H3K4me1 • Lower motor neurons NGENC6VUOPIVHP • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Lower motor neurons Histone Show metadata Download track Track metadata identifier NGENC6VUOPIVHP data_source ENCODE Download track Download number_of_intervals 140,415 bp_covered 133,328,219 output_type pseudoreplicated peaks genome_build hg38 cell_type Lower motor neurons biosample_type In vitro differentiated cells biosample_term_id CL:0000100 tissue_category Brain encode_experiment_id ENCSR564EFE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,833,328 downloaded_date 06/12/2022 release_date 02/09/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF090WIB.bed.gz processed_file_md5 235d7d8b6322519e3e6f65efc20543ab wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF090WIB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF090WIB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF090WIB/@@download/ENCFF090WIB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF090WIB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d9ae5f6b682694f0ff238326109c0ce4 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens from a donor with amyotrophic lateral sclerosis| motor neuron;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 47 years;Reference=PMID:35045337;External_resources=GEO:GSE187713;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-08-24,2021-12-15;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=motor neuron;ENCODE_cell_slims=neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=motoneuron;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000100;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Lower motor neurons (repl. 1, 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR564EFE] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Right ventricle NGENC6W6IBLCIE • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Right ventricle Histone Show metadata Download track Track metadata identifier NGENC6W6IBLCIE data_source ENCODE Download track Download number_of_intervals 24,041 bp_covered 23,139,634 output_type pseudoreplicated peaks genome_build hg38 cell_type Right ventricle biosample_type Tissue biosample_term_id UBERON:0002080 tissue_category Heart encode_experiment_id ENCSR350GZX biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 579,463 downloaded_date 06/12/2022 release_date 07/23/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF287WFO.bed.gz processed_file_md5 c47155b6b103fc59ab82f8978d1e2d15 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF287WFO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF287WFO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF287WFO/@@download/ENCFF287WFO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF287WFO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a7df0b084caa66e5f46e7eeadda7f23e data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens heart right ventricle tissue male adult (40 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 40 years;Reference=NR;External_resources=GEO:GSE167664;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-09-15,2020-07-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=heart right ventricle;ENCODE_cell_slims=NR;ENCODE_system_slims=circulatory system;ENCODE_biosample_term_synonyms=right ventricle,cardiac right ventricle,right ventricle of heart;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002080;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Right ventricle (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR350GZX] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • A549 NGENC6W7ALS32M • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq A549 Histone Show metadata Download track Track metadata identifier NGENC6W7ALS32M data_source ENCODE Download track Download number_of_intervals 91,756 bp_covered 89,310,348 output_type pseudoreplicated peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR225AOO biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,450,921 downloaded_date 07/10/2025 release_date 11/13/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF666NMU.bed.gz processed_file_md5 8d5c61734ee52d736cbee6fadc53ec4a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF666NMU.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF666NMU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF666NMU/@@download/ENCFF666NMU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF666NMU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5dcab6104a2c53c44e4374d4709c5b1b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 5 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91223;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1, 2, 3) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR225AOO] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • A549 NGENC6WIGEXPII • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq A549 Histone Show metadata Download track Track metadata identifier NGENC6WIGEXPII data_source ENCODE Download track Download number_of_intervals 69,980 bp_covered 67,019,019 output_type replicated peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR868MLT biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,803,570 downloaded_date 07/10/2025 release_date 11/13/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF693YMO.bed.gz processed_file_md5 43329389484925efdb62c52d6347761f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF693YMO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF693YMO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF693YMO/@@download/ENCFF693YMO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF693YMO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 dfc3eadacb1df9918d58f1231a7fcf06 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 6 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91346;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;Bio_rep=1, 2, 3;Tech_rep=1_1, 2_1, 3_1;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1, 2) Histone ChIP-seq H3K4me1 replicated peaks (narrowPeak) [Experiment: ENCSR868MLT] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • H9 NGENC6X457NCLD • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq H9 Histone Show metadata Download track Track metadata identifier NGENC6X457NCLD data_source ENCODE Download track Download number_of_intervals 251,457 bp_covered 177,439,790 output_type replicated peaks genome_build hg38 cell_type H9 biosample_type Stem cell biosample_term_id EFO:0003045 tissue_category Embryo encode_experiment_id ENCSR419UJI biological_replicate 2, 3 technical_replicate 2_1, 3_1 antibody H3K4me1 assay Mint-ChIP-seq file_format bed narrowPeak file_size 7,471,938 downloaded_date 06/12/2022 release_date 05/12/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF780HAV.bed.gz processed_file_md5 e02f956d712c54e1a2f15e36d9f81c8c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF780HAV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF780HAV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF780HAV/@@download/ENCFF780HAV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF780HAV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 952348943a6432902275beaabc6e7dba data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE177193;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-24,2020-09-08;Submitted_track_name=rep2_vs_rep3.