H3K4me1 • Smooth muscle tissue NGRMPT5YZY65QZ • ROADMAP25693563 ChIP-seq Smooth muscle tissue Histone Show metadata Download track Track metadata identifier NGRMPT5YZY65QZ data_source ROADMAP Download track Download number_of_intervals 73,671 bp_covered 308,410,113 output_type peaks genome_build hg38 cell_type Smooth muscle tissue biosample_type Primary tissue biosample_term_id UBERON:0001135 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed gappedPeak-lifted file_size 3,991,058 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/28/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/BI.Duodenum_Smooth_Muscle.H3K4me1.160.gappedPeak.lifted.bed.gz processed_file_md5 031f1d77b238d2f75b9e5e46430ff8c1 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/BI.Duodenum_Smooth_Muscle.H3K4me1.160.gappedPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/BI.Duodenum_Smooth_Muscle.H3K4me1.160.gappedPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/gappedPeak/BI.Duodenum_Smooth_Muscle.H3K4me1.160.gappedPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/gappedpeak/BI.Duodenum_Smooth_Muscle.H3K4me1.160.gappedPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/gappedpeak/ raw_file_md5 986ea5295dd0915e47e04b36a968faf1 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=2015;Original_cell_type=Duodenum Smooth Muscle;Donor=160;schema=BED3+15;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=yes system_category Digestive life_stage Unknown track_name ROADMAP Smooth muscle tissue ChIP-seq H3K4me1-histone-mark peaks (gappedPeak-lifted) [Histone ChIP-seq peaks]
H3K4me1 • HUES48 NGRMPTBEPCX2NL • ROADMAP25693563 ChIP-seq HUES48 Histone Show metadata Download track Track metadata identifier NGRMPTBEPCX2NL data_source ROADMAP Download track Download number_of_intervals 320,309 bp_covered 151,177,177 output_type peaks genome_build hg38 cell_type HUES48 biosample_type Primary culture biosample_term_id EFO:0007083 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed narrowPeak-lifted file_size 10,171,938 downloaded_date 08/15/2018 release_date 11/30/2014 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/2/BI.HUES48.H3K4me1.Lib_MC_20101025_07--ChIP_MC_20101020_07_ES_cell_HUES_48_H3K4Me1.narrowPeak.lifted.bed.gz processed_file_md5 a80ee1ec43d7c5956cf6e5548d30a4ea wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/2/BI.HUES48.H3K4me1.Lib_MC_20101025_07--ChIP_MC_20101020_07_ES_cell_HUES_48_H3K4Me1.narrowPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/2/BI.HUES48.H3K4me1.Lib_MC_20101025_07--ChIP_MC_20101020_07_ES_cell_HUES_48_H3K4Me1.narrowPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/narrowPeak/BI.HUES48.H3K4me1.Lib_MC_20101025_07--ChIP_MC_20101020_07_ES_cell_HUES_48_H3K4Me1.narrowPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/narrowpeak/BI.HUES48.H3K4me1.Lib_MC_20101025_07--ChIP_MC_20101020_07_ES_cell_HUES_48_H3K4Me1.narrowPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/narrowpeak/ raw_file_md5 05c8a62fb194ae468c10ede50d832656 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=2015;Original_cell_type=HUES48;Donor=Lib_MC_20101025_07--ChIP_MC_20101020_07_ES_cell_HUES_48_H3K4Me1;schema=BED3+10;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=EFO:0007083;is_hg38_lifted=yes system_category Embryo life_stage Embryonic track_name ROADMAP HUES48 ChIP-seq H3K4me1-histone-mark peaks (narrowPeak-lifted) [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me1 • CD34+ NGRMPTCBSJ2PXR • ROADMAP25693563 ChIP-seq CD34+ Histone Show metadata Download track Track metadata identifier NGRMPTCBSJ2PXR data_source ROADMAP Download track Download number_of_intervals 440,625 bp_covered 475,484,035 output_type peaks genome_build hg38 cell_type CD34+ biosample_type Primary cell biosample_term_id CL:0001059 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed broadPeak-lifted file_size 14,606,041 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/27/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/1/BI.CD34_Primary_Cells.H3K4me1.CD34_39889.broadPeak.lifted.bed.gz processed_file_md5 e7d4125b326e98e18045ea1440e4d0f3 