CHD4 • A549 NGFTBET73RPXHC • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBET73RPXHC data_source Factorbook Download track Download number_of_intervals 2,192 bp_covered 46,032 output_type transcription factor binding sites significant genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR550SCU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHD4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 27,924 downloaded_date 07/10/2024 release_date 11/23/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF669UYG_TCCCAAAGTGCTGGGATTACA_filtered.bed.gz processed_file_md5 20791c1f81a4f523eaad5464853601de wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF669UYG_TCCCAAAGTGCTGGGATTACA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF669UYG_TCCCAAAGTGCTGGGATTACA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF669UYG_TCCCAAAGTGCTGGGATTACA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF669UYG_TCCCAAAGTGCTGGGATTACA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 19f06cefad79494feb1d8e21e5ccc737 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549;Original_cell_type=A549;Lab=Bradley Bernstein, Broad;System=respiratory system;ENCODE_BED_id=ENCFF669UYG;ENCODE_bigBed_id=ENCFF005TEA;PMID=34755879;Motif_sequence=TCCCAAAGTGCTGGGATTACA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding CHD4 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR550SCU] [Life stage: Adult] [TFBS]
CHD4 • K562 NGFTBFPTY4QCAC • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBFPTY4QCAC data_source Factorbook Download track Download number_of_intervals 2,911 bp_covered 84,419 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000ATL biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CHD4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 63,122 downloaded_date 07/10/2024 release_date 08/06/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF985QBS_TAARYRGCAGAGCYRGGATTYRAACCCAG_sorted.bed.gz processed_file_md5 36fd30ef41c5663923969d85b31914a6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF985QBS_TAARYRGCAGAGCYRGGATTYRAACCCAG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF985QBS_TAARYRGCAGAGCYRGGATTYRAACCCAG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF985QBS_TAARYRGCAGAGCYRGGATTYRAACCCAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF985QBS_TAARYRGCAGAGCYRGGATTYRAACCCAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b83849ebe02297d2a9ccddbf01be11fe data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF985QBS;ENCODE_bigBed_id=ENCFF933NKI;PMID=34755879;Motif_sequence=TAARYRGCAGAGCYRGGATTYRAACCCAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2, 3) Motif finding CHD4 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000ATL] [Life stage: Adult] [TFBS]
CHD4 • GM12878 NGFTBIKTZD7OCD • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBIKTZD7OCD data_source Factorbook Download track Download number_of_intervals 389 bp_covered 10,114 output_type transcription factor binding sites significant genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR751CJG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHD4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 6,708 downloaded_date 07/10/2024 release_date 11/23/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF403JIP_WSGGCTCACTGCAACCTCYGCCTCCY_filtered.bed.gz processed_file_md5 4f2991f3ec440cf339120634b66f3969 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF403JIP_WSGGCTCACTGCAACCTCYGCCTCCY_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF403JIP_WSGGCTCACTGCAACCTCYGCCTCCY_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF403JIP_WSGGCTCACTGCAACCTCYGCCTCCY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF403JIP_WSGGCTCACTGCAACCTCYGCCTCCY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 82ed265fc81fea0f9410a72679c3fd12 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF403JIP;ENCODE_bigBed_id=ENCFF962GSN;PMID=34755879;Motif_sequence=WSGGCTCACTGCAACCTCYGCCTCCY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding CHD4 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR751CJG] [TFBS]
CHD4 • HepG2 NGFTBIO4XDJJWT • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBIO4XDJJWT data_source Factorbook Download track Download number_of_intervals 2,016 bp_covered 42,336 output_type transcription factor binding sites significant genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR431FOF biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHD4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 25,533 downloaded_date 07/10/2024 release_date 08/12/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF691DTG_CCCATTTTACAGATGRGRAAA_filtered.bed.gz processed_file_md5 221348dc380400f2a35452ec278a4135 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF691DTG_CCCATTTTACAGATGRGRAAA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF691DTG_CCCATTTTACAGATGRGRAAA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF691DTG_CCCATTTTACAGATGRGRAAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF691DTG_CCCATTTTACAGATGRGRAAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 999d7efd7b4d43311a0456e740cd3633 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Bradley Bernstein, Broad;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF691DTG;ENCODE_bigBed_id=ENCFF615GUT;PMID=34755879;Motif_sequence=CCCATTTTACAGATGRGRAAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding CHD4 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR431FOF] [Life stage: Child] [TFBS]