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H9;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;Bio_rep=1, 2, 3;Tech_rep=1_1, 1_2, 2_1, 2_2, 3_1, 3_2;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003045;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H9 (repl. 2, 3) Mint-ChIP-seq H3K4me1-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR419UJI] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me1 • T-helper 1 cell NGENC6XSEMU6DT • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq T-helper 1 cell Histone Show metadata Download track Track metadata identifier NGENC6XSEMU6DT data_source ENCODE Download track Download number_of_intervals 274,328 bp_covered 136,806,426 output_type pseudoreplicated peaks genome_build hg38 cell_type T-helper 1 cell biosample_type Primary cell biosample_term_id CL:0000545 tissue_category Immune encode_experiment_id ENCSR975JXS biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K4me1 assay Mint-ChIP-seq file_format bed narrowPeak file_size 7,298,134 downloaded_date 06/12/2022 release_date 06/18/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF964KPX.bed.gz processed_file_md5 d23624bbd2ae85dfeaa3998182887098 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF964KPX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF964KPX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF964KPX/@@download/ENCFF964KPX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF964KPX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 76a0aa266e0ff8fbf3931c004898b5c9 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens T-helper 1 cell male adult (35 years) treated with 1 _g/mL Interleukin-4 antibody for 36 hours, 30 ng/mL Interleukin-12 subunit alpha for 36 hours, 30 ng/mL Interleukin-12 subunit beta for 36 hours;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 35 years;Reference=NR;External_resources=GEO:GSE187901;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-06-24;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=T-helper 1 cell;ENCODE_cell_slims=T cell,leukocyte,CD4+ T cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=T helper cells type 1,Th1 T cell,Th1 T-cell,helper T cell type 1,Th1 CD4+ T cell,Th1 T lymphocyte,T(H)-1 cell,Th1 T-lymphocyte,Th1 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000545;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE T-helper 1 cell (repl. 1) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR975JXS] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Common myeloid progenitor cell NGENC6XWRT5FNG • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Common myeloid progenitor cell Histone Show metadata Download track Track metadata identifier NGENC6XWRT5FNG data_source ENCODE Download track Download number_of_intervals 122,648 bp_covered 156,288,189 output_type pseudoreplicated peaks genome_build hg38 cell_type Common myeloid progenitor cell biosample_type Primary cell biosample_term_id NCIT:C12552 tissue_category Blood encode_experiment_id ENCSR340SGE biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,178,832 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF203TUU.bed.gz processed_file_md5 0831233b63a4e77a52e833c63c2019fc wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF203TUU.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF203TUU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF203TUU/@@download/ENCFF203TUU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF203TUU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 66bff6c2cab110296a7a063a41a113da data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens common myeloid progenitor, CD34-positive female adult (27 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 27 years;Reference=PMID:32728046;External_resources=GEO:GSM706845,GEO:GSM772734;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=false;ENCODE_biosample_term_name=common myeloid progenitor, CD34-positive;ENCODE_cell_slims=myeloid cell,hematopoietic cell,progenitor cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=common myeloid precursor, CD34-positive;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0001059;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Common myeloid progenitor cell (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR340SGE] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Neuronal stem cell NGENC6YP6EIJVI • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Neuronal stem cell Histone Show metadata Download track Track metadata identifier NGENC6YP6EIJVI data_source ENCODE Download track Download number_of_intervals 197,856 bp_covered 63,755,471 output_type pseudoreplicated peaks genome_build hg38 cell_type Neuronal stem cell biosample_type In vitro differentiated cells biosample_term_id CL:0000047 tissue_category Embryo encode_experiment_id ENCSR254NLC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 4,632,949 downloaded_date 06/12/2022 release_date 11/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF103SSO.bed.gz processed_file_md5 23daf0d5b9e1c3b63106b38776f6474e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF103SSO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF103SSO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF103SSO/@@download/ENCFF103SSO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF103SSO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 50714da1f43f2a3be59a07d28a72a0e7 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens neuronal stem cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM818039,GEO:GSM818040;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=neuronal stem cell;ENCODE_cell_slims=stem cell,neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NSC,neuronal stem cell,neural stem cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000047;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Neuronal stem cell (repl. 1, 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR254NLC] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me1 • A549 NGENC6ZDPYZYZA • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq A549 Histone Show metadata Download track Track metadata identifier NGENC6ZDPYZYZA data_source ENCODE Download track Download number_of_intervals 106,814 bp_covered 112,393,916 output_type replicated peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR404OLV biological_replicate 1, 3 technical_replicate 1_1, 3_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,812,494 downloaded_date 07/10/2025 release_date 11/13/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF893WFR.bed.gz processed_file_md5 74cebec6d4e0dd4d1f47ab462253e587 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF893WFR.