H3K4me2 • BLaER1 NGENC3YJ6CCW6M • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENC3YJ6CCW6M data_source ENCODE Download track Download number_of_intervals 95,644 bp_covered 193,043,456 output_type peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR311RXD biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed bed3+1 score file_size 762,114 downloaded_date 06/12/2022 release_date 01/27/2022 date_added_to_filer 11/08/2022 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ENCFF391MBC.bed.gz processed_file_md5 b9db8a1de47a60a33a0b0f1d52933c24 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ENCFF391MBC.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ENCFF391MBC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF391MBC/@@download/ENCFF391MBC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF391MBC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1a5ddfb2309a5c68b0843bd8d64ef9dc data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 72 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE256929;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=H072H3K4me2_zerone_merged.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED3+1;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 1, 2) Histone ChIP-seq H3K4me2 peaks (bed3+1 score) [Experiment: ENCSR311RXD] [Histone ChIP-seq peaks]
H3K4me2 • HepG2 NGENC42URSPBAY • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq HepG2 Histone Show metadata Download track Track metadata identifier NGENC42URSPBAY data_source ENCODE Download track Download number_of_intervals 88,389 bp_covered 102,589,995 output_type pseudoreplicated peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000AMC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,458,428 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF787AVI.bed.gz processed_file_md5 397bdb0b4a1ac6ea7a36084d6695814f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF787AVI.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF787AVI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF787AVI/@@download/ENCFF787AVI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF787AVI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b82ff0f81d77d2f0db710d89785f0c58 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=child 15 years;Reference=PMID:32737473;External_resources=GEO:GSM733693,UCSC-ENCODE-hg19:wgEncodeEH000082;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10,2017-02-06;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=HepG2 cell,Hep-G2;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) Histone ChIP-seq H3K4me2 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AMC] [Life stage: Child] [Histone ChIP-seq peaks]
H3K4me2 • MCF-7 NGENC44Y3PZF5P • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq MCF-7 Histone Show metadata Download track Track metadata identifier NGENC44Y3PZF5P data_source ENCODE Download track Download number_of_intervals 72,802 bp_covered 98,223,526 output_type pseudoreplicated peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR875KOJ biological_replicate 2 technical_replicate 2_1, 2_2, 2_3 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,039,887 downloaded_date 06/12/2022 release_date 11/02/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF449SIA.bed.gz processed_file_md5 66c3482474f7a5aaee1194b3c7652105 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF449SIA.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF449SIA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF449SIA/@@download/ENCFF449SIA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF449SIA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 896b1b8fb6c6c038930454d9d442c883 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 69 years;Reference=PMID:32737473;External_resources=GEO:GSE96439;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11,2015-08-03;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,integumental system;ENCODE_biosample_term_synonyms=MCF7,MCF-7 cell,MCF7 cell;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 2) Histone ChIP-seq H3K4me2 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR875KOJ] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me2 • BLaER1 NGENC4CN3CI7OQ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENC4CN3CI7OQ data_source ENCODE Download track Download number_of_intervals 91,266 bp_covered 182,414,934 output_type peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR649DTM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed bed3+1 score file_size 726,004 downloaded_date 06/12/2022 release_date 01/28/2022 date_added_to_filer 11/08/2022 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ENCFF250RIL.bed.gz processed_file_md5 85d9d550d903b8365d69de5d6da7186d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ENCFF250RIL.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ENCFF250RIL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF250RIL/@@download/ENCFF250RIL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF250RIL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1aa9354b8f1b34caa485e14a8f713b4a data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 12 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE258535;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=H012H3K4me2_zerone_merged.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED3+1;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 1, 2) Histone ChIP-seq H3K4me2 peaks (bed3+1 score) [Experiment: ENCSR649DTM] [Histone ChIP-seq peaks]
