021 release_date 10/19/2020 date_added_to_filer 03/06/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed5/hg38/83052.CEEHRC.MS002201.H3K4me1.peak_calls.bed.gz processed_file_md5 8d533241184315e6bdbbc2a41861e847 wget_command wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed5/hg38/83052.CEEHRC.MS002201.H3K4me1.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed5/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed5/hg38/83052.CEEHRC.MS002201.H3K4me1.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed5/hg38/ link_out_url https://ihec-epigenomes.org/ raw_file_url https://epigenomesportal.ca/tracks/CEEHRC/hg38/83052.CEEHRC.MS002201.H3K4me1.peak_calls.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/IHEC/CEEHRC/83052.CEEHRC.MS002201.H3K4me1.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/CEEHRC/ raw_file_md5 be79047160611cc580e8725f26b8dac8 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=build 2020-10;Original_cell_type=Kidney;ID=MS002201;disease=Renal Cancer;donor_id=McGill0022;donor_age=54;donor_sex=Female;sample_ontology=https://purl.obolibrary.org/obo/UBERON_0002113;schema=BED5;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/CEEHRC.html;original_biosample_term_id=UBERON_0002113;is_hg38_lifted=no system_category Renal life_stage Adult track_name CEEHRC Kidney ChIP-seq H3K4me1-histone-mark peaks (bed5) [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Basal cell NGCEEZWEUV4UEQ • CEEHRC27863956 ChIP-seq Basal cell Histone Show metadata Download track Track metadata identifier NGCEEZWEUV4UEQ data_source CEEHRC Download track Download number_of_intervals 186,957 bp_covered 152,749,135 output_type peaks genome_build hg38 cell_type Basal cell biosample_type Primary cell biosample_term_id CL:0000646 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed bed3 file_size 1,514,355 downloaded_date 03/12/2021 release_date 10/11/2018 date_added_to_filer 01/19/2023 processed_file_download_url https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/97171.CEEHRC.CEMT0035.H3K4me1.peak_calls.bed.gz processed_file_md5 2ba850967f6959a92da96b3250551de6 wget_command wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/97171.CEEHRC.CEMT0035.H3K4me1.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/97171.CEEHRC.CEMT0035.H3K4me1.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_CEEHRC/ChIP-seq/bed3/hg38/ link_out_url https://ihec-epigenomes.org/ raw_file_url https://epigenomesportal.ca/tracks/CEEHRC/hg38/97171.CEEHRC.CEMT0035.H3K4me1.peak_calls.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/IHEC/CEEHRC/97171.CEEHRC.CEMT0035.H3K4me1.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/CEEHRC/ raw_file_md5 5c820a75050bcb453bdabe7246c5e5e2 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=build 2020-10;Original_cell_type=Basal cells;ID=CEMT0035;disease=None;donor_id=CEMT_35-38_pool;donor_age=NA;donor_sex=Female;sample_ontology=https://purl.obolibrary.org/obo/UBERON_0000310;schema=BED3;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/CEEHRC.html;original_biosample_term_id=UBERON_0000310;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name CEEHRC Basal cell ChIP-seq H3K4me1-histone-mark peaks (bed3) [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • A549 NGENC23D7EI7GX • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq A549 Histone Show metadata Download track Track metadata identifier NGENC23D7EI7GX data_source ENCODE Download track Download number_of_intervals 82,239 bp_covered 84,466,479 output_type replicated peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR225AOO biological_replicate 1, 3 technical_replicate 1_1, 3_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,209,805 downloaded_date 07/10/2025 release_date 11/13/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF435CPJ.bed.gz processed_file_md5 0b43f8910b1d3a67f023470e8c720948 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF435CPJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF435CPJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF435CPJ/@@download/ENCFF435CPJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF435CPJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 cc01bfcdd851c4b4a0fd3ea337abeafa data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 5 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91223;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=rep1_vs_rep3.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;Bio_rep=1, 2, 3;Tech_rep=1_1, 2_1, 3_1;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1, 3) Histone ChIP-seq H3K4me1 replicated peaks (narrowPeak) [Experiment: ENCSR225AOO] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Psoas muscle NGENC24FKGQ25D • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Psoas muscle Histone Show metadata Download track Track metadata identifier NGENC24FKGQ25D data_source ENCODE Download track Download number_of_intervals 108,850 bp_covered 114,738,042 output_type pseudoreplicated peaks genome_build hg38 cell_type Psoas muscle biosample_type Tissue biosample_term_id UBERON:0008450 tissue_category Skeletal Muscle encode_experiment_id ENCSR532BDE biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,538,494 downloaded_date 06/12/2022 release_date 06/06/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF390GTJ.bed.gz processed_file_md5 e58d5484f41eecda61132278138c39d9 