H3K4me1 • Neuronal stem cell NGENCRKSHFNL75 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Neuronal stem cell Histone Show metadata Download track Track metadata identifier NGENCRKSHFNL75 data_source ENCODE Download track Download number_of_intervals 179,824 bp_covered 59,794,405 output_type pseudoreplicated peaks genome_build hg38 cell_type Neuronal stem cell biosample_type In vitro differentiated cells biosample_term_id CL:0000047 tissue_category Embryo encode_experiment_id ENCSR254NLC biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 4,190,321 downloaded_date 06/12/2022 release_date 11/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF169VIY.bed.gz processed_file_md5 21e45e3ba2e5534e9bde6363f7c685b6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF169VIY.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF169VIY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF169VIY/@@download/ENCFF169VIY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF169VIY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b6793b6a82d05f1ce1c1daa6aad4f4c5 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens neuronal stem cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM818039,GEO:GSM818040;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=neuronal stem cell;ENCODE_cell_slims=stem cell,neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NSC,neuronal stem cell,neural stem cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000047;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Neuronal stem cell (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR254NLC] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me1 • BE2C NGENCRLTHIMNZL • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BE2C Histone Show metadata Download track Track metadata identifier NGENCRLTHIMNZL data_source ENCODE Download track Download number_of_intervals 73,718 bp_covered 51,853,630 output_type replicated peaks genome_build hg38 cell_type BE2C biosample_type Cell line biosample_term_id EFO:0005725 tissue_category Brain encode_experiment_id ENCSR874NDX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,899,638 downloaded_date 06/12/2022 release_date 08/24/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF241OHQ.bed.gz processed_file_md5 8f495ed977ff9e1c3266892d19053935 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF241OHQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF241OHQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF241OHQ/@@download/ENCFF241OHQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF241OHQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 26e50009bd80426e99af514412d47d8b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens BE2C;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=child 2 years;Reference=NR;External_resources=GEO:GSE167740;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-28,2020-08-21;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BE2C;ENCODE_cell_slims=neuroblastoma cell,stem cell,cancer cell,neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=BE2-C,BE2C,BE(2)-C cell,BE(2)_C,BE(2) C,BE2_C;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005725;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Child track_name ENCODE BE2C (repl. 1, 2) Histone ChIP-seq H3K4me1 replicated peaks (narrowPeak) [Experiment: ENCSR874NDX] [Life stage: Child] [Histone ChIP-seq peaks]
H3K4me1 • Lower motor neurons NGENCRMKLIKSNJ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Lower motor neurons Histone Show metadata Download track Track metadata identifier NGENCRMKLIKSNJ data_source ENCODE Download track Download number_of_intervals 93,149 bp_covered 68,091,177 output_type replicated peaks genome_build hg38 cell_type Lower motor neurons biosample_type In vitro differentiated cells biosample_term_id CL:0000100 tissue_category Brain encode_experiment_id ENCSR778FKK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,378,603 downloaded_date 06/12/2022 release_date 02/09/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF368YRQ.bed.gz processed_file_md5 f9df5199b25e1dbe5b6ee361ec53a865 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF368YRQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF368YRQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF368YRQ/@@download/ENCFF368YRQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF368YRQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b9fe1f49562a2450402d5402379738fa data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens from a donor with amyotrophic lateral sclerosis| motor neuron;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:35045337;External_resources=GEO:GSE187929;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-08-24,2021-12-15;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=motor neuron;ENCODE_cell_slims=neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=motoneuron;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000100;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Lower motor neurons (repl. 1, 2) Histone ChIP-seq H3K4me1 replicated peaks (narrowPeak) [Experiment: ENCSR778FKK] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • WTC11 NGENCRNO4FACS2 • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq WTC11 Histone Show metadata Download track Track metadata identifier NGENCRNO4FACS2 data_source ENCODE Download track Download number_of_intervals 265,333 bp_covered 279,980,797 output_type pseudoreplicated peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR473GYW biological_replicate 2 technical_replicate 2_1, 2_2 antibody H3K4me1 assay Mint-ChIP-seq file_format bed narrowPeak file_size 7,872,415 downloaded_date 06/12/2022 release_date 05/12/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF599CSJ.bed.gz processed_file_md5 f2a757c535cb00f639edd1d49eb0807f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF599CSJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF599CSJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF599CSJ/@@download/ENCFF599CSJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF599CSJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c9fb71b8c81a2073f1c574e9488db1f9 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE209412;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-02-04,2021-09-27;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=fibroblast,induced pluripotent stem cell,stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 2) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR473GYW] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • A549 NGENCROEQ4TWOE • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq A549 Histone Show metadata Download track Track metadata identifier NGENCROEQ4TWOE data_source ENCODE Download track Download number_of_intervals 83,018 bp_covered 76,640,436 output_type pseudoreplicated peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR726MAP biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,125,645 downloaded_date 07/10/2025 release_date 11/13/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF923AEY.bed.gz processed_file_md5 e1f18d8e7efb3223292c4654dfe41a73 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF923AEY.