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF893WFR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF893WFR/@@download/ENCFF893WFR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF893WFR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2ce8d7c023e570705b7dd26530cc8792 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 8 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91256;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=rep1_vs_rep3.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;Bio_rep=1, 2, 3;Tech_rep=1_1, 2_1, 3_1;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1, 3) Histone ChIP-seq H3K4me1 replicated peaks (narrowPeak) [Experiment: ENCSR404OLV] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Endodermal cell NGENC6ZHKGSGUV • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Endodermal cell Histone Show metadata Download track Track metadata identifier NGENC6ZHKGSGUV data_source ENCODE Download track Download number_of_intervals 336,442 bp_covered 208,480,153 output_type pseudoreplicated peaks genome_build hg38 cell_type Endodermal cell biosample_type In vitro differentiated cells biosample_term_id CL:0000223 tissue_category Embryo encode_experiment_id ENCSR531CWB biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1, 2_2 antibody H3K4me1 assay Mint-ChIP-seq file_format bed narrowPeak file_size 9,617,104 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF133NGI.bed.gz processed_file_md5 435c1582136c75ae7c9cbf5591e2cfea wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF133NGI.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF133NGI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF133NGI/@@download/ENCFF133NGI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF133NGI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b21a7644c7aace6c8e1439bf90b22a61 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens endodermal cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE177215;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-09-06,2020-08-04;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=endodermal cell;ENCODE_cell_slims=embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=endoderm cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000223;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Endodermal cell (repl. 1, 2) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR531CWB] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me1 • T-helper 17 cell NGENC6ZZISK72M • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq T-helper 17 cell Histone Show metadata Download track Track metadata identifier NGENC6ZZISK72M data_source ENCODE Download track Download number_of_intervals 91,970 bp_covered 120,124,523 output_type replicated peaks genome_build hg38 cell_type T-helper 17 cell biosample_type Primary cell biosample_term_id CL:0000899 tissue_category Immune encode_experiment_id ENCSR091TTT biological_replicate 1, 2 technical_replicate 1_4, 2_2 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,519,450 downloaded_date 07/10/2025 release_date 01/30/2021 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF699ONJ.bed.gz processed_file_md5 20debce9c23e05d56c9e6919b7d51b2b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF699ONJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF699ONJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF699ONJ/@@download/ENCFF699ONJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF699ONJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b08e4c1e960b8aa564b393fd957a3836 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens T-helper 17 cell treated with phorbol 13-acetate 12-myristate, ionomycin;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM772985,GEO:GSM997224;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=false;ENCODE_biosample_term_name=T-helper 17 cell;ENCODE_cell_slims=T cell,leukocyte,CD4+ T cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=Th17 T-lymphocyte,T helper cells type 17,Th17 cell,helper T cell type 17,Th17 CD4+ T cell,Th17 T lymphocyte,Th17 T-cell,Th17 T cell,T(H)-17 cell,IL-17-producing CD4+ T helper;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000899;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Unknown track_name ENCODE T-helper 17 cell (repl. 1, 2) Histone ChIP-seq H3K4me1 replicated peaks (narrowPeak) [Experiment: ENCSR091TTT] [Histone ChIP-seq peaks]
H3K4me1 • Esophagus NGENC72BAXYAK6 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Esophagus Histone Show metadata Download track Track metadata identifier NGENC72BAXYAK6 data_source ENCODE Download track Download number_of_intervals 83,978 bp_covered 34,369,007 output_type pseudoreplicated peaks genome_build hg38 cell_type Esophagus biosample_type Tissue biosample_term_id NCIT:C12389 tissue_category Digestive encode_experiment_id ENCSR306ZBD biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,897,467 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF681RQR.bed.gz processed_file_md5 48bde423d9132de4d9cf3ea97ad972ef wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF681RQR.