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/1/BI.CD34_Primary_Cells.H3K4me1.CD34_39889.broadPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/1/BI.CD34_Primary_Cells.H3K4me1.CD34_39889.broadPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/1/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/broadPeak/BI.CD34_Primary_Cells.H3K4me1.CD34_39889.broadPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/broadpeak/BI.CD34_Primary_Cells.H3K4me1.CD34_39889.broadPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/broadpeak/ raw_file_md5 f31ac0b80cca60c9cd61e78cdcee5ddb data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=2015;Original_cell_type=CD34 Primary Cells;Donor=CD34_39889;schema=BED3+9;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=yes system_category Cardiovascular life_stage Unknown track_name ROADMAP CD34+ ChIP-seq H3K4me1-histone-mark peaks (broadPeak-lifted) [Histone ChIP-seq peaks]
H3K4me1 • Neurosphere cultured cell ganglionic eminence derived NGRMPTD2JSWRN5 • ROADMAP25693563 ChIP-seq Neurosphere cultured cell ganglionic eminence derived Histone Show metadata Download track Track metadata identifier NGRMPTD2JSWRN5 data_source ROADMAP Download track Download number_of_intervals 152,412 bp_covered 68,222,756 output_type peaks genome_build hg38 cell_type Neurosphere cultured cell ganglionic eminence derived biosample_type Stem cell biosample_term_id CL:0000047 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed narrowPeak-lifted file_size 4,176,539 downloaded_date 08/15/2018 release_date 11/30/2014 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/UCSF-UBC.Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived.H3K4me1.HuFNSC02.narrowPeak.lifted.bed.gz processed_file_md5 d9c1d51d4d9dac097648d680d6e31874 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/UCSF-UBC.Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived.H3K4me1.HuFNSC02.narrowPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/UCSF-UBC.Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived.H3K4me1.HuFNSC02.narrowPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/narrowPeak/UCSF-UBC.Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived.H3K4me1.HuFNSC02.narrowPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/narrowpeak/UCSF-UBC.Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived.H3K4me1.HuFNSC02.narrowPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/narrowpeak/ raw_file_md5 5537e997cd1b7c0ba4c8c96fd829d35e data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=2015;Original_cell_type=Neurosphere Cultured Cells Ganglionic Eminence Derived;Donor=HuFNSC02;schema=BED3+10;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=yes system_category Nervous life_stage Unknown track_name ROADMAP Neurosphere cultured cell ganglionic eminence derived ChIP-seq H3K4me1-histone-mark peaks (narrowPeak-lifted) [Histone ChIP-seq peaks]
H3K4me1 • Adipose NGRMPTDDOGILKB • ROADMAP25693563 ChIP-seq Adipose Histone Show metadata Download track Track metadata identifier NGRMPTDDOGILKB data_source ROADMAP Download track Download number_of_intervals 120,496 bp_covered 374,300,261 output_type peaks genome_build hg38 cell_type Adipose biosample_type Primary tissue biosample_term_id NCIT:C12472 tissue_category Adipose encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed gappedPeak-lifted file_size 6,780,732 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/28/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/BI.Adipose_Nuclei.H3K4me1.95.gappedPeak.lifted.bed.gz processed_file_md5 e52afc2b1f2ceeadbcd3babb827c46bb wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/BI.Adipose_Nuclei.H3K4me1.95.gappedPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/BI.Adipose_Nuclei.H3K4me1.95.gappedPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/gappedPeak/BI.Adipose_Nuclei.H3K4me1.95.gappedPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/gappedpeak/BI.Adipose_Nuclei.H3K4me1.95.gappedPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/gappedpeak/ raw_file_md5 797ea079bec31fd61e62cf3836fbaa30 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=2015;Original_cell_type=Adipose Nuclei;Donor=95;schema=BED3+15;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=yes system_category Integumentary life_stage Unknown track_name ROADMAP Adipose ChIP-seq H3K4me1-histone-mark peaks (gappedPeak-lifted) [Histone ChIP-seq peaks]