CHD4 • HepG2 NGFTBIPEYS6RPG • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBIPEYS6RPG data_source Factorbook Download track Download number_of_intervals 7,090 bp_covered 148,890 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR431FOF biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHD4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 112,269 downloaded_date 07/10/2024 release_date 08/12/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF691DTG_CCCATTTTACAGATGRGRAAA_sorted.bed.gz processed_file_md5 8b10708aeb8747f82f9ba71dc92bbcdf wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF691DTG_CCCATTTTACAGATGRGRAAA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF691DTG_CCCATTTTACAGATGRGRAAA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF691DTG_CCCATTTTACAGATGRGRAAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF691DTG_CCCATTTTACAGATGRGRAAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 999d7efd7b4d43311a0456e740cd3633 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Bradley Bernstein, Broad;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF691DTG;ENCODE_bigBed_id=ENCFF615GUT;PMID=34755879;Motif_sequence=CCCATTTTACAGATGRGRAAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding CHD4 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR431FOF] [Life stage: Child] [TFBS]
CHD4 • K562 NGFTBP2JZXMFL6 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBP2JZXMFL6 data_source Factorbook Download track Download number_of_intervals 159 bp_covered 2,385 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000ATL biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CHD4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,723 downloaded_date 07/10/2024 release_date 08/06/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF985QBS_CCAAGGTCACACAGC_filtered.bed.gz processed_file_md5 64c60534124693cef83b1b8ffe35df5d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF985QBS_CCAAGGTCACACAGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF985QBS_CCAAGGTCACACAGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF985QBS_CCAAGGTCACACAGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF985QBS_CCAAGGTCACACAGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 e0e0929c22d08fd323dd224a71e4dd77 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF985QBS;ENCODE_bigBed_id=ENCFF933NKI;PMID=34755879;Motif_sequence=CCAAGGTCACACAGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2, 3) Motif finding CHD4 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000ATL] [Life stage: Adult] [TFBS]
CHD4 • A549 NGFTBPIJ5RIQG3 • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBPIJ5RIQG3 data_source Factorbook Download track Download number_of_intervals 769 bp_covered 18,456 output_type transcription factor binding sites significant genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR550SCU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHD4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 13,468 downloaded_date 07/10/2024 release_date 11/23/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF669UYG_TTTTACAGATGRGRAAACTGAGGC_filtered.bed.gz processed_file_md5 8e592a94b3a35734d61675748dcdd752 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF669UYG_TTTTACAGATGRGRAAACTGAGGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF669UYG_TTTTACAGATGRGRAAACTGAGGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF669UYG_TTTTACAGATGRGRAAACTGAGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF669UYG_TTTTACAGATGRGRAAACTGAGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4097608a772d7adcf94ec1de2273f69e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549;Original_cell_type=A549;Lab=Bradley Bernstein, Broad;System=respiratory system;ENCODE_BED_id=ENCFF669UYG;ENCODE_bigBed_id=ENCFF005TEA;PMID=34755879;Motif_sequence=TTTTACAGATGRGRAAACTGAGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding CHD4 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR550SCU] [Life stage: Adult] [TFBS]
CHD4 • A549 NGFTBPMXAYQSQK • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBPMXAYQSQK data_source Factorbook Download track Download number_of_intervals 1,653 bp_covered 39,672 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR550SCU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHD4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 32,623 downloaded_date 07/10/2024 release_date 11/23/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF669UYG_TTTTACAGATGRGRAAACTGAGGC_sorted.bed.gz processed_file_md5 fe48017a396570429541af479b1dd6f2 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF669UYG_TTTTACAGATGRGRAAACTGAGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF669UYG_TTTTACAGATGRGRAAACTGAGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF669UYG_TTTTACAGATGRGRAAACTGAGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF669UYG_TTTTACAGATGRGRAAACTGAGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4097608a772d7adcf94ec1de2273f69e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549;Original_cell_type=A549;Lab=Bradley Bernstein, Broad;System=respiratory system;ENCODE_BED_id=ENCFF669UYG;ENCODE_bigBed_id=ENCFF005TEA;PMID=34755879;Motif_sequence=TTTTACAGATGRGRAAACTGAGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding CHD4 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR550SCU] [Life stage: Adult] [TFBS]
