H3K4me2 • Mesendoderm NGENCSPW7XNE2K • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mesendoderm Histone Show metadata Download track Track metadata identifier NGENCSPW7XNE2K data_source ENCODE Download track Download number_of_intervals 45,604 bp_covered 25,695,716 output_type pseudoreplicated peaks genome_build hg38 cell_type Mesendoderm biosample_type In vitro differentiated cells biosample_term_id BTO:0003953 tissue_category Embryo encode_experiment_id ENCSR126BGU biological_replicate 1, 2 technical_replicate 1_1, 2_3 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,050,051 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF232UNW.bed.gz processed_file_md5 1eb43bfee1644fac0f289a04688dab35 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF232UNW.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF232UNW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF232UNW/@@download/ENCFF232UNW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF232UNW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c05a5d84f5c8928a83c3bf349b70aed1 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens mesendoderm originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM752981,GEO:GSM752982;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=mesendoderm;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0000856;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Mesendoderm (repl. 1, 2) Histone ChIP-seq H3K4me2 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR126BGU] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me2 • A549 NGENCSTAOQQVB7 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq A549 Histone Show metadata Download track Track metadata identifier NGENCSTAOQQVB7 data_source ENCODE Download track Download number_of_intervals 97,680 bp_covered 134,917,418 output_type pseudoreplicated peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR215DID biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,827,974 downloaded_date 07/10/2025 release_date 11/13/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF056FRA.bed.gz processed_file_md5 204b4f2786eb0bfcf836d6d4e2fb1314 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF056FRA.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF056FRA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF056FRA/@@download/ENCFF056FRA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF056FRA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 77eaec57936ce4bed5281e889bd9d99a data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 0.5 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91219;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1, 2, 3) Histone ChIP-seq H3K4me2 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR215DID] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me2 • Trophoblast NGENCSVYNGFQOA • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Trophoblast Histone Show metadata Download track Track metadata identifier NGENCSVYNGFQOA data_source ENCODE Download track Download number_of_intervals 50,866 bp_covered 42,277,966 output_type replicated peaks genome_build hg38 cell_type Trophoblast biosample_type Primary cell biosample_term_id UBERON:0000088 tissue_category Embryo encode_experiment_id ENCSR941QJQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,445,405 downloaded_date 06/12/2022 release_date 11/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF099UKR.bed.gz processed_file_md5 0996c997213530839e36115b72153c4c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF099UKR.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF099UKR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF099UKR/@@download/ENCFF099UKR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF099UKR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2675454e7bda27f9097990cdcfba9732 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens trophoblast cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM753438,GEO:GSM753439;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=trophoblast cell;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=trophoblastic cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000351;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Trophoblast (repl. 1, 2) Histone ChIP-seq H3K4me2 replicated peaks (narrowPeak) [Experiment: ENCSR941QJQ] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me2 • BLaER1 NGENCSXVTNZ7PN • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENCSXVTNZ7PN data_source ENCODE Download track Download number_of_intervals 170,466 bp_covered 223,583,194 output_type peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR649DTM biological_replicate 2 technical_replicate 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 4,211,010 downloaded_date 06/12/2022 release_date 01/28/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF232VQE.bed.gz processed_file_md5 a2bf7e7448aee8eb9cf04c32a62a22a7 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF232VQE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF232VQE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF232VQE/@@download/ENCFF232VQE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF232VQE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 969906dd419390c7cf723df288ccb814 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 12 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE258535;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=H012H3K4me2X2_peaks.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 2) Histone ChIP-seq H3K4me2 peaks (narrowPeak) [Experiment: ENCSR649DTM] [Histone ChIP-seq peaks]
H3K4me2 • H1-hESC NGENCSZQJM7VSV • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H1-hESC Histone Show metadata Download track Track metadata identifier NGENCSZQJM7VSV data_source ENCODE Download track Download number_of_intervals 46,231 bp_covered 85,954,503 output_type replicated peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR322MEI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,348,038 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF607VHJ.bed.gz processed_file_md5 7e1571e14e4238201cbde949f00c74c0 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF607VHJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF607VHJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF607VHJ/@@download/ENCFF607VHJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF607VHJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e40faa24b38c5d9b998b6872bd346d12 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM602261,GEO:GSM602260;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1, 2) Histone ChIP-seq H3K4me2 replicated peaks (narrowPeak) [Experiment: ENCSR322MEI] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me2 • K562 NGENCT6ES43S55 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq K562 Histone Show metadata Download track Track metadata identifier NGENCT6ES43S55 data_source ENCODE Download track Download number_of_intervals 75,830 bp_covered 59,806,271 output_type pseudoreplicated peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000AKT biological_replicate 2 technical_replicate 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,923,973 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF888LES.bed.gz processed_file_md5 cc16e34f2df48868f0691d33ca89ae19 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF888LES.