H3K4me1 • UCSF-4star NGRMPTE4Z2B3DC • ROADMAP25693563 ChIP-seq UCSF-4star Histone Show metadata Download track Track metadata identifier NGRMPTE4Z2B3DC data_source ROADMAP Download track Download number_of_intervals 428,257 bp_covered 656,782,020 output_type peaks genome_build hg38 cell_type UCSF-4star biosample_type Stem cell biosample_term_id CL:0002322 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed broadPeak-lifted file_size 14,467,695 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/27/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/UCSF-UBC.UCSF-4Star.H3K4me1.A19296.broadPeak.lifted.bed.gz processed_file_md5 920688e42daa47ea8ac060847224b806 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/UCSF-UBC.UCSF-4Star.H3K4me1.A19296.broadPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/UCSF-UBC.UCSF-4Star.H3K4me1.A19296.broadPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/broadPeak/UCSF-UBC.UCSF-4Star.H3K4me1.A19296.broadPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/broadpeak/UCSF-UBC.UCSF-4Star.H3K4me1.A19296.broadPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/broadpeak/ raw_file_md5 c27695d8bc983ea33a4ed1a8a491f34c data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=2015;Original_cell_type=UCSF-4Star;Donor=A19296;schema=BED3+9;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=yes system_category Embryo life_stage Embryonic track_name ROADMAP UCSF-4star ChIP-seq H3K4me1-histone-mark peaks (broadPeak-lifted) [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me1 • Smooth muscle tissue NGRMPTECNEAPFS • ROADMAP25693563 ChIP-seq Smooth muscle tissue Histone Show metadata Download track Track metadata identifier NGRMPTECNEAPFS data_source ROADMAP Download track Download number_of_intervals 320,062 bp_covered 397,677,114 output_type peaks genome_build hg38 cell_type Smooth muscle tissue biosample_type Primary tissue biosample_term_id UBERON:0001135 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed broadPeak-lifted file_size 10,196,384 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/27/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/BI.Rectal_Smooth_Muscle.H3K4me1.30.broadPeak.lifted.bed.gz processed_file_md5 d7339fcb6906a64ee1cecc88d7925571 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/BI.Rectal_Smooth_Muscle.H3K4me1.30.broadPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/BI.Rectal_Smooth_Muscle.H3K4me1.30.broadPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/broadPeak/BI.Rectal_Smooth_Muscle.H3K4me1.30.broadPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/broadpeak/BI.Rectal_Smooth_Muscle.H3K4me1.30.broadPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/broadpeak/ raw_file_md5 7fe765e3b33d95eb8d83ecc76b59e12c data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=2015;Original_cell_type=Rectal smooth muscle;Donor=30;schema=BED3+9;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=yes system_category Digestive life_stage Unknown track_name ROADMAP Smooth muscle tissue ChIP-seq H3K4me1-histone-mark peaks (broadPeak-lifted) [Histone ChIP-seq peaks]
H3K4me1 • IMR-90 NGRMPTFHCXIGB4 • ROADMAP25693563 ChIP-seq IMR-90 Histone Show metadata Download track Track metadata identifier NGRMPTFHCXIGB4 data_source ROADMAP Download track Download number_of_intervals 288,156 bp_covered 363,965,454 output_type peaks genome_build hg38 cell_type IMR-90 biosample_type Cell line biosample_term_id EFO:0001196 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed broadPeak-lifted file_size 9,750,435 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/27/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/UCSD.IMR90.H3K4me1.SK04.broadPeak.lifted.bed.gz processed_file_md5 9ca44bdf554b81ec9da831d6bcd84043 