H3K4me1 • H9 NGENC3W2TR26IE • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H9 Histone Show metadata Download track Track metadata identifier NGENC3W2TR26IE data_source ENCODE Download track Download number_of_intervals 29,849 bp_covered 14,593,003 output_type pseudoreplicated peaks genome_build hg38 cell_type H9 biosample_type Stem cell biosample_term_id EFO:0003045 tissue_category Embryo encode_experiment_id ENCSR967HXD biological_replicate 2 technical_replicate 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 665,883 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF119LAO.bed.gz processed_file_md5 4419928823daca122145602a94c497ee wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF119LAO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF119LAO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF119LAO/@@download/ENCFF119LAO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF119LAO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 77210bd4ac9ddf575c6cf1c075966485 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H9 stably expressing HES5;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSE96497;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-05-20,2015-08-03;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H9;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003045;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H9 (repl. 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR967HXD] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me1 • Neural crest cell NGENC3W2UIPM3O • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Neural crest cell Histone Show metadata Download track Track metadata identifier NGENC3W2UIPM3O data_source ENCODE Download track Download number_of_intervals 242,163 bp_covered 206,526,154 output_type pseudoreplicated peaks genome_build hg38 cell_type Neural crest cell biosample_type In vitro differentiated cells biosample_term_id CL:0011012 tissue_category Embryo encode_experiment_id ENCSR700DCY biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1, 2_2 antibody H3K4me1 assay Mint-ChIP-seq file_format bed narrowPeak file_size 7,152,718 downloaded_date 06/12/2022 release_date 07/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF801NTV.bed.gz processed_file_md5 e15dec3b40f9c2a3d1b0c0c1821d5850 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF801NTV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF801NTV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF801NTV/@@download/ENCFF801NTV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF801NTV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d503afbe3805057f78e4c8f058780020 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens neural crest cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE177489;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-14,2021-04-28;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=neural crest cell;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0011012;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Neural crest cell (repl. 1, 2) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR700DCY] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me1 • Spleen NGENC3XQUFX2KE • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Spleen Histone Show metadata Download track Track metadata identifier NGENC3XQUFX2KE data_source ENCODE Download track Download number_of_intervals 122,529 bp_covered 212,118,532 output_type pseudoreplicated peaks genome_build hg38 cell_type Spleen biosample_type Tissue biosample_term_id UBERON:0002106 tissue_category Immune Organ encode_experiment_id ENCSR635IRN biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1, 2_2 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,149,873 downloaded_date 06/12/2022 release_date 09/22/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF974LCT.bed.gz processed_file_md5 710a9acac8bc4921af166213156de411 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF974LCT.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF974LCT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF974LCT/@@download/ENCFF974LCT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF974LCT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7d25fb1b310a26db0cad10a40dd6dbbf data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens spleen tissue male adult (54 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx;Life_stage_age=adult 54 years;Reference=NR;External_resources=GEO:GSE143040;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2019-09-11,2019-02-08;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=spleen;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system,immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002106;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE Spleen (repl. 1, 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR635IRN] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • iPS-20b NGENC3XXFDPBJE • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq iPS-20b Histone Show metadata Download track Track metadata identifier NGENC3XXFDPBJE data_source ENCODE Download track Download number_of_intervals 132,265 bp_covered 117,015,870 output_type pseudoreplicated peaks genome_build hg38 cell_type iPS-20b biosample_type Cell line biosample_term_id EFO:0007108 tissue_category iPSC encode_experiment_id ENCSR996FWI biological_replicate 1 technical_replicate 1_4 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,176,347 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF667YSP.bed.gz processed_file_md5 b05da3c196b5413545f4ba3b0c61ea58 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF667YSP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF667YSP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF667YSP/@@download/ENCFF667YSP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF667YSP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8d389e244bf065147f0414dc8123f7c4 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens iPS-20b;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 55 years;Reference=PMID:32728046;External_resources=GEO:GSM772845,GEO:GSM772804;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=iPS-20b;ENCODE_cell_slims=induced pluripotent stem cell,stem cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007108;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Stem Cell life_stage Adult track_name ENCODE iPS-20b (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR996FWI] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • T-cell NGENC3YM35CT3F • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq T-cell Histone Show metadata Download track Track metadata identifier NGENC3YM35CT3F data_source ENCODE Download track Download number_of_intervals 320,055 bp_covered 219,839,243 output_type replicated peaks genome_build hg38 cell_type T-cell biosample_type Primary cell biosample_term_id CL:0000084 tissue_category Blood encode_experiment_id ENCSR677RWJ biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1, 2_2 antibody H3K4me1 assay Mint-ChIP-seq file_format bed narrowPeak file_size 8,893,367 downloaded_date 06/12/2022 release_date 05/06/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF993WJH.bed.gz processed_file_md5 df03ce29cc028bffcc6df00b7c9c68fe wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF993WJH.