CHD4 • K562 NGFTBRPOKJUPYB • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBRPOKJUPYB data_source Factorbook Download track Download number_of_intervals 152 bp_covered 2,280 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000ATL biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CHD4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,725 downloaded_date 07/10/2024 release_date 08/06/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF985QBS_TGAGGCHCAGAGARG_filtered.bed.gz processed_file_md5 598b14ec05a2f1d36f022d0c81d32f46 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF985QBS_TGAGGCHCAGAGARG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF985QBS_TGAGGCHCAGAGARG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF985QBS_TGAGGCHCAGAGARG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF985QBS_TGAGGCHCAGAGARG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ef1757e4cc8ba4d636ed8fe192b7acbc data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF985QBS;ENCODE_bigBed_id=ENCFF933NKI;PMID=34755879;Motif_sequence=TGAGGCHCAGAGARG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2, 3) Motif finding CHD4 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000ATL] [Life stage: Adult] [TFBS]
CHD4 • GM12878 NGFTBT6YS4FNNB • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBT6YS4FNNB data_source Factorbook Download track Download number_of_intervals 1,627 bp_covered 42,302 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR751CJG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CHD4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 30,591 downloaded_date 07/10/2024 release_date 11/23/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF403JIP_WSGGCTCACTGCAACCTCYGCCTCCY_sorted.bed.gz processed_file_md5 f7b0ffaff6b0e2c968db1d272b0d75ef wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF403JIP_WSGGCTCACTGCAACCTCYGCCTCCY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF403JIP_WSGGCTCACTGCAACCTCYGCCTCCY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF403JIP_WSGGCTCACTGCAACCTCYGCCTCCY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF403JIP_WSGGCTCACTGCAACCTCYGCCTCCY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 82ed265fc81fea0f9410a72679c3fd12 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF403JIP;ENCODE_bigBed_id=ENCFF962GSN;PMID=34755879;Motif_sequence=WSGGCTCACTGCAACCTCYGCCTCCY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding CHD4 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR751CJG] [TFBS]
CHD4 • K562 NGFTBTHOI6RJGI • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBTHOI6RJGI data_source Factorbook Download track Download number_of_intervals 227 bp_covered 6,583 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000ATL biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CHD4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 4,824 downloaded_date 07/10/2024 release_date 08/06/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF985QBS_TAARYRGCAGAGCYRGGATTYRAACCCAG_filtered.bed.gz processed_file_md5 f51d0ee80a95d7da4f119508471e5bb6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF985QBS_TAARYRGCAGAGCYRGGATTYRAACCCAG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF985QBS_TAARYRGCAGAGCYRGGATTYRAACCCAG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF985QBS_TAARYRGCAGAGCYRGGATTYRAACCCAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF985QBS_TAARYRGCAGAGCYRGGATTYRAACCCAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b83849ebe02297d2a9ccddbf01be11fe data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF985QBS;ENCODE_bigBed_id=ENCFF933NKI;PMID=34755879;Motif_sequence=TAARYRGCAGAGCYRGGATTYRAACCCAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2, 3) Motif finding CHD4 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000ATL] [Life stage: Adult] [TFBS]
CHD4 • K562 NGFTBWPJRJKWOQ • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBWPJRJKWOQ data_source Factorbook Download track Download number_of_intervals 1,871 bp_covered 39,291 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000ATL biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CHD4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 27,029 downloaded_date 07/10/2024 release_date 08/06/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF985QBS_CCCATTTTACAGATGRGRAAA_filtered.bed.gz processed_file_md5 ec178e7a2670ce5ac5a7182e4047f7e1 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF985QBS_CCCATTTTACAGATGRGRAAA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF985QBS_CCCATTTTACAGATGRGRAAA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF985QBS_CCCATTTTACAGATGRGRAAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF985QBS_CCCATTTTACAGATGRGRAAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 940cf2954a8709d0010b45bd58db5b8b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF985QBS;ENCODE_bigBed_id=ENCFF933NKI;PMID=34755879;Motif_sequence=CCCATTTTACAGATGRGRAAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2, 3) Motif finding CHD4 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000ATL] [Life stage: Adult] [TFBS]