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/UCSD.IMR90.H3K4me1.SK04.broadPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/UCSD.IMR90.H3K4me1.SK04.broadPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/broadPeak/UCSD.IMR90.H3K4me1.SK04.broadPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/broadpeak/UCSD.IMR90.H3K4me1.SK04.broadPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/broadpeak/ raw_file_md5 050b9ef2c14f51f216212b3347c3fba4 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=2015;Original_cell_type=IMR 90;Donor=SK04;schema=BED3+9;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=EFO:0001196;is_hg38_lifted=yes system_category Respiratory life_stage Unknown track_name ROADMAP IMR-90 ChIP-seq H3K4me1-histone-mark peaks (broadPeak-lifted) [Histone ChIP-seq peaks]
H3K4me1 • Mucosa NGRMPTFPYQTKOB • ROADMAP25693563 ChIP-seq Mucosa Histone Show metadata Download track Track metadata identifier NGRMPTFPYQTKOB data_source ROADMAP Download track Download number_of_intervals 77,224 bp_covered 295,219,005 output_type peaks genome_build hg38 cell_type Mucosa biosample_type Primary tissue biosample_term_id UBERON:0000344 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed gappedPeak-lifted file_size 4,403,067 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/28/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/BI.Rectal_Mucosa.H3K4me1.29.gappedPeak.lifted.bed.gz processed_file_md5 d5c037c0e9c7fde72fbc4eff6502d355 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/BI.Rectal_Mucosa.H3K4me1.29.gappedPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/BI.Rectal_Mucosa.H3K4me1.29.gappedPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/gappedPeak/BI.Rectal_Mucosa.H3K4me1.29.gappedPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/gappedpeak/BI.Rectal_Mucosa.H3K4me1.29.gappedPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/gappedpeak/ raw_file_md5 5fb18886cc17f442c35db6c7feb27ab1 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=2015;Original_cell_type=Mucosa of rectum;Donor=29;schema=BED3+15;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=yes system_category Digestive life_stage Unknown track_name ROADMAP Mucosa ChIP-seq H3K4me1-histone-mark peaks (gappedPeak-lifted) [Histone ChIP-seq peaks]
H3K4me1 • Adipose NGRMPTGDKCQEL5 • ROADMAP25693563 ChIP-seq Adipose Histone Show metadata Download track Track metadata identifier NGRMPTGDKCQEL5 data_source ROADMAP Download track Download number_of_intervals 451,596 bp_covered 412,907,315 output_type peaks genome_build hg38 cell_type Adipose biosample_type Primary tissue biosample_term_id NCIT:C12472 tissue_category Adipose encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed broadPeak-lifted file_size 14,615,265 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/27/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/1/BI.Adipose_Nuclei.H3K4me1.7.broadPeak.lifted.bed.gz processed_file_md5 3015021379dda3c321e32f27963ccb47 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/1/BI.Adipose_Nuclei.H3K4me1.7.broadPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/1/BI.Adipose_Nuclei.H3K4me1.7.broadPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/1/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/broadPeak/BI.Adipose_Nuclei.H3K4me1.7.broadPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/broadpeak/BI.Adipose_Nuclei.H3K4me1.7.broadPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/broadpeak/ raw_file_md5 a4129d270763f3080c028bcbef93aaeb data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=2015;Original_cell_type=Adipose Nuclei;Donor=7;schema=BED3+9;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=yes system_category Integumentary life_stage Unknown track_name ROADMAP Adipose ChIP-seq H3K4me1-histone-mark peaks (broadPeak-lifted) [Histone ChIP-seq peaks]
