CHD1 • H1-hESC NGFTB4W3TZLRDB • Factorbook34755879 Motif finding H1-hESC TFBS Show metadata Download track Track metadata identifier NGFTB4W3TZLRDB data_source Factorbook Download track Download number_of_intervals 570 bp_covered 7,980 output_type transcription factor binding sites all genome_build hg38 cell_type H1-hESC biosample_type Cell line biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000EBU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHD1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 9,653 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF731EYW_YGGRMBRTACCAHY_sorted.bed.gz processed_file_md5 3dbcbb90851f2c344898cba21a3dc686 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF731EYW_YGGRMBRTACCAHY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF731EYW_YGGRMBRTACCAHY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF731EYW_YGGRMBRTACCAHY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF731EYW_YGGRMBRTACCAHY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3bcefa4a76679b7e9fc363f01c9e0c1b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens H1;Original_cell_type=H1;Lab=Michael Snyder, Stanford;System=NR;ENCODE_BED_id=ENCFF731EYW;ENCODE_bigBed_id=ENCFF128BID;PMID=34755879;Motif_sequence=YGGRMBRTACCAHY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook H1-hESC (repl. 1, 2) Motif finding CHD1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EBU] [TFBS]
CHD1 • GM12878 NGFTBKUVKF7JHS • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBKUVKF7JHS data_source Factorbook Download track Download number_of_intervals 3,418 bp_covered 95,704 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DZE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHD1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 74,792 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF753HYW_CCCCCCSSSBSSVVDTGGTACVGYCCRS_sorted.bed.gz processed_file_md5 30db007a7c8ae147baeb5a5f77dace51 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF753HYW_CCCCCCSSSBSSVVDTGGTACVGYCCRS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF753HYW_CCCCCCSSSBSSVVDTGGTACVGYCCRS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF753HYW_CCCCCCSSSBSSVVDTGGTACVGYCCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF753HYW_CCCCCCSSSBSSVVDTGGTACVGYCCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 52f0fb591bb1e953f2afbd4c5bdd3b68 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF753HYW;ENCODE_bigBed_id=ENCFF566UBH;PMID=34755879;Motif_sequence=CCCCCCSSSBSSVVDTGGTACVGYCCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding CHD1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DZE] [TFBS]
CHD1 • GM12878 NGFTBNEMLZKMYQ • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBNEMLZKMYQ data_source Factorbook Download track Download number_of_intervals 16 bp_covered 480 output_type transcription factor binding sites significant genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DZE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHD1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 712 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF753HYW_AWYAYCMAGGCYGTGSYVSYSYCYAAGRAG_filtered.bed.gz processed_file_md5 1767ffee699c32b20a02eb010325a6bb wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF753HYW_AWYAYCMAGGCYGTGSYVSYSYCYAAGRAG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF753HYW_AWYAYCMAGGCYGTGSYVSYSYCYAAGRAG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF753HYW_AWYAYCMAGGCYGTGSYVSYSYCYAAGRAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF753HYW_AWYAYCMAGGCYGTGSYVSYSYCYAAGRAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 48dcd2cb0c89549d54591863cd03b5d3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF753HYW;ENCODE_bigBed_id=ENCFF566UBH;PMID=34755879;Motif_sequence=AWYAYCMAGGCYGTGSYVSYSYCYAAGRAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding CHD1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DZE] [TFBS]
CHD1 • GM12878 NGFTBQ7VKIBH2C • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBQ7VKIBH2C data_source Factorbook Download track Download number_of_intervals 488 bp_covered 14,640 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DZE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHD1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 11,573 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF753HYW_AWYAYCMAGGCYGTGSYVSYSYCYAAGRAG_sorted.bed.gz processed_file_md5 940f0704fcfd6974547f6c4dc71d2e1f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF753HYW_AWYAYCMAGGCYGTGSYVSYSYCYAAGRAG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF753HYW_AWYAYCMAGGCYGTGSYVSYSYCYAAGRAG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF753HYW_AWYAYCMAGGCYGTGSYVSYSYCYAAGRAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF753HYW_AWYAYCMAGGCYGTGSYVSYSYCYAAGRAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 48dcd2cb0c89549d54591863cd03b5d3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF753HYW;ENCODE_bigBed_id=ENCFF566UBH;PMID=34755879;Motif_sequence=AWYAYCMAGGCYGTGSYVSYSYCYAAGRAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding CHD1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DZE] [TFBS]