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF888LES.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF888LES/@@download/ENCFF888LES.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF888LES.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ddee3a3d8392e46a12e4f3b9dab0d633 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32737473;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000047,GEO:GSM733651;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) Histone ChIP-seq H3K4me2 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AKT] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me2 • MM.1S NGENCTB5JXTDI4 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq MM.1S Histone Show metadata Download track Track metadata identifier NGENCTB5JXTDI4 data_source ENCODE Download track Download number_of_intervals 55,196 bp_covered 41,605,006 output_type pseudoreplicated peaks genome_build hg38 cell_type MM.1S biosample_type Cell line biosample_term_id EFO:0005724 tissue_category Blood encode_experiment_id ENCSR086YIH biological_replicate 1 technical_replicate 1_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,363,370 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF286WHD.bed.gz processed_file_md5 c3c3a59be56046f8fc7e13067a15ea80 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF286WHD.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF286WHD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF286WHD/@@download/ENCFF286WHD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF286WHD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f90380394c0e8b4505dfaeba08594bd5 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens MM.1S;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 42 years;Reference=PMID:32728046;External_resources=GEO:GSE95911;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-06-30,2015-08-03;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MM.1S;ENCODE_cell_slims=B cell,cancer cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=MM.1 S,MM.1S cell,MM.1-S;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005724;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE MM.1S (repl. 1) Histone ChIP-seq H3K4me2 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR086YIH] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me2 • A549 NGENCTGDPF4EKS • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq A549 Histone Show metadata Download track Track metadata identifier NGENCTGDPF4EKS data_source ENCODE Download track Download number_of_intervals 87,168 bp_covered 130,584,680 output_type replicated peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR215DID biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,557,253 downloaded_date 07/10/2025 release_date 11/13/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF032NPO.bed.gz processed_file_md5 679ff491f40b1d7609deff4c98deaf7a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF032NPO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF032NPO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF032NPO/@@download/ENCFF032NPO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF032NPO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f1eb47db84e1d4d548e2d4d98846590f data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 0.5 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91219;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;Bio_rep=1, 2, 3;Tech_rep=1_1, 2_1, 3_1;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1, 2) Histone ChIP-seq H3K4me2 replicated peaks (narrowPeak) [Experiment: ENCSR215DID] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me2 • A549 NGENCTSHPLSVWG • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq A549 Histone Show metadata Download track Track metadata identifier NGENCTSHPLSVWG data_source ENCODE Download track Download number_of_intervals 92,364 bp_covered 120,836,528 output_type pseudoreplicated peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR124YCC biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,682,986 downloaded_date 07/10/2025 release_date 11/13/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF024AUV.bed.gz processed_file_md5 93158cb3e0a7ef15c6156cb4c4513508 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF024AUV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF024AUV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF024AUV/@@download/ENCFF024AUV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF024AUV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 edc57e7982ae8755762e73f63264bfb4 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 2 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91206;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1, 2, 3) Histone ChIP-seq H3K4me2 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR124YCC] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me2 • A549 NGENCU2P5AYEDI • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq A549 Histone Show metadata Download track Track metadata identifier NGENCU2P5AYEDI data_source ENCODE Download track Download number_of_intervals 83,797 bp_covered 120,444,806 output_type replicated peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR834LCU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,396,185 downloaded_date 07/10/2025 release_date 11/13/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF335TQR.bed.gz processed_file_md5 41a8ee1edc26a7879ae83874a0cc3ced wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF335TQR.