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF993WJH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF993WJH/@@download/ENCFF993WJH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF993WJH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ea5220fcad17f3681c83b4b03272b142 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens activated T-cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 38 years;Reference=NR;External_resources=GEO:GSE177749;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-09-02,2020-08-04;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=activated T-cell;ENCODE_cell_slims=T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0000537;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE T-cell (repl. 1, 2) Mint-ChIP-seq H3K4me1-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR677RWJ] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Mesenchymal stem cell NGENC423CUUABM • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mesenchymal stem cell Histone Show metadata Download track Track metadata identifier NGENC423CUUABM data_source ENCODE Download track Download number_of_intervals 217,724 bp_covered 252,563,668 output_type pseudoreplicated peaks genome_build hg38 cell_type Mesenchymal stem cell biosample_type Stem cell biosample_term_id CL:0000134 tissue_category Connective Tissue encode_experiment_id ENCSR196LEI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 5,869,174 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF463PJL.bed.gz processed_file_md5 3a2f40fa17dff5a034902ac540e718e1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF463PJL.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF463PJL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF463PJL/@@download/ENCFF463PJL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF463PJL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8fe7058e6b9269c64cc3395e7e92a5b6 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens mesenchymal stem cell female adult and female adult (41 years) and female adult (59 years), originated from adipose tissue;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM621418,GEO:GSM772748,GEO:GSM772762;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=mesenchymal stem cell;ENCODE_cell_slims=stem cell,connective tissue cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000134;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Skeletal life_stage Adult track_name ENCODE Mesenchymal stem cell (repl. 1, 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR196LEI] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • OCI-LY1 NGENC45RSY6VZE • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq OCI-LY1 Histone Show metadata Download track Track metadata identifier NGENC45RSY6VZE data_source ENCODE Download track Download number_of_intervals 80,325 bp_covered 120,686,585 output_type pseudoreplicated peaks genome_build hg38 cell_type OCI-LY1 biosample_type Cell line biosample_term_id EFO:0005907 tissue_category Immune encode_experiment_id ENCSR184QUS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,279,383 downloaded_date 06/12/2022 release_date 10/29/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF834DZM.bed.gz processed_file_md5 85c3eb1b682578d146cc21e0b8840c0f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF834DZM.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF834DZM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF834DZM/@@download/ENCFF834DZM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF834DZM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 385fa527120ed013e1be3c18cc7c2802 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens OCI-LY1;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 44 years;Reference=PMID:32728046;External_resources=GEO:GSE86684;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=OCI-LY1;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005907;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE OCI-LY1 (repl. 1, 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR184QUS] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Natural killer cell NGENC46E3HZ53D • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Natural killer cell Histone Show metadata Download track Track metadata identifier NGENC46E3HZ53D data_source ENCODE Download track Download number_of_intervals 198,367 bp_covered 156,806,179 output_type pseudoreplicated peaks genome_build hg38 cell_type Natural killer cell biosample_type Primary cell biosample_term_id CL:0000623 tissue_category Blood encode_experiment_id ENCSR825ZXY biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K4me1 assay Mint-ChIP-seq file_format bed narrowPeak file_size 5,410,043 downloaded_date 06/12/2022 release_date 05/06/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF439DUD.bed.gz processed_file_md5 ce0517d1f58903d87ec0339355b2abb0 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF439DUD.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF439DUD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF439DUD/@@download/ENCFF439DUD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF439DUD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d11d7a98bdc693ec02888f52780b8c0c data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens immature natural killer cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=YaleImmuneCells;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE177863;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-09-06,2020-08-04;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=immature natural killer cell;ENCODE_cell_slims=NK cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=immature NK cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000823;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE Natural killer cell (repl. 1) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR825ZXY] [Histone ChIP-seq peaks]