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF390GTJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF390GTJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF390GTJ/@@download/ENCFF390GTJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF390GTJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 65a354a449cfa8a900b27742dd10117c data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens psoas muscle tissue female adult (41 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 41 years;Reference=NR;External_resources=GEO:GSE208925;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-06-09,2022-06-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=psoas muscle;ENCODE_cell_slims=NR;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=psoas;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0008450;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Muscular life_stage Adult track_name ENCODE Psoas muscle (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR532BDE] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Thyroid gland NGENC24GF6QTCZ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Thyroid gland Histone Show metadata Download track Track metadata identifier NGENC24GF6QTCZ data_source ENCODE Download track Download number_of_intervals 1 bp_covered 967 output_type replicated peaks genome_build hg38 cell_type Thyroid gland biosample_type Tissue biosample_term_id UBERON:0002046 tissue_category Endocrine encode_experiment_id ENCSR639NMN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 166 downloaded_date 06/12/2022 release_date 10/29/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF715RMV.bed.gz processed_file_md5 3f9be29020f214a12c8fb5a7b34ea100 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF715RMV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF715RMV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF715RMV/@@download/ENCFF715RMV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF715RMV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 68836d0687962caf4c54716df051e184 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens thyroid gland tissue male adult (54 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2,ENTEx;Life_stage_age=adult 54 years;Reference=PMID:32728046;External_resources=GEO:GSE96282;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-05-23;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=thyroid gland;ENCODE_cell_slims=NR;ENCODE_system_slims=endocrine system;ENCODE_biosample_term_synonyms=thyroid;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002046;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Endocrine life_stage Adult track_name ENCODE Thyroid gland (repl. 1, 2) Histone ChIP-seq H3K4me1 replicated peaks (narrowPeak) [Experiment: ENCSR639NMN] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • H9 NGENC2577YZOLF • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq H9 Histone Show metadata Download track Track metadata identifier NGENC2577YZOLF data_source ENCODE Download track Download number_of_intervals 341,632 bp_covered 178,844,642 output_type pseudoreplicated peaks genome_build hg38 cell_type H9 biosample_type Stem cell biosample_term_id EFO:0003045 tissue_category Embryo encode_experiment_id ENCSR243FOM biological_replicate 1 technical_replicate 1_1, 1_2, 1_3, 1_4 antibody H3K4me1 assay Mint-ChIP-seq file_format bed narrowPeak file_size 9,726,111 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF836LGN.bed.gz processed_file_md5 388f8b1bb40377d78e6bb38dd2121c23 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF836LGN.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF836LGN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF836LGN/@@download/ENCFF836LGN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF836LGN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ea10629d36ee72f625068f97bdd75291 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE176847;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-09-06,2020-07-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H9;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003045;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H9 (repl. 1) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR243FOM] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me1 • H9 NGENC26LZKHYZY • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq H9 Histone Show metadata Download track Track metadata identifier NGENC26LZKHYZY data_source ENCODE Download track Download number_of_intervals 307,949 bp_covered 178,502,725 output_type pseudoreplicated peaks genome_build hg38 cell_type H9 biosample_type Stem cell biosample_term_id EFO:0003045 tissue_category Embryo encode_experiment_id ENCSR352HOU biological_replicate 2 technical_replicate 2_1, 2_2 antibody H3K4me1 assay Mint-ChIP-seq file_format bed narrowPeak file_size 8,464,816 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF430GXS.bed.gz processed_file_md5 4e35f9fa6528fd5d13ae9604cd4c9bc7 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF430GXS.