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF335TQR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF335TQR/@@download/ENCFF335TQR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF335TQR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 588afcb547884799ded373d82797fc2d data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 4 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91341;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1, 2) Histone ChIP-seq H3K4me2 replicated peaks (narrowPeak) [Experiment: ENCSR834LCU] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me2 • BLaER1 NGENCUB22OB7MB • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENCUB22OB7MB data_source ENCODE Download track Download number_of_intervals 159,660 bp_covered 208,918,453 output_type peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR256YSL biological_replicate 2 technical_replicate 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 4,041,806 downloaded_date 06/12/2022 release_date 01/27/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF616WIZ.bed.gz processed_file_md5 1125d48e58a78379e9eab5fc5e1bc15c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF616WIZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF616WIZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF616WIZ/@@download/ENCFF616WIZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF616WIZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 45f64a805f3ef174efb373e21de6f03e data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 6 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE257415;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=H006H3K4me2X2_peaks.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 2) Histone ChIP-seq H3K4me2 peaks (narrowPeak) [Experiment: ENCSR256YSL] [Histone ChIP-seq peaks]
H3K4me2 • BLaER1 NGENCUB4ENI4VF • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENCUB4ENI4VF data_source ENCODE Download track Download number_of_intervals 115,326 bp_covered 212,465,322 output_type pseudoreplicated peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR911ONC biological_replicate 2 technical_replicate 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,228,797 downloaded_date 05/15/2024 release_date 03/01/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF226WZG.bed.gz processed_file_md5 b1b4d25ea448c6b92fe0bec9a5c59936 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF226WZG.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF226WZG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF226WZG/@@download/ENCFF226WZG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF226WZG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 657d67f8a061cd9281d56dc3e5135e41 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 48 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE258150;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 2) Histone ChIP-seq H3K4me2 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR911ONC] [Histone ChIP-seq peaks]
H3K4me2 • Endothelial cell NGENCUEBUUQTRG • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Endothelial cell Histone Show metadata Download track Track metadata identifier NGENCUEBUUQTRG data_source ENCODE Download track Download number_of_intervals 73,226 bp_covered 56,024,474 output_type pseudoreplicated peaks genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Umbilical Cord encode_experiment_id ENCSR000AKM biological_replicate 1 technical_replicate 1_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,849,015 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF812CIB.bed.gz processed_file_md5 2c0495405aacafb5d2d15054591bbbfa wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF812CIB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF812CIB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF812CIB/@@download/ENCFF812CIB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF812CIB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d99ccd47318eb1195befb09bae0556d7 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens endothelial cell of umbilical vein newborn;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM733683,UCSC-ENCODE-hg19:wgEncodeEH000040;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=endothelial cell of umbilical vein;ENCODE_cell_slims=endothelial cell,epithelial cell;ENCODE_system_slims=reproductive system,circulatory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002618;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Newborn track_name ENCODE Endothelial cell (repl. 1) Histone ChIP-seq H3K4me2 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AKM] [Life stage: Newborn] [Histone ChIP-seq peaks]
H3K4me2 • Myoblast NGENCUHKRBKZLK • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Myoblast Histone Show metadata Download track Track metadata identifier NGENCUHKRBKZLK data_source ENCODE Download track Download number_of_intervals 70,767 bp_covered 51,612,555 output_type pseudoreplicated peaks genome_build hg38 cell_type Myoblast biosample_type Primary cell biosample_term_id CL:0000056 tissue_category Skeletal Muscle encode_experiment_id ENCSR000ANJ biological_replicate 2 technical_replicate 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,736,160 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF504THR.bed.gz processed_file_md5 b95143183a98fab6fd8ce6db50bff9df wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF504THR.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF504THR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF504THR/@@download/ENCFF504THR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF504THR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6634c8abc9543f1c20441692671a91a8 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens skeletal muscle myoblast male adult (22 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 22 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000115,GEO:GSM733768;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=skeletal muscle myoblast;ENCODE_cell_slims=myoblast,embryonic cell;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=skeletal myoblast;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000515;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Muscular life_stage Adult track_name ENCODE Myoblast (repl. 2) Histone ChIP-seq H3K4me2 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ANJ] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me2 • A549 NGENCUIOOEEE26 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq A549 Histone Show metadata Download track Track metadata identifier NGENCUIOOEEE26 data_source ENCODE Download track Download number_of_intervals 89,575 bp_covered 131,509,305 output_type replicated peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR215DID biological_replicate 1, 3 technical_replicate 1_1, 3_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,616,996 downloaded_date 07/10/2025 release_date 11/13/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF546XDO.bed.gz processed_file_md5 7266c0d9788340635c3ad76254518c02 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF546XDO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF546XDO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF546XDO/@@download/ENCFF546XDO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF546XDO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 13c3ba1483455478e32ab95831aed7a0 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 0.5 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91219;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=rep1_vs_rep3.