H3K4me1 • Mononuclear cell NGENC46ENWHHTC • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mononuclear cell Histone Show metadata Download track Track metadata identifier NGENC46ENWHHTC data_source ENCODE Download track Download number_of_intervals 100,213 bp_covered 130,194,397 output_type replicated peaks genome_build hg38 cell_type Mononuclear cell biosample_type Primary cell biosample_term_id CL:0000842 tissue_category Blood encode_experiment_id ENCSR000EXV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,600,768 downloaded_date 06/12/2022 release_date 10/29/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF068SAT.bed.gz processed_file_md5 43eaf89e2c875782f7902ba617ea013a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF068SAT.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF068SAT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF068SAT/@@download/ENCFF068SAT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF068SAT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 fb324410dc615e8abc274b469218ba36 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens mononuclear cell male;Lab=Peggy Farnham, USC;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM788084,UCSC-ENCODE-hg19:wgEncodeEH001747;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-07;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=mononuclear cell;ENCODE_cell_slims=leukocyte,mononuclear cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=mononuclear leukocyte;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000842;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE Mononuclear cell (repl. 1, 2) Histone ChIP-seq H3K4me1 replicated peaks (narrowPeak) [Experiment: ENCSR000EXV] [Histone ChIP-seq peaks]
H3K4me1 • BLaER1 NGENC46GBIVQZ4 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENC46GBIVQZ4 data_source ENCODE Download track Download number_of_intervals 133,831 bp_covered 227,571,882 output_type pseudoreplicated peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR659KFN biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,565,441 downloaded_date 05/15/2024 release_date 02/26/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF658QVM.bed.gz processed_file_md5 9fd4f9db844c03eb9c27ed9f78a39b03 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF658QVM.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF658QVM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF658QVM/@@download/ENCFF658QVM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF658QVM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6720af39cec1df405b6d7e7841d19d4a data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 12 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE258679;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR659KFN] [Histone ChIP-seq peaks]
H3K4me1 • Thyroid gland NGENC46RHGPPTD • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Thyroid gland Histone Show metadata Download track Track metadata identifier NGENC46RHGPPTD data_source ENCODE Download track Download number_of_intervals 6,630 bp_covered 4,014,571 output_type pseudoreplicated peaks genome_build hg38 cell_type Thyroid gland biosample_type Tissue biosample_term_id UBERON:0002046 tissue_category Endocrine encode_experiment_id ENCSR906YES biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 143,767 downloaded_date 06/12/2022 release_date 10/30/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF177LYF.bed.gz processed_file_md5 e5f92e1c3b04d0a9e8ff1a42ab2498dd wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF177LYF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF177LYF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF177LYF/@@download/ENCFF177LYF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF177LYF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 36520effa6e4ca28fc5aa45ba8bc0629 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens thyroid gland tissue male adult (37 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2,ENTEx;Life_stage_age=adult 37 years;Reference=PMID:32728046;External_resources=GEO:GSE96464;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-05-23;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=thyroid gland;ENCODE_cell_slims=NR;ENCODE_system_slims=endocrine system;ENCODE_biosample_term_synonyms=thyroid;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002046;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Endocrine life_stage Adult track_name ENCODE Thyroid gland (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR906YES] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • A549 NGENC46YIHV5YR • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq A549 Histone Show metadata Download track Track metadata identifier NGENC46YIHV5YR data_source ENCODE Download track Download number_of_intervals 118,447 bp_covered 133,114,856 output_type replicated peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR593RGY biological_replicate 1, 3 technical_replicate 1_1, 3_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,183,428 downloaded_date 07/10/2025 release_date 11/13/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF140NRO.bed.gz processed_file_md5 6bb1cc3ff312dabda07313fd512d0b6d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF140NRO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF140NRO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF140NRO/@@download/ENCFF140NRO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF140NRO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c17af68870a4df539e349487993c1f7e data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 0.5 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91294;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=rep1_vs_rep3.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;Bio_rep=1, 2, 3;Tech_rep=1_1, 2_1, 3_1;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1, 3) Histone ChIP-seq H3K4me1 replicated peaks (narrowPeak) [Experiment: ENCSR593RGY] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Neuroepithelial stem cell NGENC46ZR4VHGT • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Neuroepithelial stem cell Histone Show metadata Download track Track metadata identifier NGENC46ZR4VHGT data_source ENCODE Download track Download number_of_intervals 29,175 bp_covered 17,116,314 output_type pseudoreplicated peaks genome_build hg38 cell_type Neuroepithelial stem cell biosample_type In vitro differentiated cells biosample_term_id CL:0002259 tissue_category Embryo encode_experiment_id ENCSR890NXD biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 655,203 downloaded_date 06/12/2022 release_date 10/29/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF859XWF.bed.gz processed_file_md5 d159c259273afa447a6c4d0b81e276ce wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF859XWF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF859XWF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF859XWF/@@download/ENCFF859XWF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF859XWF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e3223951928cdcfa203d80a83641c8d2 