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF923AEY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF923AEY/@@download/ENCFF923AEY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF923AEY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 18e406daa41e6e3014b044b86337c1c8 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 2 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91328;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR726MAP] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Naive thymus-derived CD4+ alpha-beta T cell NGENCRPXSBCAUN • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Naive thymus-derived CD4+ alpha-beta T cell Histone Show metadata Download track Track metadata identifier NGENCRPXSBCAUN data_source ENCODE Download track Download number_of_intervals 302,463 bp_covered 150,083,110 output_type pseudoreplicated peaks genome_build hg38 cell_type Naive thymus-derived CD4+ alpha-beta T cell biosample_type Primary cell biosample_term_id CL:0000895 tissue_category Blood encode_experiment_id ENCSR291JVD biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K4me1 assay Mint-ChIP-seq file_format bed narrowPeak file_size 7,640,409 downloaded_date 06/12/2022 release_date 06/18/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF638EJH.bed.gz processed_file_md5 fc3e6afcc5d60be83bd4cd7cc62375ba wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF638EJH.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF638EJH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF638EJH/@@download/ENCFF638EJH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF638EJH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c39af27077000d05447b347568d2f7bf data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (42 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 42 years;Reference=NR;External_resources=GEO:GSE187361;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-06-24;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=naive thymus-derived CD4-positive, alpha-beta T cell;ENCODE_cell_slims=T cell,leukocyte,CD4+ T cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=naive thymus-derived CD4-positive, alpha-beta T lymphocyte,Th0,naive thymus-derived CD4-positive, alpha-beta T-cell,naive thymus-derived CD4-positive, alpha-beta T-lymphocyte,T.4Nve.Sp;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000895;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Naive thymus-derived CD4+ alpha-beta T cell (repl. 1) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR291JVD] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • H9 NGENCRQ3LULWQX • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq H9 Histone Show metadata Download track Track metadata identifier NGENCRQ3LULWQX data_source ENCODE Download track Download number_of_intervals 229,361 bp_covered 79,893,001 output_type pseudoreplicated peaks genome_build hg38 cell_type H9 biosample_type Stem cell biosample_term_id EFO:0003045 tissue_category Embryo encode_experiment_id ENCSR419UJI biological_replicate 3 technical_replicate 3_1, 3_2 antibody H3K4me1 assay Mint-ChIP-seq file_format bed narrowPeak file_size 5,932,312 downloaded_date 06/12/2022 release_date 05/12/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF571GVY.bed.gz processed_file_md5 b9ed5b67e8d971f0e3fa641b997cf443 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF571GVY.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF571GVY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF571GVY/@@download/ENCFF571GVY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF571GVY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7068e23c8dc9d0427ce07940b3bc2dc7 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE177193;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-24,2020-09-08;Submitted_track_name=rep3-pr1_vs_rep3-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H9;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003045;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H9 (repl. 3) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR419UJI] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me1 • Thyroid gland NGENCRQIICKTRA • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Thyroid gland Histone Show metadata Download track Track metadata identifier NGENCRQIICKTRA data_source ENCODE Download track Download number_of_intervals 372 bp_covered 266,368 output_type pseudoreplicated peaks genome_build hg38 cell_type Thyroid gland biosample_type Tissue biosample_term_id UBERON:0002046 tissue_category Endocrine encode_experiment_id ENCSR906YES biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 8,311 downloaded_date 06/12/2022 release_date 10/30/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF248TVZ.bed.gz processed_file_md5 b62a8e311ce87a3469c0624fdd216de6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF248TVZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF248TVZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF248TVZ/@@download/ENCFF248TVZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF248TVZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d624b6266866e3356949d91ee82ab856 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens thyroid gland tissue male adult (37 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2,ENTEx;Life_stage_age=adult 37 years;Reference=PMID:32728046;External_resources=GEO:GSE96464;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-05-23;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=thyroid gland;ENCODE_cell_slims=NR;ENCODE_system_slims=endocrine system;ENCODE_biosample_term_synonyms=thyroid;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002046;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Endocrine