H3K4me2 • BLaER1 NGENC4CPGJGNS7 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENC4CPGJGNS7 data_source ENCODE Download track Download number_of_intervals 181,725 bp_covered 234,702,904 output_type peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR911ONC biological_replicate 2 technical_replicate 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 4,566,720 downloaded_date 06/12/2022 release_date 01/27/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF101QHY.bed.gz processed_file_md5 5153b5f281c11390a2844e59077793fe wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF101QHY.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF101QHY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF101QHY/@@download/ENCFF101QHY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF101QHY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 aea1e6c300a833026865cf696eb6eb6d data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 48 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE258150;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=H048H3K4me2X2_peaks.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 2) Histone ChIP-seq H3K4me2 peaks (narrowPeak) [Experiment: ENCSR911ONC] [Histone ChIP-seq peaks]
H3K4me2 • Osteoblast NGENC4HFAU4GCZ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Osteoblast Histone Show metadata Download track Track metadata identifier NGENC4HFAU4GCZ data_source ENCODE Download track Download number_of_intervals 95,520 bp_covered 102,143,652 output_type pseudoreplicated peaks genome_build hg38 cell_type Osteoblast biosample_type Primary cell biosample_term_id CL:0000062 tissue_category Bone encode_experiment_id ENCSR000APK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,662,015 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF534ZQY.bed.gz processed_file_md5 be27be4ac94591a18b205ba1ff1c0206 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF534ZQY.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF534ZQY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF534ZQY/@@download/ENCFF534ZQY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF534ZQY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1e23ac4fa3124c8542c16bca861eadb6 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens osteoblast;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM733779,UCSC-ENCODE-hg19:wgEncodeEH001046;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=osteoblast;ENCODE_cell_slims=connective tissue cell;ENCODE_system_slims=skeletal system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000062;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Skeletal life_stage Unknown track_name ENCODE Osteoblast (repl. 1, 2) Histone ChIP-seq H3K4me2 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000APK] [Histone ChIP-seq peaks]
H3K4me2 • Fibroblast NGENC4I342MLZ4 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Fibroblast Histone Show metadata Download track Track metadata identifier NGENC4I342MLZ4 data_source ENCODE Download track Download number_of_intervals 77,287 bp_covered 80,127,403 output_type pseudoreplicated peaks genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id ENCSR000APQ biological_replicate 2 technical_replicate 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,136,635 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF784DLI.bed.gz processed_file_md5 cfa1e15796f5ae997a568b2d789ee2b8 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF784DLI.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF784DLI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF784DLI/@@download/ENCFF784DLI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF784DLI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b54b5fef5cd93e24031b99e3d2e09135 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens fibroblast of dermis;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001052,GEO:GSM733753;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=fibroblast of dermis;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002551;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Unknown track_name ENCODE Fibroblast (repl. 2) Histone ChIP-seq H3K4me2 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000APQ] [Histone ChIP-seq peaks]
H3K4me2 • A549 NGENC4I3YH4UEP • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq A549 Histone Show metadata Download track Track metadata identifier NGENC4I3YH4UEP data_source ENCODE Download track Download number_of_intervals 77,630 bp_covered 103,252,043 output_type pseudoreplicated peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR410BCN biological_replicate 3 technical_replicate 3_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,219,178 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF036WDI.bed.gz processed_file_md5 d68ae64b75a5762b507d07a87b801ab0 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF036WDI.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF036WDI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF036WDI/@@download/ENCFF036WDI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF036WDI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ace81b7f5a26a12ec44a10086465c37c data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens A549;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91258;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=rep3-pr1_vs_rep3-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 3) Histone ChIP-seq H3K4me2 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR410BCN] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me2 • CD14+ monocyte NGENC4OSRZV2JT • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq CD14+ monocyte Histone Show metadata Download track Track metadata identifier NGENC4OSRZV2JT data_source ENCODE Download track Download number_of_intervals 46,170 bp_covered 51,027,763 output_type pseudoreplicated peaks genome_build hg38 cell_type CD14+ monocyte biosample_type Primary cell biosample_term_id CL:0001054 tissue_category Blood encode_experiment_id ENCSR000ATE biological_replicate 2 technical_replicate 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,162,092 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF776DIO.bed.gz processed_file_md5 ffb031294cd74c5cc5c5c2f4a1023b66 