CHD1 • GM12878 NGFTBWDTSGAWRU • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBWDTSGAWRU data_source Factorbook Download track Download number_of_intervals 50 bp_covered 1,400 output_type transcription factor binding sites significant genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DZE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHD1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,405 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF753HYW_CCCCCCSSSBSSVVDTGGTACVGYCCRS_filtered.bed.gz processed_file_md5 5878e43231a561eb2499721ea2b21299 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF753HYW_CCCCCCSSSBSSVVDTGGTACVGYCCRS_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF753HYW_CCCCCCSSSBSSVVDTGGTACVGYCCRS_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF753HYW_CCCCCCSSSBSSVVDTGGTACVGYCCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF753HYW_CCCCCCSSSBSSVVDTGGTACVGYCCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 52f0fb591bb1e953f2afbd4c5bdd3b68 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF753HYW;ENCODE_bigBed_id=ENCFF566UBH;PMID=34755879;Motif_sequence=CCCCCCSSSBSSVVDTGGTACVGYCCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding CHD1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DZE] [TFBS]
CHD2 • GM12878 NGENC2JPRMOAFM • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENC2JPRMOAFM data_source ENCODE Download track Download number_of_intervals 6,656 bp_covered 2,123,368 output_type IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DZR biological_replicate 2 technical_replicate 2_1 antibody CHD2 assay TF ChIP-seq file_format bed narrowPeak file_size 129,960 downloaded_date 06/12/2022 release_date 01/08/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF059NBM.bed.gz processed_file_md5 f6710d6786aea46916fd4696951b45fd wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF059NBM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF059NBM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF059NBM/@@download/ENCFF059NBM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF059NBM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8e495673feda0bed9700062ab7fdcb95 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM935378,UCSC-ENCODE-hg19:wgEncodeEH001831;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,B cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 2) TF ChIP-seq CHD2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DZR] [Life stage: Adult] [TF ChIP-seq peaks]
CHD2 • A549 NGENC3E532NLP6 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq A549 TF Show metadata Download track Track metadata identifier NGENC3E532NLP6 data_source ENCODE Download track Download number_of_intervals 3,050 bp_covered 835,502 output_type conservative IDR thresholded peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR067HGI biological_replicate 1, 3 technical_replicate 1_1, 3_1 antibody CHD2 assay TF ChIP-seq file_format bed narrowPeak file_size 59,853 downloaded_date 06/12/2022 release_date 12/09/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF730AOF.bed.gz processed_file_md5 88cb24128668712e76920e71f6165cb6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF730AOF.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF730AOF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF730AOF/@@download/ENCFF730AOF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF730AOF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4531ab9ce3c803162bb8b49d97283a62 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens A549;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE127380;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2014-07-07,2012-05-14;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A-549,A549 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1, 3) TF ChIP-seq CHD2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR067HGI] [Life stage: Adult] [TF ChIP-seq peaks]
CHD2 • HepG2 NGENC3N7XWXHYM • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENC3N7XWXHYM data_source ENCODE Download track Download number_of_intervals 3,026 bp_covered 822,172 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000EED biological_replicate 1 technical_replicate 1_1 antibody CHD2 assay TF ChIP-seq file_format bed narrowPeak file_size 59,252 downloaded_date 06/12/2022 release_date 12/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF785JUE.bed.gz processed_file_md5 44c7a1a22d7a0371ffe11631f6853cad wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF785JUE.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF785JUE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF785JUE/@@download/ENCFF785JUE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF785JUE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9d21ac5c17f33405fe0f35492e2972bc data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728244;External_resources=GEO:GSM935307,UCSC-ENCODE-hg19:wgEncodeEH001840;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) TF ChIP-seq CHD2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EED] [Life stage: Child] [TF ChIP-seq peaks]
