FT190 NGADBNUR2MLDVD • ATACdb v1.03 ATAC-seq FT190 Accessible chromatin Show metadata identifier NGADBNUR2MLDVD data_source ATACdb_v1.03 Download track Download number_of_intervals 27,190 bp_covered 16,405,570 output_type accessible chromatin region genome_build hg38 cell_type FT190 biosample_type Cell line biosample_term_id Not available tissue_category Female Reproductive encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 896,338 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1364_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 04fea28a8dbd40bf9cb9c4b4b462ab30 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1364_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1364_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1364.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1364.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 9c4f899182ea42f6c40a0c93cce3a59e data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1364;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=FT190;Cancer_Type=Ovarion cancer;Region_Number=27236;Length=16431.814 kb;GEO_SRA=GSM3462381;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.o system_category Reproductive life_stage Unknown track_name ATACdb_v1.03 FT190 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
FL3 NGADBNV62VBLTC • ATACdb v1.03 ATAC-seq FL3 TFBS Show metadata identifier NGADBNV62VBLTC data_source ATACdb_v1.03 Download track Download number_of_intervals 225,792 bp_covered 3,089,294 output_type transcription factor binding sites genome_build hg38 cell_type FL3 biosample_type Cell line biosample_term_id Not available tissue_category Skin encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 8,232,881 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1155_hg38_motif_binding_sites.bed.gz processed_file_md5 ab69ad132bd869340641a44955782690 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1155_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1155_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1155;Biosample_Type=Cell Line;Tissue_Type=Fibroblast;Biosample_Name=FL3;Cancer_Type=Other;Region_Number=80194;Length=45036.571 kb;GEO_SRA=SRR3066456;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system_category Integumentary life_stage Unknown track_name ATACdb_v1.03 FL3 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
hESC NGADBNVD3RFDBL • ATACdb v1.03 ATAC-seq hESC Accessible chromatin Show metadata identifier NGADBNVD3RFDBL data_source ATACdb_v1.03 Download track Download number_of_intervals 67,592 bp_covered 35,273,621 output_type accessible chromatin region genome_build hg38 cell_type hESC biosample_type Cell line biosample_term_id CL:0002322 tissue_category Stem Cell encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 2,221,005 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1404_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 b193741851c6c8f5d3ce921f72d2069b wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1404_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1404_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1404.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1404.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 04d2cb2551ca25e89865c6234728abf4 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1404;Biosample_Type=Cell Line;Tissue_Type=Embryo;Biosample_Name=HESC;Cancer_Type=Normal;Region_Number=67706;Length=35358.785 kb;GEO_SRA=SRR8098482;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system_category Stem Cell life_stage Embryonic track_name ATACdb_v1.03 hESC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic] [Accessible chromatin]
Inferior temporal lobe NGADBNVPGCW76O • ATACdb v1.03 ATAC-seq Inferior temporal lobe Accessible chromatin Show metadata identifier NGADBNVPGCW76O data_source ATACdb_v1.03 Download track Download number_of_intervals 20,755 bp_covered 6,600,298 output_type accessible chromatin region genome_build hg38 cell_type Inferior temporal lobe biosample_type Not applicable biosample_term_id UBERON:0006091 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 657,218 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0468_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 1a9ac7c3c245ccb3e0d5de80d1cbb5cc wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0468_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0468_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0468.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0468.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 4e9a7d707fffb930eae5627d4f069400 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0468;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=inferior temporal cortex;Cancer_Type=Other;Region_Number=20763;Length=6601.048 kb;GEO_SRA=SRR5367735;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwang system_category Nervous life_stage Unknown track_name ATACdb_v1.03 Inferior temporal lobe ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Putamen NGADBNVXFP4KSY • ATACdb v1.03 ATAC-seq Putamen TFBS Show metadata identifier NGADBNVXFP4KSY data_source ATACdb_v1.03 Download track Download number_of_intervals 110,739 bp_covered 1,515,896 output_type transcription factor binding sites genome_build hg38 cell_type Putamen biosample_type Not applicable biosample_term_id UBERON:0001874 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 4,218,410 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0484_hg38_motif_binding_sites.bed.gz processed_file_md5 67406a8362fe816a5d4b853ec4aa0ea1 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0484_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0484_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0484;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=putamen;Cancer_Type=Other;Region_Number=71933;Length=24854.505 