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF776DIO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF776DIO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF776DIO/@@download/ENCFF776DIO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF776DIO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b140b159be2ae0ddbadd79021e73b3d1 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens CD14-positive monocyte female;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM1003516,UCSC-ENCODE-hg19:wgEncodeEH003088;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-08-06;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=CD14-positive monocyte;ENCODE_cell_slims=leukocyte,myeloid cell,monocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0001054;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE CD14+ monocyte (repl. 2) Histone ChIP-seq H3K4me2 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ATE] [Histone ChIP-seq peaks]
H3K4me2 • Myotube NGENC4RCZGULAG • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Myotube Histone Show metadata Download track Track metadata identifier NGENC4RCZGULAG data_source ENCODE Download track Download number_of_intervals 77,461 bp_covered 76,729,458 output_type pseudoreplicated peaks genome_build hg38 cell_type Myotube biosample_type In vitro differentiated cells biosample_term_id CL:0002372 tissue_category Skeletal Muscle encode_experiment_id ENCSR000ANY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,104,196 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF408EUT.bed.gz processed_file_md5 9b2dbe2ba129ee81d727e9917a48019b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF408EUT.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF408EUT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF408EUT/@@download/ENCFF408EUT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF408EUT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 244a1ca7ae231799ef6c4de572e6915f data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens myotube originated from skeletal muscle myoblast;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 22 years;Reference=PMID:32728046;External_resources=GEO:GSM733700,UCSC-ENCODE-hg19:wgEncodeEH001006;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=myotube;ENCODE_cell_slims=NR;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=myotubule,single cell sarcomere;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002372;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Muscular life_stage Adult track_name ENCODE Myotube (repl. 1, 2) Histone ChIP-seq H3K4me2 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ANY] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me2 • CD14+ monocyte NGENC4XA4SJ6RU • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq CD14+ monocyte Histone Show metadata Download track Track metadata identifier NGENC4XA4SJ6RU data_source ENCODE Download track Download number_of_intervals 45,814 bp_covered 79,543,469 output_type replicated peaks genome_build hg38 cell_type CD14+ monocyte biosample_type Primary cell biosample_term_id CL:0001054 tissue_category Blood encode_experiment_id ENCSR000ATE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,355,425 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF874HPP.bed.gz processed_file_md5 bef5f97f8d82bb7da950628ea67a9d2a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF874HPP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF874HPP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF874HPP/@@download/ENCFF874HPP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF874HPP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 487dcc77f678dfd38a5b89491dd60a36 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens CD14-positive monocyte female;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM1003516,UCSC-ENCODE-hg19:wgEncodeEH003088;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-08-06;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=CD14-positive monocyte;ENCODE_cell_slims=leukocyte,myeloid cell,monocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0001054;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE CD14+ monocyte (repl. 1, 2) Histone ChIP-seq H3K4me2 replicated peaks (narrowPeak) [Experiment: ENCSR000ATE] [Histone ChIP-seq peaks]
H3K4me2 • A549 NGENC4ZIIKYDHY • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq A549 Histone Show metadata Download track Track metadata identifier NGENC4ZIIKYDHY data_source ENCODE Download track Download number_of_intervals 91,901 bp_covered 115,211,496 output_type pseudoreplicated peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000AVI biological_replicate 1, 2 technical_replicate 1_1, 2_2 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,671,743 downloaded_date 07/10/2025 release_date 11/01/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF504KKD.bed.gz processed_file_md5 0d1e638460279980720a7ccf2139a834 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF504KKD.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF504KKD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF504KKD/@@download/ENCFF504KKD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF504KKD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2676f8714c5289094bbbdd73777ad964 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 58 years;Reference=PMID:32737473;External_resources=GEO:GSM1003496,UCSC-ENCODE-hg19:wgEncodeEH003144;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-08-06;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1, 2) Histone ChIP-seq H3K4me2 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AVI] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me2 • OCI-LY3 NGENC5GZULA5YN • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq OCI-LY3 Histone Show metadata Download track Track metadata identifier NGENC5GZULA5YN data_source ENCODE Download track Download number_of_intervals 