H3K4me1 • CD34+ NGRMPTISAAHALC • ROADMAP25693563 ChIP-seq CD34+ Histone Show metadata Download track Track metadata identifier NGRMPTISAAHALC data_source ROADMAP Download track Download number_of_intervals 89,298 bp_covered 244,965,532 output_type peaks genome_build hg38 cell_type CD34+ biosample_type Primary cell biosample_term_id CL:0001059 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed gappedPeak-lifted file_size 5,067,045 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/28/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/BI.CD34_Cultured_Cells.H3K4me1.123.gappedPeak.lifted.bed.gz processed_file_md5 6df241b6bf8371103a0505d511660b19 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/BI.CD34_Cultured_Cells.H3K4me1.123.gappedPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/BI.CD34_Cultured_Cells.H3K4me1.123.gappedPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/gappedPeak/BI.CD34_Cultured_Cells.H3K4me1.123.gappedPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/gappedpeak/BI.CD34_Cultured_Cells.H3K4me1.123.gappedPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/gappedpeak/ raw_file_md5 182e352dcaac18c4db159105202e4917 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=2015;Original_cell_type=CD34 Cultured Cells;Donor=123;schema=BED3+15;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=yes system_category Cardiovascular life_stage Unknown track_name ROADMAP CD34+ ChIP-seq H3K4me1-histone-mark peaks (gappedPeak-lifted) [Histone ChIP-seq peaks]
H3K4me1 • Adrenal gland NGRMPTJLR4RNZ3 • ROADMAP25693563 ChIP-seq Adrenal gland Histone Show metadata Download track Track metadata identifier NGRMPTJLR4RNZ3 data_source ROADMAP Download track Download number_of_intervals 238,978 bp_covered 378,629,601 output_type peaks genome_build hg38 cell_type Adrenal gland biosample_type Primary tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed broadPeak-lifted file_size 8,191,032 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/27/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/UW.Fetal_Adrenal_Gland.H3K4me1.H-24800.Histone.DS23065.broadPeak.lifted.bed.gz processed_file_md5 241016f15a6db282c3971a6fed45c264 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/UW.Fetal_Adrenal_Gland.H3K4me1.H-24800.Histone.DS23065.broadPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/UW.Fetal_Adrenal_Gland.H3K4me1.H-24800.Histone.DS23065.broadPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/broadPeak/UW.Fetal_Adrenal_Gland.H3K4me1.H-24800.Histone.DS23065.broadPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/broadpeak/UW.Fetal_Adrenal_Gland.H3K4me1.H-24800.Histone.DS23065.broadPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/broadpeak/ raw_file_md5 3ef4b09554bbd12413c8c80eeea88501 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=2015;Original_cell_type=Fetal Adrenal Gland;Donor=H-24800.Histone.DS23065;schema=BED3+9;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=yes system_category Endocrine life_stage Fetal track_name ROADMAP Adrenal gland ChIP-seq H3K4me1-histone-mark peaks (broadPeak-lifted) [Life stage: Fetal] [Histone ChIP-seq peaks]
H3K4me1 • CD8+ memory T cell NGRMPTK6FD7CWK • ROADMAP25693563 ChIP-seq CD8+ memory T cell Histone Show metadata Download track Track metadata identifier NGRMPTK6FD7CWK data_source ROADMAP Download track Download number_of_intervals 48,268 bp_covered 287,208,206 output_type peaks genome_build hg38 cell_type CD8+ memory T cell biosample_type Primary cell biosample_term_id NCIT:C201812 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed gappedPeak-lifted file_size 2,863,007 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/28/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/BI.CD8_Memory_Primary_Cells.H3K4me1.Donor_100_7_pooled_leukopaks_Jan_7_2011.gappedPeak.lifted.bed.gz processed_file_md5 376c8ce142f58d5bec68736969ba96ce wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/BI.CD8_Memory_Primary_Cells.H3K4me1.Donor_100_7_pooled_leukopaks_Jan_7_2011.gappedPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/BI.CD8_Memory_Primary_Cells.H3K4me1.Donor_100_7_pooled_leukopaks_Jan_7_2011.gappedPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/gappedPeak/BI.CD8_Memory_Primary_Cells.H3K4me1.Donor_100_7_pooled_leukopaks_Jan_7_2011.gappedPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/gappedpeak/BI.CD8_Memory_Primary_Cells.H3K4me1.Donor_100_7_pooled_leukopaks_Jan_7_2011.gappedPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/gappedpeak/ raw_file_md5 a35f2f5e2c62e55508cd2b87e8623756 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=2015;Original_cell_type=CD8 Memory Primary Cells;Donor=100_7_pooled_leukopaks_Jan_7_2011;schema=BED3+15;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=yes system_category Cardiovascular life_stage Unknown track_name ROADMAP CD8+ memory T cell ChIP-seq H3K4me1-histone-mark peaks (gappedPeak-lifted) [Histone ChIP-seq peaks]