CHD7 • H1-hESC NGENC3CLHOA3VA • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq H1-hESC TF Show metadata Download track Track metadata identifier NGENC3CLHOA3VA data_source ENCODE Download track Download number_of_intervals 1,397 bp_covered 314,659 output_type IDR thresholded peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000AVA biological_replicate 1 technical_replicate 1_1 antibody CHD7 assay TF ChIP-seq file_format bed narrowPeak file_size 24,149 downloaded_date 06/12/2022 release_date 03/20/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF083XBW.bed.gz processed_file_md5 df86c49b5518f7c2c79344e202fc90d4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF083XBW.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF083XBW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF083XBW/@@download/ENCFF083XBW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF083XBW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b11d8b556db363e884db33738b9c8575 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32737473;External_resources=GEO:GSM1003473,UCSC-ENCODE-hg19:wgEncodeEH003136,FactorBook:ENCSR000AVA;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-08-06,2011-02-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=embryonic cell,stem cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.7.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1) TF ChIP-seq CHD7 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000AVA] [Life stage: Embryonic] [TF ChIP-seq peaks]
CHD7 • H1-hESC NGENC6MI5556QD • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq H1-hESC TF Show metadata Download track Track metadata identifier NGENC6MI5556QD data_source ENCODE Download track Download number_of_intervals 6,244 bp_covered 3,346,941 output_type IDR thresholded peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000AVA biological_replicate 2 technical_replicate 2_1, 2_2 antibody CHD7 assay TF ChIP-seq file_format bed narrowPeak file_size 113,460 downloaded_date 06/12/2022 release_date 03/20/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF543VOM.bed.gz processed_file_md5 3aee6878f3843706cea214a2629852a9 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF543VOM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF543VOM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF543VOM/@@download/ENCFF543VOM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF543VOM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ca043f0acf5fa03c904a1f0d217ad602 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32737473;External_resources=GEO:GSM1003473,UCSC-ENCODE-hg19:wgEncodeEH003136,FactorBook:ENCSR000AVA;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-08-06,2011-02-10;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=embryonic cell,stem cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.7.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 2) TF ChIP-seq CHD7 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000AVA] [Life stage: Embryonic] [TF ChIP-seq peaks]
CHD7 • K562 NGENCDHRIEKBKO • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCDHRIEKBKO data_source ENCODE Download track Download number_of_intervals 1,177 bp_covered 298,978 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000AVD biological_replicate 1 technical_replicate 1_1 antibody CHD7 assay TF ChIP-seq file_format bed narrowPeak file_size 20,968 downloaded_date 06/12/2022 release_date 01/18/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF692YQA.bed.gz processed_file_md5 097c4f4d1505dd516b3e472e6a44e8ad wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF692YQA.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF692YQA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF692YQA/@@download/ENCFF692YQA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF692YQA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8baf46104b912b7825694b2115acddbd data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH003139,FactorBook:ENCSR000AVD,GEO:GSM1003478;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-08-06,2011-02-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq CHD7 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000AVD] [Life stage: Adult] [TF ChIP-seq peaks]
CHD7 • H1-hESC NGENCFDDSAKTXW • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq H1-hESC TF Show metadata Download track Track metadata identifier NGENCFDDSAKTXW data_source ENCODE Download track Download number_of_intervals 3,540 bp_covered 1,836,572 output_type conservative IDR thresholded peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000AVA biological_replicate 1, 2 technical_replicate 1_1, 2_1, 2_2 antibody CHD7 assay TF ChIP-seq file_format bed narrowPeak file_size 65,629 downloaded_date 06/12/2022 release_date 03/20/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF586SXF.bed.gz processed_file_md5 873f69c1d6af1c90d977de564c4c961d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF586SXF.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF586SXF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF586SXF/@@download/ENCFF586SXF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF586SXF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d14e3c5ccb40100a884471f204904a27 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32737473;External_resources=GEO:GSM1003473,UCSC-ENCODE-hg19:wgEncodeEH003136,FactorBook:ENCSR000AVA;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-08-06,2011-02-10;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=embryonic cell,stem cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.7.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1, 2) TF ChIP-seq CHD7 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000AVA] [Life stage: Embryonic] [TF ChIP-seq peaks]