102,421 bp_covered 108,270,699 output_type pseudoreplicated peaks genome_build hg38 cell_type OCI-LY3 biosample_type Cell line biosample_term_id EFO:0006710 tissue_category Blood encode_experiment_id ENCSR701ZDB biological_replicate 1 technical_replicate 1_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,919,908 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF883MGV.bed.gz processed_file_md5 e8f9c19588b256bebd15f0bc6a9d2956 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF883MGV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF883MGV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF883MGV/@@download/ENCFF883MGV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF883MGV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 83652802c50449c34be5097563b6974b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens OCI-LY3;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 52 years;Reference=PMID:32728046;External_resources=GEO:GSE96323;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=OCI-LY3;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=Oci-Ly-3 cell,Oci-Ly-3;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0006710;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE OCI-LY3 (repl. 1) Histone ChIP-seq H3K4me2 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR701ZDB] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me2 • Skeletal muscle satellite cell NGENC5JOPYPNDL • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Skeletal muscle satellite cell Histone Show metadata Download track Track metadata identifier NGENC5JOPYPNDL data_source ENCODE Download track Download number_of_intervals 88,439 bp_covered 87,310,927 output_type pseudoreplicated peaks genome_build hg38 cell_type Skeletal muscle satellite cell biosample_type Primary cell biosample_term_id CL:0000594 tissue_category Skeletal Muscle encode_experiment_id ENCSR002EZN biological_replicate 2 technical_replicate 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,508,735 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF218UJQ.bed.gz processed_file_md5 744f17b509419be999367555dff27e1c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF218UJQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF218UJQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF218UJQ/@@download/ENCFF218UJQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF218UJQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 786d3b7d2df493d60d56d50c951485b8 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens skeletal muscle satellite cell female adult originated from mesodermal cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM621750,GEO:GSM621742,GEO:GSM621758;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=false;ENCODE_biosample_term_name=skeletal muscle satellite cell;ENCODE_cell_slims=NR;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000594;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Muscular life_stage Adult track_name ENCODE Skeletal muscle satellite cell (repl. 2) Histone ChIP-seq H3K4me2 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR002EZN] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me2 • SK-N-SH NGENC5KJZLLBRX • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq SK-N-SH Histone Show metadata Download track Track metadata identifier NGENC5KJZLLBRX data_source ENCODE Download track Download number_of_intervals 50,250 bp_covered 61,075,816 output_type pseudoreplicated peaks genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR791INM biological_replicate 2 technical_replicate 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,359,150 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF706WNG.bed.gz processed_file_md5 5ccb69d5d7b645ddb86e350e5c139545 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF706WNG.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF706WNG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF706WNG/@@download/ENCFF706WNG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF706WNG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3694860cdf8eae14ee422999abfc776f data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens SK-N-SH;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=child 4 years;Reference=PMID:32728046;External_resources=GEO:GSE96380;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-01-12,2015-08-03;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=SKNSH;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Child track_name ENCODE SK-N-SH (repl. 2) Histone ChIP-seq H3K4me2 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR791INM] [Life stage: Child] [Histone ChIP-seq peaks]
H3K4me2 • BLaER1 NGENC5OBG3JRI2 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENC5OBG3JRI2 data_source ENCODE Download track Download number_of_intervals 121,695 bp_covered 187,562,923 output_type pseudoreplicated peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR477ATR biological_replicate 2 technical_replicate 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,407,945 downloaded_date 05/15/2024 release_date 02/23/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF298GXU.bed.gz processed_file_md5 815b6dfa0b3813a20d01fad8c32466d0 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF298GXU.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF298GXU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF298GXU/@@download/ENCFF298GXU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF298GXU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 89fa36800a51b73b72cc851e460583fa data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 24 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE258897;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 2) Histone ChIP-seq H3K4me2 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR477ATR] [Histone ChIP-seq peaks]