life_stage Adult track_name ENCODE Thyroid gland (repl. 1, 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR906YES] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Osteoblast NGENCRQOW7WS5X • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Osteoblast Histone Show metadata Download track Track metadata identifier NGENCRQOW7WS5X data_source ENCODE Download track Download number_of_intervals 150,234 bp_covered 130,694,644 output_type pseudoreplicated peaks genome_build hg38 cell_type Osteoblast biosample_type Primary cell biosample_term_id CL:0000062 tissue_category Bone encode_experiment_id ENCSR000APJ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,789,330 downloaded_date 06/12/2022 release_date 10/30/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF489REW.bed.gz processed_file_md5 78d4becd1cf5767b8d738a6b8450685d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF489REW.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF489REW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF489REW/@@download/ENCFF489REW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF489REW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 301490276040c7e5d70aac6c0cae50c6 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens osteoblast;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM733704,UCSC-ENCODE-hg19:wgEncodeEH001045;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=osteoblast;ENCODE_cell_slims=connective tissue cell;ENCODE_system_slims=skeletal system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000062;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Skeletal life_stage Unknown track_name ENCODE Osteoblast (repl. 1, 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000APJ] [Histone ChIP-seq peaks]
H3K4me1 • Left ventricle NGENCRQSANP3XO • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Left ventricle Histone Show metadata Download track Track metadata identifier NGENCRQSANP3XO data_source ENCODE Download track Download number_of_intervals 147,088 bp_covered 50,868,503 output_type pseudoreplicated peaks genome_build hg38 cell_type Left ventricle biosample_type Tissue biosample_term_id UBERON:0002084 tissue_category Heart encode_experiment_id ENCSR111WGZ biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,395,225 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF122DQS.bed.gz processed_file_md5 af65aaf10b9c9da9e57f3a8133979fd3 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF122DQS.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF122DQS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF122DQS/@@download/ENCFF122DQS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF122DQS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5cd33584f59310043cdbbc7ec7f18768 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens heart left ventricle tissue male adult (34 years);Lab=Bing Ren, UCSD;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 34 years;Reference=PMID:32728046;External_resources=GEO:GSM910575;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=heart left ventricle;ENCODE_cell_slims=NR;ENCODE_system_slims=circulatory system;ENCODE_biosample_term_synonyms=cardiac left ventricle,left cardiac ventricle,left ventricle of heart,left ventricle;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002084;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Left ventricle (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR111WGZ] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • HCT116 NGENCRSN4EAUWN • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq HCT116 Histone Show metadata Download track Track metadata identifier NGENCRSN4EAUWN data_source ENCODE Download track Download number_of_intervals 111,268 bp_covered 175,517,579 output_type pseudoreplicated peaks genome_build hg38 cell_type HCT116 biosample_type Cell line biosample_term_id EFO:0002824 tissue_category Digestive encode_experiment_id ENCSR260MFW biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K4me1 assay Mint-ChIP-seq file_format bed narrowPeak file_size 3,285,485 downloaded_date 07/10/2025 release_date 03/13/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF243AWN.bed.gz processed_file_md5 d2bc7e2fc7a4247c8b9a0b84639b3a19 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF243AWN.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF243AWN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF243AWN/@@download/ENCFF243AWN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF243AWN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2ca61a9b7c7aa9450961bdc8fa4e8c56 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens SUPT16H treated with 1 _M 5-Phenyl-1H-indole-3-acetic acid for 6 hours;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=Degron;Life_stage_age=adult 48 years;Reference=NR;External_resources=GEO:GSE209380;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-03-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HCT116;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=HCT-116 cell,HCT116 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002824;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE HCT116 (repl. 1) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR260MFW] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Spleen NGENCRTDCL357P • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Spleen Histone Show metadata Download track Track metadata identifier NGENCRTDCL357P data_source ENCODE Download track Download number_of_intervals 94,608 bp_covered 121,707,769 output_type replicated peaks genome_build hg38 cell_type Spleen biosample_type Tissue biosample_term_id UBERON:0002106 tissue_category Immune Organ encode_experiment_id ENCSR659RJP biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1, 2_2 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,337,110 downloaded_date 06/12/2022 release_date 08/14/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF934NZF.bed.gz processed_file_md5 f294b3d6110230502b04394549cc5cbe wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF934NZF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF934NZF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF934NZF/@@download/ENCFF934NZF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF934NZF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d967c33dd90caa3e5aabff9328145dae