H3K4me1 • Kidney NGRMPTL5SUKKOZ • ROADMAP25693563 ChIP-seq Kidney Histone Show metadata Download track Track metadata identifier NGRMPTL5SUKKOZ data_source ROADMAP Download track Download number_of_intervals 144,212 bp_covered 56,550,429 output_type peaks genome_build hg38 cell_type Kidney biosample_type Primary tissue biosample_term_id UBERON:0002113 tissue_category Urinary encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed narrowPeak-lifted file_size 4,302,628 downloaded_date 08/15/2018 release_date 11/30/2014 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/1/BI.Adult_Kidney.H3K4me1.27.narrowPeak.lifted.bed.gz processed_file_md5 21c51ce7d7024c096f1912ac85699f78 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/1/BI.Adult_Kidney.H3K4me1.27.narrowPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/1/BI.Adult_Kidney.H3K4me1.27.narrowPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/narrowPeak/BI.Adult_Kidney.H3K4me1.27.narrowPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/narrowpeak/BI.Adult_Kidney.H3K4me1.27.narrowPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/narrowpeak/ raw_file_md5 284abe199d4340b64c5930a0bde770b0 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=2015;Original_cell_type=Adult Kidney;Donor=27;schema=BED3+10;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=yes system_category Renal life_stage Adult track_name ROADMAP Kidney ChIP-seq H3K4me1-histone-mark peaks (narrowPeak-lifted) [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • CD4+ CD25- CD45RO+ memory cell NGRMPTL7EZMAWO • ROADMAP25693563 ChIP-seq CD4+ CD25- CD45RO+ memory cell Histone Show metadata Download track Track metadata identifier NGRMPTL7EZMAWO data_source ROADMAP Download track Download number_of_intervals 363,333 bp_covered 566,982,337 output_type peaks genome_build hg38 cell_type CD4+ CD25- CD45RO+ memory cell biosample_type Primary cell biosample_term_id CL:0000897 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed broadPeak-lifted file_size 11,628,708 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/27/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/1/BI.CD4+_CD25-_CD45RO+_Memory_Primary_Cells.H3K4me1.Donor_62.broadPeak.lifted.bed.gz processed_file_md5 750ffd31cf0f94c8edbbd701bfda9a96 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/1/BI.CD4+_CD25-_CD45RO+_Memory_Primary_Cells.H3K4me1.Donor_62.broadPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/1/BI.CD4+_CD25-_CD45RO+_Memory_Primary_Cells.H3K4me1.Donor_62.broadPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/1/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/broadPeak/BI.CD4+_CD25-_CD45RO+_Memory_Primary_Cells.H3K4me1.Donor_62.broadPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/broadpeak/BI.CD4+_CD25-_CD45RO+_Memory_Primary_Cells.H3K4me1.Donor_62.broadPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/broadpeak/ raw_file_md5 928f38e35449717146228116f579540d data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=2015;Original_cell_type=CD4+ CD25- CD45RO+ Memory Primary Cells;Donor=62;schema=BED3+9;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=yes system_category Cardiovascular life_stage Unknown track_name ROADMAP CD4+ CD25- CD45RO+ memory cell ChIP-seq H3K4me1-histone-mark peaks (broadPeak-lifted) [Histone ChIP-seq peaks]