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF430GXS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF430GXS/@@download/ENCFF430GXS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF430GXS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f0bc92bd795aa77dfc31c0177d0dd289 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE177239;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-09-06,2020-09-08;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H9;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003045;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H9 (repl. 2) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR352HOU] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me1 • CD8+ alpha-beta memory cell NGENC26NTRMBUL • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq CD8+ alpha-beta memory cell Histone Show metadata Download track Track metadata identifier NGENC26NTRMBUL data_source ENCODE Download track Download number_of_intervals 69,339 bp_covered 73,213,055 output_type pseudoreplicated peaks genome_build hg38 cell_type CD8+ alpha-beta memory cell biosample_type Primary cell biosample_term_id CL:0000909 tissue_category Blood encode_experiment_id ENCSR372MTE biological_replicate 2 technical_replicate 2_3 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,686,985 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF141ZIW.bed.gz processed_file_md5 ea2b3985787cb7f76136e518de386192 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF141ZIW.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF141ZIW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF141ZIW/@@download/ENCFF141ZIW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF141ZIW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 eca4f4920773b306c21d46095afa1589 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens CD8-positive, alpha-beta memory T cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM772933,GEO:GSM772873;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=false;ENCODE_biosample_term_name=CD8-positive, alpha-beta memory T cell;ENCODE_cell_slims=T cell,CD8+ T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=CD8-positive, alpha-beta memory T-lymphocyte,CD8-positive, alpha-beta memory T-cell,CD8-positive, alpha-beta memory T lymphocyte;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000909;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE CD8+ alpha-beta memory cell (repl. 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR372MTE] [Histone ChIP-seq peaks]
H3K4me1 • CD14+ monocyte NGENC26RSPODUD • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq CD14+ monocyte Histone Show metadata Download track Track metadata identifier NGENC26RSPODUD data_source ENCODE Download track Download number_of_intervals 163,202 bp_covered 213,622,954 output_type pseudoreplicated peaks genome_build hg38 cell_type CD14+ monocyte biosample_type Primary cell biosample_term_id CL:0001054 tissue_category Blood encode_experiment_id ENCSR162RMW biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K4me1 assay Mint-ChIP-seq file_format bed narrowPeak file_size 4,689,503 downloaded_date 06/12/2022 release_date 03/13/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF924MBC.bed.gz processed_file_md5 698753735ed670c3e2a155e59f0020bd wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF924MBC.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF924MBC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF924MBC/@@download/ENCFF924MBC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF924MBC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2f68abff4767495e4c7cb931d0c294a4 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens CD14-positive monocyte male adult (51 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 51 years;Reference=NR;External_resources=GEO:GSE209093;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-03-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=CD14-positive monocyte;ENCODE_cell_slims=leukocyte,myeloid cell,monocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0001054;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE CD14+ monocyte (repl. 1) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR162RMW] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • T-cell NGENC27JPEE7QN • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq T-cell Histone Show metadata Download track Track metadata identifier NGENC27JPEE7QN data_source ENCODE Download track Download number_of_intervals 274,290 bp_covered 172,462,396 output_type pseudoreplicated peaks genome_build hg38 cell_type T-cell biosample_type Primary cell biosample_term_id CL:0000084 tissue_category Blood encode_experiment_id ENCSR957LLW biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K4me1 assay Mint-ChIP-seq file_format bed narrowPeak file_size 6,892,266 downloaded_date 06/12/2022 release_date 09/15/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF462IJE.bed.gz processed_file_md5 eebf704be0d0fa8899e80dced5a27c14 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF462IJE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF462IJE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF462IJE/@@download/ENCFF462IJE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF462IJE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4d7029f7835e9c87907610d6086a1142 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens activated T-cell male adult (42 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 42 years;Reference=NR;External_resources=GEO:GSE188192;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-09-27,2021-04-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=activated T-cell;ENCODE_cell_slims=T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0000537;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE T-cell (repl. 1) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR957LLW] [Life stage: Adult] [Histone ChIP-seq peaks]