kb;GEO_SRA=SRR5367751;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FIL system_category Nervous life_stage Unknown track_name ATACdb_v1.03 Putamen ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Hippocampus NGADBNWM3ZJH5B • ATACdb v1.03 ATAC-seq Hippocampus Accessible chromatin Show metadata identifier NGADBNWM3ZJH5B data_source ATACdb_v1.03 Download track Download number_of_intervals 23,038 bp_covered 9,015,998 output_type accessible chromatin region genome_build hg38 cell_type Hippocampus biosample_type Not applicable biosample_term_id NCIT:C12444 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 732,824 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0466_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 174261e7c70dfdd37ee2931fdf0aa6e3 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0466_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0466_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0466.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0466.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 049bcb1e933f5f931be9cf1aed9a0769 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0466;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=hippocampus;Cancer_Type=Other;Region_Number=23053;Length=9020.971 kb;GEO_SRA=SRR5367733;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system_category Nervous life_stage Unknown track_name ATACdb_v1.03 Hippocampus ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Fibroblast NGADBNXBJP6SK2 • ATACdb v1.03 ATAC-seq Fibroblast Accessible chromatin Show metadata identifier NGADBNXBJP6SK2 data_source ATACdb_v1.03 Download track Download number_of_intervals 9,527 bp_covered 3,443,718 output_type accessible chromatin region genome_build hg38 cell_type Fibroblast biosample_type Stem cell biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 289,669 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0965_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 a4604e2cbbc377928a7bf4c400ca0de7 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0965_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0965_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0965.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0965.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 ad3b17325cee3cce3daf7f1db60fc7c7 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0965;Biosample_Type=Stem Cell;Tissue_Type=Fibroblast;Biosample_Name=Fibroblast;Cancer_Type=Other;Region_Number=9541;Length=3450.807 kb;GEO_SRA=SRR2097504;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.or system_category Integumentary life_stage Unknown track_name ATACdb_v1.03 Fibroblast ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Induced pluripotent stem cell NGADBNXG3B2VUB • ATACdb v1.03 ATAC-seq Induced pluripotent stem cell TFBS Show metadata identifier NGADBNXG3B2VUB data_source ATACdb_v1.03 Download track Download number_of_intervals 174,862 bp_covered 2,375,902 output_type transcription factor binding sites genome_build hg38 cell_type Induced pluripotent stem cell biosample_type Stem cell biosample_term_id EFO:0004905 tissue_category iPSC encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 6,254,594 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0779_hg38_motif_binding_sites.bed.gz processed_file_md5 50890db097ca1c3dff280c40523db19f wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0779_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0779_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0779;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA19225;Cancer_Type=Other;Region_Number=63829;Length=30462.445 kb;GEO_SRA=SRR6412412;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/ system_category Stem Cell life_stage Unknown track_name ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
K562 NGADBNXVTB745B • ATACdb v1.03 ATAC-seq K562 TFBS Show metadata identifier NGADBNXVTB745B data_source ATACdb_v1.03 Download track Download number_of_intervals 14,788 bp_covered 213,737 output_type transcription factor binding sites genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 462,735 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0935_hg38_motif_binding_sites.bed.gz processed_file_md5 22aa0eb4ffd75b199b446a5f8f32cd5a wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0935_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0935_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0935;Biosample_Type=Cell Line;Tissue_Type=Bone marrow;Biosample_Name=K562;Cancer_Type=Leukemia;Region_Number=5921;Length=1420.975 kb;GEO_SRA=SRR5809243;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/ system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 K562 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
K562 NGADBNYA5WWZ4M • ATACdb v1.03 ATAC-seq K562 TFBS Show metadata identifier NGADBNYA5WWZ4M data_source ATACdb_v1.03 Download track Download number_of_intervals 3,668 bp_covered 50,731 output_type transcription factor binding sites genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 110,311 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0937_hg38_motif_binding_sites.bed.gz processed_file_md5 5da6273eb7c6cded9fe19397d5538d22 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0937_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0937_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0937;Biosample_Type=Cell Line;Tissue_Type=Bone marrow;Biosample_Name=K562;Cancer_Type=Leukemia;Region_Number=1187;Length=289.349 kb;GEO_SRA=SRR5809245;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/G system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 K562 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