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens neuroepithelial stem cell stably expressing HES5 originated from H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSE96451;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-05-20,2015-08-03;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=neuroepithelial stem cell;ENCODE_cell_slims=stem cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002259;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Neuroepithelial stem cell (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR890NXD] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me1 • Transverse colon NGENC47WXPKJ2Z • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Transverse colon Histone Show metadata Download track Track metadata identifier NGENC47WXPKJ2Z data_source ENCODE Download track Download number_of_intervals 20,415 bp_covered 8,681,664 output_type pseudoreplicated peaks genome_build hg38 cell_type Transverse colon biosample_type Tissue biosample_term_id UBERON:0001157 tissue_category Digestive encode_experiment_id ENCSR500QVK biological_replicate 2 technical_replicate 2_1, 2_2 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 433,577 downloaded_date 06/12/2022 release_date 09/23/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF299VOQ.bed.gz processed_file_md5 03016287e92780c9d68496bd4446eeb0 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF299VOQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF299VOQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF299VOQ/@@download/ENCFF299VOQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF299VOQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d68070d569aa9fd8ff2a5eb505fa17f4 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens transverse colon tissue female adult (51 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx;Life_stage_age=adult 51 years;Reference=PMCID:PMC7343189;External_resources=GEO:GSE142993;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2018-12-14;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=transverse colon;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=colon transversum;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001157;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE Transverse colon (repl. 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR500QVK] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Common myeloid progenitor cell NGENC4BRNHN4VL • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Common myeloid progenitor cell Histone Show metadata Download track Track metadata identifier NGENC4BRNHN4VL data_source ENCODE Download track Download number_of_intervals 108,898 bp_covered 69,944,472 output_type pseudoreplicated peaks genome_build hg38 cell_type Common myeloid progenitor cell biosample_type Primary cell biosample_term_id NCIT:C12552 tissue_category Blood encode_experiment_id ENCSR170NCG biological_replicate 2 technical_replicate 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,359,296 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF978URT.bed.gz processed_file_md5 94a7b76ae5011a99c8770427a19c3303 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF978URT.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF978URT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF978URT/@@download/ENCFF978URT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF978URT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0770be7876f5a960788495cc98555844 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens common myeloid progenitor, CD34-positive;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM537628,GEO:GSM669907;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=common myeloid progenitor, CD34-positive;ENCODE_cell_slims=myeloid cell,hematopoietic cell,progenitor cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=common myeloid precursor, CD34-positive;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0001059;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE Common myeloid progenitor cell (repl. 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR170NCG] [Histone ChIP-seq peaks]
H3K4me1 • Naive thymus-derived CD4+ alpha-beta T cell NGENC4CD2WADP6 • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Naive thymus-derived CD4+ alpha-beta T cell Histone Show metadata Download track Track metadata identifier NGENC4CD2WADP6 data_source ENCODE Download track Download number_of_intervals 200,965 bp_covered 206,755,886 output_type pseudoreplicated peaks genome_build hg38 cell_type Naive thymus-derived CD4+ alpha-beta T cell biosample_type Primary cell biosample_term_id CL:0000895 tissue_category Blood encode_experiment_id ENCSR687CQX biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K4me1 assay Mint-ChIP-seq file_format bed narrowPeak file_size 5,606,643 downloaded_date 06/12/2022 release_date 05/06/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF466YDB.bed.gz processed_file_md5 3fbd7d29c844c0b3bfe4c17a9434b121 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF466YDB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF466YDB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF466YDB/@@download/ENCFF466YDB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF466YDB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7e2cb902dcfa63613abda0a52984ca8b data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens with multiple sclerosis| naive thymus-derived CD4-positive, alpha-beta T cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=YaleImmuneCells;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE177768;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-09-06,2020-08-04;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=naive thymus-derived CD4-positive, alpha-beta T cell;ENCODE_cell_slims=T cell,leukocyte,CD4+ T cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=naive thymus-derived CD4-positive, alpha-beta T lymphocyte,Th0,naive thymus-derived CD4-positive, alpha-beta T-cell,naive thymus-derived CD4-positive, alpha-beta T-lymphocyte,T.4Nve.Sp;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000895;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE Naive thymus-derived CD4+ alpha-beta T cell (repl. 1) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR687CQX] [Histone ChIP-seq peaks]