CHD7 • H1-hESC NGENCTG5JZDABS • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq H1-hESC TF Show metadata Download track Track metadata identifier NGENCTG5JZDABS data_source ENCODE Download track Download number_of_intervals 7,148 bp_covered 3,915,941 output_type IDR thresholded peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000AVA biological_replicate 1, 2 technical_replicate 1_1, 2_1, 2_2 antibody CHD7 assay TF ChIP-seq file_format bed narrowPeak file_size 129,040 downloaded_date 06/12/2022 release_date 03/20/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF126NLU.bed.gz processed_file_md5 77c1f4075bfe8083fcbbe8a42c2cfe29 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF126NLU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF126NLU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF126NLU/@@download/ENCFF126NLU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF126NLU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 23f89abec3a74ffbff0b84343267786f data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32737473;External_resources=GEO:GSM1003473,UCSC-ENCODE-hg19:wgEncodeEH003136,FactorBook:ENCSR000AVA;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-08-06,2011-02-10;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=embryonic cell,stem cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.7.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1, 2) TF ChIP-seq CHD7 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000AVA] [Life stage: Embryonic] [TF ChIP-seq peaks]
CHD7 • H1-hESC NGFTB4A7UZ72LQ • Factorbook34755879 Motif finding H1-hESC TFBS Show metadata Download track Track metadata identifier NGFTB4A7UZ72LQ data_source Factorbook Download track Download number_of_intervals 1,373 bp_covered 41,190 output_type transcription factor binding sites all genome_build hg38 cell_type H1-hESC biosample_type Cell line biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000AVA biological_replicate 1, 2 technical_replicate 1_1, 2_1, 2_2 antibody CHD7 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 30,970 downloaded_date 07/10/2024 release_date 08/06/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF338IDU_CCCAGRTCCTTGAGAAAGACATTCCTGGVT_sorted.bed.gz processed_file_md5 3f67e5c700eb90dcffc43a821321e4bc wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF338IDU_CCCAGRTCCTTGAGAAAGACATTCCTGGVT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF338IDU_CCCAGRTCCTTGAGAAAGACATTCCTGGVT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF338IDU_CCCAGRTCCTTGAGAAAGACATTCCTGGVT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF338IDU_CCCAGRTCCTTGAGAAAGACATTCCTGGVT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c8e39a3110b7882e63a9bbc4140901c4 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens H1;Original_cell_type=H1;Lab=Bradley Bernstein, Broad;System=NR;ENCODE_BED_id=ENCFF338IDU;ENCODE_bigBed_id=ENCFF126NLU;PMID=34755879;Motif_sequence=CCCAGRTCCTTGAGAAAGACATTCCTGGVT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook H1-hESC (repl. 1, 2) Motif finding CHD7 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000AVA] [TFBS]
CHD7 • K562 NGFTB7J2HIBVCI • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB7J2HIBVCI data_source Factorbook Download track Download number_of_intervals 332 bp_covered 6,972 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000AVD biological_replicate 1 technical_replicate 1_1 antibody CHD7 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 6,880 downloaded_date 07/10/2024 release_date 08/06/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF722UJW_DNTAYTMVRRKAAWTACGGTA_sorted.bed.gz processed_file_md5 945611786ee393e8493608fc43588b45 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF722UJW_DNTAYTMVRRKAAWTACGGTA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF722UJW_DNTAYTMVRRKAAWTACGGTA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF722UJW_DNTAYTMVRRKAAWTACGGTA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF722UJW_DNTAYTMVRRKAAWTACGGTA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b3d4b5f5ff29a262b4ef4ef2aad35ecc data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF722UJW;ENCODE_bigBed_id=ENCFF692YQA;PMID=34755879;Motif_sequence=DNTAYTMVRRKAAWTACGGTA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1) Motif finding CHD7 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000AVD] [Life stage: Adult] [TFBS]
CHD7 • H1-hESC NGFTBGXCL6U5ZD • Factorbook34755879 Motif finding H1-hESC TFBS Show metadata Download track Track metadata identifier NGFTBGXCL6U5ZD data_source Factorbook Download track Download number_of_intervals 3,729 bp_covered 78,309 output_type transcription factor binding sites all genome_build hg38 cell_type H1-hESC biosample_type Cell line biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000AVA biological_replicate 1, 2 technical_replicate 1_1, 2_1, 2_2 antibody CHD7 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 66,371 downloaded_date 07/10/2024 release_date 08/06/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF338IDU_ATTTACATYTCAAAGRVACAR_sorted.bed.gz processed_file_md5 5edb17a56e6cc5e3d0d76bc2a1dd506e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF338IDU_ATTTACATYTCAAAGRVACAR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF338IDU_ATTTACATYTCAAAGRVACAR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF338IDU_ATTTACATYTCAAAGRVACAR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF338IDU_ATTTACATYTCAAAGRVACAR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4d6dbd6c07f2a53c7728be039f41f9f6 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens H1;Original_cell_type=H1;Lab=Bradley Bernstein, Broad;System=NR;ENCODE_BED_id=ENCFF338IDU;ENCODE_bigBed_id=ENCFF126NLU;PMID=34755879;Motif_sequence=ATTTACATYTCAAAGRVACAR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook H1-hESC (repl. 1, 2) Motif finding CHD7 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000AVA] [TFBS]