CD4+ NGADBNYL2FVLNV • ATACdb v1.03 ATAC-seq CD4+ TFBS Show metadata identifier NGADBNYL2FVLNV data_source ATACdb_v1.03 Download track Download number_of_intervals 111,180 bp_covered 1,483,694 output_type transcription factor binding sites genome_build hg38 cell_type CD4+ biosample_type Primary cell biosample_term_id CL:0000492 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 3,495,569 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1250_hg38_motif_binding_sites.bed.gz processed_file_md5 cd2fe7cf99cddf47e79c98aad54a88c3 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1250_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1250_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1250;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Normal;Region_Number=20986;Length=11391.228 kb;GEO_SRA=SRR1556329;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab. system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 CD4+ ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
HCASMC NGADBNYZO57STI • ATACdb v1.03 ATAC-seq HCASMC TFBS Show metadata identifier NGADBNYZO57STI data_source ATACdb_v1.03 Download track Download number_of_intervals 351,998 bp_covered 4,840,692 output_type transcription factor binding sites genome_build hg38 cell_type HCASMC biosample_type Tissue biosample_term_id CL:0002592 tissue_category Blood Vessel encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 13,413,140 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1163_hg38_motif_binding_sites.bed.gz processed_file_md5 15041cf1aaecc52aac0286e87ae9da4f wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1163_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1163_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1163;Biosample_Type=Tissue;Tissue_Type=Artery;Biosample_Name=HCASMC;Cancer_Type=Normal;Region_Number=158952;Length=77255.984 kb;GEO_SRA=SRR2378590;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 HCASMC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
HEK293 NGADBNZ4OSX7J4 • ATACdb v1.03 ATAC-seq HEK293 TFBS Show metadata identifier NGADBNZ4OSX7J4 data_source ATACdb_v1.03 Download track Download number_of_intervals 154,499 bp_covered 2,093,456 output_type transcription factor binding sites genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 5,237,455 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0100_hg38_motif_binding_sites.bed.gz processed_file_md5 9dbb84e2b4375456060feb54c2c9ce94 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0100_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0100_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0100;Biosample_Type=Cell Line;Tissue_Type=Kidney;Biosample_Name=HEK293;Cancer_Type=Normal;Region_Number=40335;Length=20836.437 kb;GEO_SRA=SRR6418081;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system_category Renal life_stage Unknown track_name ATACdb_v1.03 HEK293 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Naive Tregs NGADBNZ5FWYKSF • ATACdb v1.03 ATAC-seq Naive Tregs TFBS Show metadata identifier NGADBNZ5FWYKSF data_source ATACdb_v1.03 Download track Download number_of_intervals 120,112 bp_covered 1,600,337 output_type transcription factor binding sites genome_build hg38 cell_type Naive Tregs biosample_type Not applicable biosample_term_id CL:0002677 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 3,596,452 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0353_hg38_motif_binding_sites.bed.gz processed_file_md5 345f744ba0f6e00dd864f2519c1f5fd6 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0353_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0353_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0353;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Naive_Tregs;Cancer_Type=Normal;Region_Number=17384;Length=12385.625 kb;GEO_SRA=SRR7650909;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Naive Tregs ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Fibroblast NGADBNZAUDHB32 • ATACdb v1.03 ATAC-seq Fibroblast TFBS Show metadata identifier NGADBNZAUDHB32 data_source ATACdb_v1.03 Download track Download number_of_intervals 229,034 bp_covered 3,170,336 output_type transcription factor binding sites genome_build hg38 cell_type Fibroblast biosample_type Cell line biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 8,744,906 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0150_hg38_motif_binding_sites.bed.gz processed_file_md5 24275ba4237d122e52ec870d90601147 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0150_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0150_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0150;Biosample_Type=Cell Line;Tissue_Type=Skin;Biosample_Name=Fibroblast;Cancer_Type=CAID Syndrome;Region_Number=89613;Length=50934.812 kb;GEO_SRA=SRR6726101;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwangla system_category Integumentary life_stage Unknown track_name ATACdb_v1.03 Fibroblast ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
CD4+ NGADBNZAV4QV4C • ATACdb v1.03 ATAC-seq CD4+ Accessible chromatin Show metadata identifier NGADBNZAV4QV4C data_source ATACdb_v1.03 Download track Download number_of_intervals 4,315 bp_covered 1,465,116 output_type accessible chromatin region genome_build hg38 cell_type CD4+ biosample_type Primary cell biosample_term_id CL:0000492 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 132,560 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1258_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 b5fbdfaea5486111f4d79a80a0c5b90e wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1258_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1258_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1258.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1258.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 b564f6a4e42876f7b73225ae1a4749d5 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1258;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Normal;Region_Number=4326;Length=1465.013 kb;GEO_SRA=SRR1556337;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.or system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