CHD2 • A549 NGENC4QJYV6C4I • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq A549 TF Show metadata Download track Track metadata identifier NGENC4QJYV6C4I data_source ENCODE Download track Download number_of_intervals 3,429 bp_covered 947,187 output_type IDR thresholded peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR067HGI biological_replicate 1, 3 technical_replicate 1_1, 3_1 antibody CHD2 assay TF ChIP-seq file_format bed narrowPeak file_size 67,234 downloaded_date 06/12/2022 release_date 12/09/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF389RCI.bed.gz processed_file_md5 2989a37c30d7e3bf0a0cce10765aac8e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF389RCI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF389RCI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF389RCI/@@download/ENCFF389RCI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF389RCI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 194b584a47d30250e6996966e9184f37 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens A549;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE127380;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2014-07-07,2012-05-14;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A-549,A549 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1, 3) TF ChIP-seq CHD2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR067HGI] [Life stage: Adult] [TF ChIP-seq peaks]
CHD2 • H1-hESC NGENC4WANSWL7J • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq H1-hESC TF Show metadata Download track Track metadata identifier NGENC4WANSWL7J data_source ENCODE Download track Download number_of_intervals 8,636 bp_covered 2,677,836 output_type conservative IDR thresholded peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000EBT biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHD2 assay TF ChIP-seq file_format bed narrowPeak file_size 170,314 downloaded_date 06/12/2022 release_date 12/10/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF187EAW.bed.gz processed_file_md5 6a6bc0d767b91cdf38db13a03a1d484f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF187EAW.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF187EAW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF187EAW/@@download/ENCFF187EAW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF187EAW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1873c419fd581ffd10084f9ea7994a75 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32737473;External_resources=GEO:GSM935297,UCSC-ENCODE-hg19:wgEncodeEH002827;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2012-05-14,2011-10-29;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=embryonic cell,stem cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1, 2) TF ChIP-seq CHD2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EBT] [Life stage: Embryonic] [TF ChIP-seq peaks]
CHD2 • HepG2 NGENC4ZOOKT2RA • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENC4ZOOKT2RA data_source ENCODE Download track Download number_of_intervals 5,758 bp_covered 1,761,231 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000EED biological_replicate 2 technical_replicate 2_1 antibody CHD2 assay TF ChIP-seq file_format bed narrowPeak file_size 112,577 downloaded_date 06/12/2022 release_date 12/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF552NFJ.bed.gz processed_file_md5 1ef3ed174e6981600c6dcfb1f3eb948f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF552NFJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF552NFJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF552NFJ/@@download/ENCFF552NFJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF552NFJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ae7abad8588ce3e0cc068b73802282c6 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728244;External_resources=GEO:GSM935307,UCSC-ENCODE-hg19:wgEncodeEH001840;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) TF ChIP-seq CHD2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EED] [Life stage: Child] [TF ChIP-seq peaks]
CHD2 • HeLa-S3 NGENC5UHU3NGSR • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HeLa-S3 TF Show metadata Download track Track metadata identifier NGENC5UHU3NGSR data_source ENCODE Download track Download number_of_intervals 12,239 bp_covered 3,984,600 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000ECP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHD2 assay TF ChIP-seq file_format bed narrowPeak file_size 241,205 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF729AEW.bed.gz processed_file_md5 66bfe8f73c3cfd138f99472996797664 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF729AEW.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF729AEW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF729AEW/@@download/ENCFF729AEW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF729AEW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5ff3bb69de5de6343b035839193b3e43 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HeLa-S3;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 31 years;Reference=PMID:32728046;External_resources=GEO:GSM935432,UCSC-ENCODE-hg19:wgEncodeEH002027;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HeLa-S3;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE HeLa-S3 (repl. 1, 2) TF ChIP-seq CHD2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000ECP] [Life stage: Adult] [TF ChIP-seq peaks]