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF681RQR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF681RQR/@@download/ENCFF681RQR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF681RQR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9f8aef7267caf5dfab7bb038a59af3f8 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens esophagus tissue male adult (34 years);Lab=Bing Ren, UCSD;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 34 years;Reference=PMID:32728046;External_resources=GEO:GSM910573;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=esophagus;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=oesophagus,gullet;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001043;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE Esophagus (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR306ZBD] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • DOHH2 NGENC73IDTC7SH • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq DOHH2 Histone Show metadata Download track Track metadata identifier NGENC73IDTC7SH data_source ENCODE Download track Download number_of_intervals 110,123 bp_covered 144,656,757 output_type pseudoreplicated peaks genome_build hg38 cell_type DOHH2 biosample_type Cell line biosample_term_id EFO:0002167 tissue_category Blood encode_experiment_id ENCSR460SEN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,093,330 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF291VCR.bed.gz processed_file_md5 7f2e88998e86b8ed1596e41e91d80c1b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF291VCR.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF291VCR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF291VCR/@@download/ENCFF291VCR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF291VCR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0be32817d7d7cf71102e612549f806ea data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens DOHH2;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 60 years;Reference=PMID:32728046;External_resources=GEO:GSE86711;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=DOHH2;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002167;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE DOHH2 (repl. 1, 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR460SEN] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Psoas muscle NGENC74A73R2BR • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Psoas muscle Histone Show metadata Download track Track metadata identifier NGENC74A73R2BR data_source ENCODE Download track Download number_of_intervals 82,201 bp_covered 31,565,014 output_type pseudoreplicated peaks genome_build hg38 cell_type Psoas muscle biosample_type Tissue biosample_term_id UBERON:0008450 tissue_category Skeletal Muscle encode_experiment_id ENCSR410UUH biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,837,477 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF160CWH.bed.gz processed_file_md5 4e115f55dd88ca7bfd393f25d9474581 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF160CWH.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF160CWH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF160CWH/@@download/ENCFF160CWH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF160CWH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 96c96ced28453fcf1881e1a6aa469852 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens psoas muscle tissue male adult (34 years);Lab=Bing Ren, UCSD;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 34 years;Reference=PMID:32728046;External_resources=GEO:GSM956021;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=psoas muscle;ENCODE_cell_slims=NR;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=psoas;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0008450;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Muscular life_stage Adult track_name ENCODE Psoas muscle (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR410UUH] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • HEK293 NGENC75CTBYCPL • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq HEK293 Histone Show metadata Download track Track metadata identifier NGENC75CTBYCPL data_source ENCODE Download track Download number_of_intervals 47,656 bp_covered 23,808,135 output_type pseudoreplicated peaks genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR000FCG biological_replicate 2 technical_replicate 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,013,672 downloaded_date 06/12/2022 release_date 10/29/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF260GDT.bed.gz processed_file_md5 e40975059260157fc74f7c00a19178ed wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF260GDT.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF260GDT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF260GDT/@@download/ENCFF260GDT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF260GDT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6b2cdd389d9a1c1bb1a812d4a0c87001 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:22951069;External_resources=GEO:GSE174861;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2014-07-07,2011-10-29;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HEK293;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=human embryonic kidney cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Renal life_stage Embryonic track_name ENCODE HEK293 (repl. 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000FCG] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me1 • Keratinocyte NGENC75OUTYRXX • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Keratinocyte Histone Show metadata Download track Track metadata identifier NGENC75OUTYRXX data_source ENCODE Download track Download number_of_intervals 87,124 bp_covered 65,745,490 output_type pseudoreplicated peaks genome_build hg38 cell_type Keratinocyte biosample_type Primary cell biosample_term_id CL:0000312 tissue_category Skin encode_experiment_id ENCSR487KVV biological_replicate 2 technical_replicate 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,370,454 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF867LFA.bed.gz processed_file_md5 769682340bcd94d6761a42303eb35e92 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF867LFA.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF867LFA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF867LFA/@@download/ENCFF867LFA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF867LFA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a4948f99112937f9f8215e50b0134c18 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens foreskin keratinocyte male newborn (2-4 days);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=newborn 2-4 days;Reference=NR;External_resources=GEO:GSE175294;Project=GGR;Award=U01HG007919;Experiment_date_released=2017-10-10;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=foreskin keratinocyte;ENCODE_cell_slims=keratinocyte,epithelial cell;ENCODE_system_slims=reproductive system,integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:1001606;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Newborn track_name ENCODE Keratinocyte (repl. 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR487KVV] [Life stage: Newborn] [Histone ChIP-seq peaks]