data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens spleen tissue female adult (53 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2,ENTEx;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE101249;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-11-03;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=spleen;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system,immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002106;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE Spleen (repl. 1, 2) Histone ChIP-seq H3K4me1 replicated peaks (narrowPeak) [Experiment: ENCSR659RJP] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Spleen NGENCRUNORAC3P • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Spleen Histone Show metadata Download track Track metadata identifier NGENCRUNORAC3P data_source ENCODE Download track Download number_of_intervals 127,131 bp_covered 175,738,201 output_type pseudoreplicated peaks genome_build hg38 cell_type Spleen biosample_type Tissue biosample_term_id UBERON:0002106 tissue_category Immune Organ encode_experiment_id ENCSR479APW biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,933,304 downloaded_date 06/12/2022 release_date 07/23/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF006WUJ.bed.gz processed_file_md5 5a9f5e2e160c9918f3474050ce1277f5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF006WUJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF006WUJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF006WUJ/@@download/ENCFF006WUJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF006WUJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 afeebb02c0dfd062b44584a5ad71080b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens spleen tissue male adult (26 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 26 years;Reference=NR;External_resources=GEO:GSE167817;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-09-03;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=spleen;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system,immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002106;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE Spleen (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR479APW] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • iPS-20b NGENCRV44LMWZN • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq iPS-20b Histone Show metadata Download track Track metadata identifier NGENCRV44LMWZN data_source ENCODE Download track Download number_of_intervals 147,397 bp_covered 96,549,871 output_type pseudoreplicated peaks genome_build hg38 cell_type iPS-20b biosample_type Cell line biosample_term_id EFO:0007108 tissue_category iPSC encode_experiment_id ENCSR996FWI biological_replicate 1, 2 technical_replicate 1_4, 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,462,306 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF021MLT.bed.gz processed_file_md5 20e2556b8bafd530038c8e367fc18698 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF021MLT.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF021MLT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF021MLT/@@download/ENCFF021MLT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF021MLT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3d6cbfa7f7254e213e784b3b5fe03044 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens iPS-20b;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 55 years;Reference=PMID:32728046;External_resources=GEO:GSM772845,GEO:GSM772804;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=iPS-20b;ENCODE_cell_slims=induced pluripotent stem cell,stem cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007108;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Stem Cell life_stage Adult track_name ENCODE iPS-20b (repl. 1, 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR996FWI] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Gastrocnemius medialis NGENCRXGSL2JYN • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Gastrocnemius medialis Histone Show metadata Download track Track metadata identifier NGENCRXGSL2JYN data_source ENCODE Download track Download number_of_intervals 118,115 bp_covered 130,029,026 output_type pseudoreplicated peaks genome_build hg38 cell_type Gastrocnemius medialis biosample_type Tissue biosample_term_id UBERON:0011907 tissue_category Skeletal Muscle encode_experiment_id ENCSR161HZJ biological_replicate 2 technical_replicate 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,885,942 downloaded_date 06/12/2022 release_date 10/29/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF898NYH.bed.gz processed_file_md5 f0500bbb1a33cbccfc88e367cedebe93 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF898NYH.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF898NYH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF898NYH/@@download/ENCFF898NYH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF898NYH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 121ded9bb502bf1a6a8103977da6148e data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens gastrocnemius medialis tissue male adult (54 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2,ENTEx;Life_stage_age=adult 54 years;Reference=PMID:32728046;External_resources=GEO:GSE95957;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-24,2016-06-02;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=gastrocnemius medialis;ENCODE_cell_slims=NR;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=medial head of gastrocnemius muscle,medial head of gastrocnemius,caput mediale (musculus gastrocnemius),caput mediale musculus gastrocnemii;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0011907;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Muscular life_stage Adult track_name ENCODE Gastrocnemius medialis (repl. 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR161HZJ] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • A549 NGENCRXJUS7ELB • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq A549 Histone Show metadata Download track Track metadata identifier NGENCRXJUS7ELB data_source ENCODE Download track Download number_of_intervals 82,880 bp_covered 82,944,882 output_type pseudoreplicated peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR404OLV biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,032,402 downloaded_date 07/10/2025 release_date 11/13/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF360GCU.bed.gz processed_file_md5 2fce01caa25f9972517d7caf5306a0e6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF360GCU.