CHD2 • SK-N-SH NGENC5WHOLVGP2 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq SK-N-SH TF Show metadata Download track Track metadata identifier NGENC5WHOLVGP2 data_source ENCODE Download track Download number_of_intervals 12,468 bp_covered 4,008,453 output_type IDR thresholded peaks genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR274SLQ biological_replicate 1 technical_replicate 1_1 antibody CHD2 assay TF ChIP-seq file_format bed narrowPeak file_size 246,498 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF262BLX.bed.gz processed_file_md5 dd292172f338c774fbb6591e02da9ca2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF262BLX.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF262BLX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF262BLX/@@download/ENCFF262BLX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF262BLX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c26f168cfa38a4dc53d7b35fac11844d data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens SK-N-SH;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=child 4 years;Reference=NR;External_resources=GEO:GSE127552;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2014-07-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=SKNSH;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no system_category Nervous life_stage Child track_name ENCODE SK-N-SH (repl. 1) TF ChIP-seq CHD2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR274SLQ] [Life stage: Child] [TF ChIP-seq peaks]
CHD2 • GM12878 NGENC627TKXPLU • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENC627TKXPLU data_source ENCODE Download track Download number_of_intervals 14,283 bp_covered 5,430,808 output_type IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DZR biological_replicate 1 technical_replicate 1_1 antibody CHD2 assay TF ChIP-seq file_format bed narrowPeak file_size 258,819 downloaded_date 06/12/2022 release_date 01/08/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF621FXV.bed.gz processed_file_md5 ca0ccb29ca196bfc8ddcbd8535753f24 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF621FXV.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF621FXV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF621FXV/@@download/ENCFF621FXV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF621FXV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 94d897cb82d61c58d0477433690ad3f9 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM935378,UCSC-ENCODE-hg19:wgEncodeEH001831;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,B cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 1) TF ChIP-seq CHD2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DZR] [Life stage: Adult] [TF ChIP-seq peaks]
CHD2 • GM12878 NGENC6I6WSIZSU • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENC6I6WSIZSU data_source ENCODE Download track Download number_of_intervals 16,861 bp_covered 6,066,386 output_type conservative IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DZR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHD2 assay TF ChIP-seq file_format bed narrowPeak file_size 328,990 downloaded_date 06/12/2022 release_date 01/08/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF411PSE.bed.gz processed_file_md5 038b75b8bbda213d2f92f3d7469d5bc2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF411PSE.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF411PSE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF411PSE/@@download/ENCFF411PSE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF411PSE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9e87970f686848ad6ce1c117115b2f41 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM935378,UCSC-ENCODE-hg19:wgEncodeEH001831;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,B cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 1, 2) TF ChIP-seq CHD2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DZR] [Life stage: Adult] [TF ChIP-seq peaks]
CHD2 • SK-N-SH NGENC7VSCN2VIU • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq SK-N-SH TF Show metadata Download track Track metadata identifier NGENC7VSCN2VIU data_source ENCODE Download track Download number_of_intervals 23,669 bp_covered 7,939,652 output_type conservative IDR thresholded peaks genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR274SLQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHD2 assay TF ChIP-seq file_format bed narrowPeak file_size 470,284 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF058YDU.bed.gz processed_file_md5 94a182eb639fb4e39fcd98c8e61107a2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF058YDU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF058YDU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF058YDU/@@download/ENCFF058YDU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF058YDU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1624969e08cf932fd58584096b25be11 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens SK-N-SH;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=child 4 years;Reference=NR;External_resources=GEO:GSE127552;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2014-07-07;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=SKNSH;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no system_category Nervous life_stage Child track_name ENCODE SK-N-SH (repl. 1, 2) TF ChIP-seq CHD2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR274SLQ] [Life stage: Child] [TF ChIP-seq peaks]