H3K4me2 • Mesenchymal stem cell NGENC5QMOTK2K4 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mesenchymal stem cell Histone Show metadata Download track Track metadata identifier NGENC5QMOTK2K4 data_source ENCODE Download track Download number_of_intervals 61,598 bp_covered 37,011,723 output_type pseudoreplicated peaks genome_build hg38 cell_type Mesenchymal stem cell biosample_type Stem cell biosample_term_id CL:0000134 tissue_category Connective Tissue encode_experiment_id ENCSR786GJM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,579,060 downloaded_date 06/12/2022 release_date 11/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF912LDI.bed.gz processed_file_md5 d1f182e5312652b1c04a21c32404b434 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF912LDI.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF912LDI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF912LDI/@@download/ENCFF912LDI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF912LDI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 cb4fb34370dc5c69b8ad7458853a0de7 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens mesenchymal stem cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM818042,GEO:GSM818041;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=mesenchymal stem cell;ENCODE_cell_slims=stem cell,connective tissue cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000134;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Skeletal life_stage Embryonic track_name ENCODE Mesenchymal stem cell (repl. 1, 2) Histone ChIP-seq H3K4me2 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR786GJM] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me2 • H9 NGENC5RP6VV7IZ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H9 Histone Show metadata Download track Track metadata identifier NGENC5RP6VV7IZ data_source ENCODE Download track Download number_of_intervals 37,566 bp_covered 57,152,500 output_type pseudoreplicated peaks genome_build hg38 cell_type H9 biosample_type Stem cell biosample_term_id EFO:0003045 tissue_category Embryo encode_experiment_id ENCSR730POX biological_replicate 1 technical_replicate 1_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,083,316 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF228LEM.bed.gz processed_file_md5 d3b50bd877eecb2d19dee7b1c4483975 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF228LEM.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF228LEM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF228LEM/@@download/ENCFF228LEM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF228LEM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2b65a56863d7a662605055041c0be4b5 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H9;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSM605314,GEO:GSM616127;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H9;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003045;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H9 (repl. 1) Histone ChIP-seq H3K4me2 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR730POX] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me2 • BLaER1 NGENC5WSH5BKJE • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENC5WSH5BKJE data_source ENCODE Download track Download number_of_intervals 165,162 bp_covered 225,861,350 output_type peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR693KAX biological_replicate 1 technical_replicate 1_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 4,074,256 downloaded_date 06/12/2022 release_date 01/27/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF805HWD.bed.gz processed_file_md5 89d73e1a3d36bd90a482f7f8366b7db9 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF805HWD.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF805HWD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF805HWD/@@download/ENCFF805HWD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF805HWD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 325b86a44250355a74de98489343f1e3 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE257732;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=H000H3K4me2X1_peaks.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 1) Histone ChIP-seq H3K4me2 peaks (narrowPeak) [Experiment: ENCSR693KAX] [Histone ChIP-seq peaks]
H3K4me2 • Mesenchymal stem cell NGENC5XUSAFFTB • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mesenchymal stem cell Histone Show metadata Download track Track metadata identifier NGENC5XUSAFFTB data_source ENCODE Download track Download number_of_intervals 54,828 bp_covered 35,427,462 output_type replicated peaks genome_build hg38 cell_type Mesenchymal stem cell biosample_type Stem cell biosample_term_id CL:0000134 tissue_category Connective Tissue encode_experiment_id ENCSR786GJM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,422,969 downloaded_date 06/12/2022 release_date 11/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF234GWU.bed.gz processed_file_md5 6072f04e270f305cfb74ab2ad5c39396 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF234GWU.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF234GWU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF234GWU/@@download/ENCFF234GWU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF234GWU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 bb27c88772a0c0c54ae7ed81293d9908 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens mesenchymal stem cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM818042,GEO:GSM818041;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=mesenchymal stem cell;ENCODE_cell_slims=stem cell,connective tissue cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000134;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Skeletal life_stage Embryonic track_name ENCODE Mesenchymal stem cell (repl. 1, 2) Histone ChIP-seq H3K4me2 replicated peaks (narrowPeak) [Experiment: ENCSR786GJM] [Life stage: Embryonic] [Histone ChIP-seq peaks]