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF360GCU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF360GCU/@@download/ENCFF360GCU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF360GCU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ed2908116986893c645f81b160a68522 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 8 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91256;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR404OLV] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • BLaER1 NGENCRXR5GY4BM • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENCRXR5GY4BM data_source ENCODE Download track Download number_of_intervals 148,733 bp_covered 258,880,486 output_type replicated peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR580GOD biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 4,225,143 downloaded_date 05/15/2024 release_date 02/23/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF291OJS.bed.gz processed_file_md5 67f0f1c07c5434be12e04e6d1e6d701e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF291OJS.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF291OJS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF291OJS/@@download/ENCFF291OJS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF291OJS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 521eb31be68f8de7ee1adc9992002992 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 36 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE257862;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 1, 2) Histone ChIP-seq H3K4me1 replicated peaks (narrowPeak) [Experiment: ENCSR580GOD] [Histone ChIP-seq peaks]
H3K4me1 • KOPT-K1 NGENCRY4A5P46C • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq KOPT-K1 Histone Show metadata Download track Track metadata identifier NGENCRY4A5P46C data_source ENCODE Download track Download number_of_intervals 94,185 bp_covered 125,649,340 output_type pseudoreplicated peaks genome_build hg38 cell_type KOPT-K1 biosample_type Cell line biosample_term_id EFO:0006283 tissue_category Blood encode_experiment_id ENCSR630IBN biological_replicate 2 technical_replicate 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,616,205 downloaded_date 06/12/2022 release_date 10/29/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF377KJI.bed.gz processed_file_md5 dbc6978ad7c493f25f3352d1bdd8d9dc wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF377KJI.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF377KJI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF377KJI/@@download/ENCFF377KJI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF377KJI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 11f64bf1e15e05b4c2e8ac784bfc0cc2 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens KOPT-K1;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE174996;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2018-03-19,2015-08-03;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=KOPT-K1;ENCODE_cell_slims=T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=KOPTK1;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0006283;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE KOPT-K1 (repl. 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR630IBN] [Histone ChIP-seq peaks]
H3K4me1 • Naive thymus-derived CD4+ alpha-beta T cell NGENCRYRWVFNNH • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Naive thymus-derived CD4+ alpha-beta T cell Histone Show metadata Download track Track metadata identifier NGENCRYRWVFNNH data_source ENCODE Download track Download number_of_intervals 79,991 bp_covered 106,642,932 output_type replicated peaks genome_build hg38 cell_type Naive thymus-derived CD4+ alpha-beta T cell biosample_type Primary cell biosample_term_id CL:0000895 tissue_category Blood encode_experiment_id ENCSR430ULY biological_replicate 1, 2 technical_replicate 1_4, 2_2 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,156,087 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF118OED.bed.gz processed_file_md5 97154bd2122734befeab66bb97e19bf1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF118OED.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF118OED.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF118OED/@@download/ENCFF118OED.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF118OED.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8176c72cdd8dba12a83bfd7d6ec7658e data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM772851,GEO:GSM997229;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=false;ENCODE_biosample_term_name=naive thymus-derived CD4-positive, alpha-beta T cell;ENCODE_cell_slims=T cell,leukocyte,CD4+ T cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=naive thymus-derived CD4-positive, alpha-beta T lymphocyte,Th0,naive thymus-derived CD4-positive, alpha-beta T-cell,naive thymus-derived CD4-positive, alpha-beta T-lymphocyte,T.4Nve.Sp;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000895;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE Naive thymus-derived CD4+ alpha-beta T cell (repl. 1, 2) Histone ChIP-seq H3K4me1 replicated peaks (narrowPeak) [Experiment: ENCSR430ULY] [Histone ChIP-seq peaks]
H3K4me1 • A549 NGENCRYZ5BRIIT • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq A549 Histone Show metadata Download track Track metadata identifier NGENCRYZ5BRIIT data_source ENCODE Download track Download number_of_intervals 88,097 bp_covered 81,721,713 output_type pseudoreplicated peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR949IDI biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,254,081 downloaded_date 07/10/2025 release_date 12/04/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF140FPP.bed.gz processed_file_md5 11ac59938fea634fea68072fecd551a5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF140FPP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF140FPP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF140FPP/@@download/ENCFF140FPP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF140FPP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 159e114cd4aa94ceb791c4c6390ecc17 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 4 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91363;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR949IDI] [Life stage: Adult] [Histone ChIP-seq peaks]