hESC NGADBNZR6PLHNJ • ATACdb v1.03 ATAC-seq hESC Accessible chromatin Show metadata identifier NGADBNZR6PLHNJ data_source ATACdb_v1.03 Download track Download number_of_intervals 25,765 bp_covered 15,324,555 output_type accessible chromatin region genome_build hg38 cell_type hESC biosample_type Stem cell biosample_term_id CL:0002322 tissue_category Stem Cell encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 856,773 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0602_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 92cf02e913aa3dabe8fb77bd9981e4ba wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0602_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0602_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0602.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0602.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 825c0f702f5470708a90096a46639f15 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0602;Biosample_Type=Stem Cell;Tissue_Type=Embryo;Biosample_Name=Embryo;Cancer_Type=Normal;Region_Number=25824;Length=15326.458 kb;GEO_SRA=GSM2706226;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system_category Stem Cell life_stage Embryonic track_name ATACdb_v1.03 hESC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic] [Accessible chromatin]
Prostate NGADBNZTCYKA6Z • ATACdb v1.03 ATAC-seq Prostate Accessible chromatin Show metadata identifier NGADBNZTCYKA6Z data_source ATACdb_v1.03 Download track Download number_of_intervals 9,128 bp_covered 4,437,612 output_type accessible chromatin region genome_build hg38 cell_type Prostate biosample_type Tissue biosample_term_id UBERON:0002367 tissue_category Male Reproductive encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 299,326 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0176_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 4fa3d7d6437f0396c2eb46bf75b0080e wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0176_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0176_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0176.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0176.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 8b08686211d0f9f2771373f08c516882 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0176;Biosample_Type=Tissue;Tissue_Type=Epithelial;Biosample_Name=Prostate;Cancer_Type=Other;Region_Number=9151;Length=4437.506 kb;GEO_SRA=SRR7651667;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system_category Reproductive life_stage Unknown track_name ATACdb_v1.03 Prostate ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Memory Tregs NGADBO2JU3AQLV • ATACdb v1.03 ATAC-seq Memory Tregs Accessible chromatin Show metadata identifier NGADBO2JU3AQLV data_source ATACdb_v1.03 Download track Download number_of_intervals 35,859 bp_covered 16,895,768 output_type accessible chromatin region genome_build hg38 cell_type Memory Tregs biosample_type Not applicable biosample_term_id CL:0002678 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,189,691 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0337_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 0d9e28ea4fe73b37ff254391e4d3d6c3 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0337_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0337_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0337.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0337.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 1d8e19af6c765dec81256722af119be5 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0337;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Memory_Tregs;Cancer_Type=Normal;Region_Number=35966;Length=16948.888 kb;GEO_SRA=SRR7650869;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GA system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Memory Tregs ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Primary visual cortex NGADBO34VK7NVF • ATACdb v1.03 ATAC-seq Primary visual cortex Accessible chromatin Show metadata identifier NGADBO34VK7NVF data_source ATACdb_v1.03 Download track Download number_of_intervals 51,830 bp_covered 32,875,227 output_type accessible chromatin region genome_build hg38 cell_type Primary visual cortex biosample_type Not applicable biosample_term_id UBERON:0002436 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,669,299 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0462_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 f4c24134329358e8e6003cf3658c4bee wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0462_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0462_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0462.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0462.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 28cdfcf8104a783ad6bc0b37bfe7c5a6 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0462;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=primary visual cortex;Cancer_Type=Other;Region_Number=51847;Length=32885.33 kb;GEO_SRA=SRR5367727;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab system_category Nervous life_stage Unknown track_name ATACdb_v1.03 Primary visual cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]