H3K4me1 • Cingulate gyrus NGENC4DUHA5N7N • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Cingulate gyrus Histone Show metadata Download track Track metadata identifier NGENC4DUHA5N7N data_source ENCODE Download track Download number_of_intervals 99,927 bp_covered 57,854,675 output_type pseudoreplicated peaks genome_build hg38 cell_type Cingulate gyrus biosample_type Tissue biosample_term_id UBERON:0002967 tissue_category Brain encode_experiment_id ENCSR117IJB biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,122,420 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF167NAJ.bed.gz processed_file_md5 b3cb81fd8ec6d98b4bb8a335b590117b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF167NAJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF167NAJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF167NAJ/@@download/ENCFF167NAJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF167NAJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 49322ca91b7e5c22a88a677fc5b8812d data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens cingulate gyrus tissue female adult (75 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=adult 75 years;Reference=PMID:32728046;External_resources=GEO:GSM670033;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=cingulate gyrus;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=upper limbic gyrus,cingulate area,cingulate region,falciform lobe;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002967;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Cingulate gyrus (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR117IJB] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Adipose NGENC4E4W2GZDB • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Adipose Histone Show metadata Download track Track metadata identifier NGENC4E4W2GZDB data_source ENCODE Download track Download number_of_intervals 47,382 bp_covered 15,617,909 output_type pseudoreplicated peaks genome_build hg38 cell_type Adipose biosample_type Tissue biosample_term_id NCIT:C12472 tissue_category Adipose encode_experiment_id ENCSR664RRY biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 890,308 downloaded_date 06/12/2022 release_date 01/29/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF713GGK.bed.gz processed_file_md5 7772c43baaff398285eb6443ccc6af1d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF713GGK.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF713GGK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF713GGK/@@download/ENCFF713GGK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF713GGK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b71a5ab94367c543f9f09da3892b984d data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (49 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 49 years;Reference=PMID:32728046;External_resources=GEO:GSM621425;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=subcutaneous abdominal adipose tissue;ENCODE_cell_slims=NR;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=subcutaneous fat of abdominal region,subcutaneous abdominal fat,abdominal subcutaneous adipose tissue;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0014455;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Adult track_name ENCODE Adipose (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR664RRY] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Skeletal muscle satellite cell NGENC4EWZRXIL6 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Skeletal muscle satellite cell Histone Show metadata Download track Track metadata identifier NGENC4EWZRXIL6 data_source ENCODE Download track Download number_of_intervals 162,059 bp_covered 152,682,921 output_type pseudoreplicated peaks genome_build hg38 cell_type Skeletal muscle satellite cell biosample_type Primary cell biosample_term_id CL:0000594 tissue_category Skeletal Muscle encode_experiment_id ENCSR023MFG biological_replicate 1, 3 technical_replicate 1_1, 3_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 4,416,288 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF049FWI.bed.gz processed_file_md5 cc7dbdc0ba6b8c3b20e4e02c3b0cb707 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF049FWI.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF049FWI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF049FWI/@@download/ENCFF049FWI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF049FWI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e97b4a98d49e17b0d49c7f4c387cfcee data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens skeletal muscle satellite cell female adult originated from mesodermal cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM621752,GEO:GSM621741,GEO:GSM621759;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=skeletal muscle satellite cell;ENCODE_cell_slims=NR;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000594;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Muscular life_stage Adult track_name ENCODE Skeletal muscle satellite cell (repl. 1, 3) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR023MFG] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • CD4+ alpha-beta T cell NGENC4FQT5IO57 • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq CD4+ alpha-beta T cell Histone Show metadata Download track Track metadata identifier NGENC4FQT5IO57 data_source ENCODE Download track Download number_of_intervals 252,273 bp_covered 181,118,389 output_type pseudoreplicated peaks genome_build hg38 cell_type CD4+ alpha-beta T cell biosample_type Primary cell biosample_term_id CL:0000624 tissue_category Blood encode_experiment_id ENCSR731VYK biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K4me1 assay Mint-ChIP-seq file_format bed narrowPeak file_size 6,864,556 downloaded_date 06/12/2022 release_date 05/06/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF024BHQ.bed.gz processed_file_md5 c0bc644b5f9b675612940354fe9a290c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF024BHQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF024BHQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF024BHQ/@@download/ENCFF024BHQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF024BHQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 64bf76cd2ac3ca67a607fb073f466469 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 20 years;Reference=NR;External_resources=GEO:GSE177579;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-14,2021-04-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=activated CD4-positive, alpha-beta T cell;ENCODE_cell_slims=T cell,leukocyte,CD4+ T cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=activated CD4-positive, alpha-beta T lymphocyte,activated CD4-positive, alpha-beta T-cell,activated CD4-positive, alpha-beta T-lymphocyte;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000896;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE CD4+ alpha-beta T cell (repl. 1) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR731VYK] [Life stage: Adult] [Histone ChIP-seq peaks]