H3K4me1 • iPS DF 6 NGRMPTLKCNVETH • ROADMAP25693563 ChIP-seq iPS DF 6 Histone Show metadata Download track Track metadata identifier NGRMPTLKCNVETH data_source ROADMAP Download track Download number_of_intervals 138,770 bp_covered 246,162,149 output_type peaks genome_build hg38 cell_type iPS DF 6 biosample_type Primary culture biosample_term_id CL:0002248 tissue_category iPSC encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed gappedPeak-lifted file_size 7,083,792 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/28/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.iPS_DF_6.9.H3K4me1.SK397.gappedPeak.lifted.bed.gz processed_file_md5 8cecfb470df882cda6f2b77f2055fcc1 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.iPS_DF_6.9.H3K4me1.SK397.gappedPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.iPS_DF_6.9.H3K4me1.SK397.gappedPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/gappedPeak/UCSD.iPS_DF_6.9.H3K4me1.SK397.gappedPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/gappedpeak/UCSD.iPS_DF_6.9.H3K4me1.SK397.gappedPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/gappedpeak/ raw_file_md5 979a0d42bc840f7cf2d22a2319b49fa9 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=2015;Original_cell_type=iPS DF 6;Donor=SK397;schema=BED3+15;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=yes system_category Stem Cell life_stage Unknown track_name ROADMAP iPS DF 6 ChIP-seq H3K4me1-histone-mark peaks (gappedPeak-lifted) [Histone ChIP-seq peaks]
H3K4me1 • Neurosphere cultured cell ganglionic eminence derived NGRMPTN6STOQPG • ROADMAP25693563 ChIP-seq Neurosphere cultured cell ganglionic eminence derived Histone Show metadata Download track Track metadata identifier NGRMPTN6STOQPG data_source ROADMAP Download track Download number_of_intervals 132,351 bp_covered 332,566,607 output_type peaks genome_build hg38 cell_type Neurosphere cultured cell ganglionic eminence derived biosample_type Stem cell biosample_term_id CL:0000047 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed gappedPeak-lifted file_size 7,236,057 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/28/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSF-UBC.Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived.H3K4me1.HuFNSC04.gappedPeak.lifted.bed.gz processed_file_md5 14840e30af3ae80fa801ce37a778dea5 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSF-UBC.Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived.H3K4me1.HuFNSC04.gappedPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSF-UBC.Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived.H3K4me1.HuFNSC04.gappedPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/gappedPeak/UCSF-UBC.Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived.H3K4me1.HuFNSC04.gappedPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/gappedpeak/UCSF-UBC.Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived.H3K4me1.HuFNSC04.gappedPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/gappedpeak/ raw_file_md5 cacd5e59a5cff6d02adbd2d75ebcdafe data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=2015;Original_cell_type=Neurosphere Cultured Cells Ganglionic Eminence Derived;Donor=HuFNSC04;schema=BED3+15;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=yes system_category Nervous life_stage Unknown track_name ROADMAP Neurosphere cultured cell ganglionic eminence derived ChIP-seq H3K4me1-histone-mark peaks (gappedPeak-lifted) [Histone ChIP-seq peaks]
H3K4me1 • Peripheral blood mononuclear cell NGRMPTNJP5PZCU • ROADMAP25693563 ChIP-seq Peripheral blood mononuclear cell Histone Show metadata Download track Track metadata identifier NGRMPTNJP5PZCU data_source ROADMAP Download track Download number_of_intervals 70,366 bp_covered 27,645,763 output_type peaks genome_build hg38 cell_type Peripheral blood mononuclear cell biosample_type Primary cell biosample_term_id CL:2000001 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed narrowPeak-lifted file_size 2,073,388 downloaded_date 08/15/2018 release_date 11/30/2014 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/UCSF-UBC.Peripheral_Blood_Mononuclear_Primary_Cells.H3K4me1.TC012.HS2745.narrowPeak.lifted.bed.gz processed_file_md5 b8e70779eea4a231e0a79cffb5c05a8b wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/UCSF-UBC.Peripheral_Blood_Mononuclear_Primary_Cells.H3K4me1.TC012.HS2745.narrowPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/UCSF-UBC.Peripheral_Blood_Mononuclear_Primary_Cells.H3K4me1.TC012.HS2745.narrowPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/narrowPeak/UCSF-UBC.Peripheral_Blood_Mononuclear_Primary_Cells.H3K4me1.TC012.HS2745.narrowPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/narrowpeak/UCSF-UBC.Peripheral_Blood_Mononuclear_Primary_Cells.H3K4me1.TC012.HS2745.narrowPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/narrowpeak/ raw_file_md5 1f99f62797f40e60103aa41b000b10a9 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=2015;Original_cell_type=Peripheral Blood Mononuclear Primary Cells;Donor=TC012.HS2745;schema=BED3+10;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=yes system_category Cardiovascular life_stage Unknown track_name ROADMAP Peripheral blood mononuclear cell ChIP-seq H3K4me1-histone-mark peaks (narrowPeak-lifted) [Histone ChIP-seq peaks]
H3K4me1 • Germinal matrix NGRMPTRBFOL7ZO • ROADMAP25693563 ChIP-seq Germinal matrix Histone Show metadata Download track Track metadata identifier NGRMPTRBFOL7ZO data_source ROADMAP Download track Download number_of_intervals 98,221 bp_covered 29,957,079 output_type peaks genome_build hg38 cell_type Germinal matrix biosample_type Primary tissue biosample_term_id Not available tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed narrowPeak-lifted file_size 2,546,103 downloaded_date 08/15/2018 release_date 11/30/2014 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/UCSF-UBC.Brain_Germinal_Matrix.H3K4me1.HuFGM01.narrowPeak.lifted.bed.gz processed_file_md5 88bfb458b27286ae7ba30563b18642e7 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/UCSF-UBC.Brain_Germinal_Matrix.H3K4me1.HuFGM01.narrowPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/UCSF-UBC.Brain_Germinal_Matrix.H3K4me1.HuFGM01.narrowPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/narrowPeak/UCSF-UBC.Brain_Germinal_Matrix.H3K4me1.HuFGM01.narrowPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/narrowpeak/UCSF-UBC.Brain_Germinal_Matrix.H3K4me1.HuFGM01.narrowPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/narrowpeak/ raw_file_md5 6ee13099a3fa1552bda5305e7e21065d data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=2015;Original_cell_type=Brain Germinal Matrix;Donor=HuFGM01;schema=BED3+10;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=NTR:0001407;is_hg38_lifted=yes system_category Nervous life_stage Unknown track_name ROADMAP Germinal matrix ChIP-seq H3K4me1-histone-mark peaks (narrowPeak-lifted) [Histone ChIP-seq peaks]
H3K4me1 • Sigmoid colon NGRMPTSQ6PTXLA • ROADMAP25693563 ChIP-seq Sigmoid colon Histone Show metadata Download track Track metadata identifier NGRMPTSQ6PTXLA data_source ROADMAP Download track Download number_of_intervals 475,781 bp_covered 612,860,299 output_type peaks genome_build hg38 cell_type Sigmoid colon biosample_type Primary tissue biosample_term_id UBERON:0001159 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K4me1 assay ChIP-seq file_format bed broadPeak-lifted file_size 15,741,603 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/27/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/UCSD.Sigmoid_Colon.H3K4me1.STL001.broadPeak.lifted.bed.gz processed_file_md5 c50aa991ea2f5516f0fe1ed5ed091cb7 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/UCSD.Sigmoid_Colon.H3K4me1.STL001.broadPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/UCSD.Sigmoid_Colon.H3K4me1.STL001.broadPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/3/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/broadPeak/UCSD.Sigmoid_Colon.H3K4me1.STL001.broadPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/broadpeak/UCSD.Sigmoid_Colon.H3K4me1.STL001.broadPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/broadpeak/ raw_file_md5 33f5d748a49927d6f5e585fc81340ca0 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks track_description version=2015;Original_cell_type=Sigmoid Colon;Donor=STL001;schema=BED3+9;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ROADMAP.html;original_biosample_term_id=UBERON:0001159;is_hg38_lifted=yes system_category Digestive life_stage Unknown track_name ROADMAP Sigmoid colon ChIP-seq H3K4me1-histone-mark peaks (broadPeak-lifted) [Histone ChIP-seq peaks]