CHD2 • A549 NGENC7ZMHMP67H • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq A549 TF Show metadata Download track Track metadata identifier NGENC7ZMHMP67H data_source ENCODE Download track Download number_of_intervals 1,934 bp_covered 522,202 output_type IDR thresholded peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR067HGI biological_replicate 1 technical_replicate 1_1 antibody CHD2 assay TF ChIP-seq file_format bed narrowPeak file_size 34,390 downloaded_date 06/12/2022 release_date 12/09/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF588SBU.bed.gz processed_file_md5 6ae6b8455f2890cd4ca0676ff38509d3 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF588SBU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF588SBU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF588SBU/@@download/ENCFF588SBU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF588SBU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5ae29221f3de0490e43cd48bf4b7e151 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens A549;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE127380;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2014-07-07,2012-05-14;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A-549,A549 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1) TF ChIP-seq CHD2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR067HGI] [Life stage: Adult] [TF ChIP-seq peaks]
CHD2 • HepG2 NGENCESUTG44YB • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCESUTG44YB data_source ENCODE Download track Download number_of_intervals 6,940 bp_covered 2,080,204 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000EED biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHD2 assay TF ChIP-seq file_format bed narrowPeak file_size 136,844 downloaded_date 06/12/2022 release_date 12/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF968LAV.bed.gz processed_file_md5 fd121ffe301eea907c031b7548c0bd91 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF968LAV.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF968LAV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF968LAV/@@download/ENCFF968LAV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF968LAV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8817e5e0c628ff5f696070c0b19f7769 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728244;External_resources=GEO:GSM935307,UCSC-ENCODE-hg19:wgEncodeEH001840;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq CHD2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EED] [Life stage: Child] [TF ChIP-seq peaks]
CHD2 • H1-hESC NGENCF5NSL53Z4 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq H1-hESC TF Show metadata Download track Track metadata identifier NGENCF5NSL53Z4 data_source ENCODE Download track Download number_of_intervals 5,031 bp_covered 1,538,322 output_type IDR thresholded peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000EBT biological_replicate 2 technical_replicate 2_1 antibody CHD2 assay TF ChIP-seq file_format bed narrowPeak file_size 97,933 downloaded_date 06/12/2022 release_date 12/10/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF793KFF.bed.gz processed_file_md5 0b3989fd4703b74fba0d6b30ff4ea6f6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF793KFF.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF793KFF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF793KFF/@@download/ENCFF793KFF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF793KFF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a1f41aaebac4d5b42fea0f592cacce9a data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32737473;External_resources=GEO:GSM935297,UCSC-ENCODE-hg19:wgEncodeEH002827;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2012-05-14,2011-10-29;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=embryonic cell,stem cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 2) TF ChIP-seq CHD2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EBT] [Life stage: Embryonic] [TF ChIP-seq peaks]
CHD2 • GM12878 NGENCGPHGTX2AG • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENCGPHGTX2AG data_source ENCODE Download track Download number_of_intervals 18,859 bp_covered 6,821,688 output_type IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DZR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHD2 assay TF ChIP-seq file_format bed narrowPeak file_size 365,108 downloaded_date 06/12/2022 release_date 01/08/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF697XCL.bed.gz processed_file_md5 4cbfca0b114fffd19199ec432d218421 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF697XCL.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF697XCL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF697XCL/@@download/ENCFF697XCL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF697XCL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 567bdf3c06045263b34320feab7650e4 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM935378,UCSC-ENCODE-hg19:wgEncodeEH001831;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,B cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 1, 2) TF ChIP-seq CHD2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DZR] [Life stage: Adult] [TF ChIP-seq peaks]