H3K4me1 • Fibroblast NGENC77D3JA2XD • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Fibroblast Histone Show metadata Download track Track metadata identifier NGENC77D3JA2XD data_source ENCODE Download track Download number_of_intervals 236,081 bp_covered 220,958,560 output_type pseudoreplicated peaks genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id ENCSR346DNL biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 5,640,340 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF102NAT.bed.gz processed_file_md5 0f88d9351027e6aa1575fc3c3265cb47 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF102NAT.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF102NAT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF102NAT/@@download/ENCFF102NAT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF102NAT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e1302b2f0cc8431922fdf4deb3919364 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens foreskin fibroblast male newborn;Lab=Joseph Costello, UCSF;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM817234;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=foreskin fibroblast;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=reproductive system,integumental system;ENCODE_biosample_term_synonyms=BJ fibroblast;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:1001608;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Newborn track_name ENCODE Fibroblast (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR346DNL] [Life stage: Newborn] [Histone ChIP-seq peaks]
H3K4me1 • Spleen NGENC7AJFJRXEX • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Spleen Histone Show metadata Download track Track metadata identifier NGENC7AJFJRXEX data_source ENCODE Download track Download number_of_intervals 63,012 bp_covered 48,455,603 output_type pseudoreplicated peaks genome_build hg38 cell_type Spleen biosample_type Tissue biosample_term_id UBERON:0002106 tissue_category Immune Organ encode_experiment_id ENCSR922KKS biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,307,626 downloaded_date 06/12/2022 release_date 07/23/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF751ICU.bed.gz processed_file_md5 5e732d0902ef1ae084e3dbc1c4b38a7a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF751ICU.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF751ICU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF751ICU/@@download/ENCFF751ICU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF751ICU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 dc99d3e52b196c465b467887f463d010 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens spleen tissue female adult (59 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 59 years;Reference=NR;External_resources=GEO:GSE167790;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-09-10,2020-09-03;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=spleen;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system,immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002106;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE Spleen (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR922KKS] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Thymus NGENC7FJTSESFY • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Thymus Histone Show metadata Download track Track metadata identifier NGENC7FJTSESFY data_source ENCODE Download track Download number_of_intervals 68,294 bp_covered 39,116,789 output_type pseudoreplicated peaks genome_build hg38 cell_type Thymus biosample_type Tissue biosample_term_id UBERON:0002370 tissue_category Immune Organ encode_experiment_id ENCSR762ZLM biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,421,457 downloaded_date 06/12/2022 release_date 08/14/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF662NCM.bed.gz processed_file_md5 04de7acf0a1618981ee10308a2821ae1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF662NCM.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF662NCM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF662NCM/@@download/ENCFF662NCM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF662NCM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2c3104c654270341e26ffd66b4d31e11 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens thymus tissue male child (3 years);Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=child 3 years;Reference=PMID:32728046;External_resources=GEO:GSM1059446;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=thymus;ENCODE_cell_slims=NR;ENCODE_system_slims=endocrine system,immune system;ENCODE_biosample_term_synonyms=thymus gland,thymus organ;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002370;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Child track_name ENCODE Thymus (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR762ZLM] [Life stage: Child] [Histone ChIP-seq peaks]
H3K4me1 • Brain NGENC7FSHMTCPG • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Brain Histone Show metadata Download track Track metadata identifier NGENC7FSHMTCPG data_source ENCODE Download track Download number_of_intervals 194,887 bp_covered 191,118,605 output_type pseudoreplicated peaks genome_build hg38 cell_type Brain biosample_type Organoid biosample_term_id UBERON:0000955 tissue_category Brain encode_experiment_id ENCSR000FYV biological_replicate 1, 2, 3 technical_replicate 1_1, 1_2, 2_1, 2_2, 3_1, 3_2 antibody H3K4me1 assay Mint-ChIP-seq file_format bed narrowPeak file_size 5,690,270 downloaded_date 06/12/2022 release_date 05/11/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF382NPO.bed.gz processed_file_md5 20f3b46fbbe9ddc91826a06842dc9f6e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF382NPO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF382NPO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF382NPO/@@download/ENCFF382NPO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF382NPO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3c9a4f1ccf0995f168b8de44a86ea803 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens brain organoid, 30 days post differentiation;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE208450;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-11-18,2020-07-06;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=brain;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000955;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Embryonic track_name ENCODE Brain (repl. 1, 2, 3) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000FYV] [Life stage: Embryonic] [Histone ChIP-seq peaks]