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;Bio_rep=1, 2, 3;Tech_rep=1_1, 2_1, 3_1;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1, 3) Histone ChIP-seq H3K4me2 replicated peaks (narrowPeak) [Experiment: ENCSR215DID] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me2 • Trophoblast NGENCUKYUTJM6O • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Trophoblast Histone Show metadata Download track Track metadata identifier NGENCUKYUTJM6O data_source ENCODE Download track Download number_of_intervals 54,685 bp_covered 43,444,778 output_type pseudoreplicated peaks genome_build hg38 cell_type Trophoblast biosample_type Primary cell biosample_term_id UBERON:0000088 tissue_category Embryo encode_experiment_id ENCSR941QJQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,539,773 downloaded_date 06/12/2022 release_date 11/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF298SAF.bed.gz processed_file_md5 e8c53655ea06688b806c5c0c6e7daf92 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF298SAF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF298SAF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF298SAF/@@download/ENCFF298SAF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF298SAF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 eccca91326daef148e5b31fb9bedf43e data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens trophoblast cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM753438,GEO:GSM753439;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=trophoblast cell;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=trophoblastic cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000351;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Trophoblast (repl. 1, 2) Histone ChIP-seq H3K4me2 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR941QJQ] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me2 • Karpas-422 NGENCUMIP2Q552 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Karpas-422 Histone Show metadata Download track Track metadata identifier NGENCUMIP2Q552 data_source ENCODE Download track Download number_of_intervals 54,231 bp_covered 89,092,073 output_type pseudoreplicated peaks genome_build hg38 cell_type Karpas-422 biosample_type Cell line biosample_term_id EFO:0005719 tissue_category Blood encode_experiment_id ENCSR870IGD biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,576,749 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF466NPG.bed.gz processed_file_md5 291ef62541b2b260815f4cc4336bb404 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF466NPG.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF466NPG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF466NPG/@@download/ENCFF466NPG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF466NPG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 eba02c907dcdefc0362c3d53e7e28b99 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens Karpas-422;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 72 years;Reference=PMID:32728046;External_resources=GEO:GSE96433;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=Karpas-422;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=Karpas 422 cell,Karpas-422;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005719;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Karpas-422 (repl. 1, 2) Histone ChIP-seq H3K4me2 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR870IGD] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me2 • A549 NGENCUOBGGBQNH • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq A549 Histone Show metadata Download track Track metadata identifier NGENCUOBGGBQNH data_source ENCODE Download track Download number_of_intervals 84,709 bp_covered 103,142,599 output_type pseudoreplicated peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR692JHM biological_replicate 3 technical_replicate 3_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,433,732 downloaded_date 07/10/2025 release_date 11/13/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF359CLQ.bed.gz processed_file_md5 205c4398989ca2cb52a9c87fd5d92997 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF359CLQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF359CLQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF359CLQ/@@download/ENCFF359CLQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF359CLQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 141bf4feebd67ecf644c30c0b50659ad data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 1 hour;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91323;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=rep3-pr1_vs_rep3-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 3) Histone ChIP-seq H3K4me2 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR692JHM] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me2 • BLaER1 NGENCUZBPEEDP4 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENCUZBPEEDP4 data_source ENCODE Download track Download number_of_intervals 198,373 bp_covered 234,980,573 output_type peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR311RXD biological_replicate 2 technical_replicate 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 4,707,867 downloaded_date 06/12/2022 release_date 01/27/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF911WIP.bed.gz processed_file_md5 99091cc735d768332b1d87c716c457bd wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF911WIP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF911WIP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF911WIP/@@download/ENCFF911WIP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF911WIP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 273814bad42e166744b45317552f281f data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 72 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE256929;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=H072H3K4me2X2_peaks.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 2) Histone ChIP-seq H3K4me2 peaks (narrowPeak) [Experiment: ENCSR311RXD] [Histone ChIP-seq peaks]
H3K4me2 • Fibroblast NGENCV3XP2IUFY • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Fibroblast Histone Show metadata Download track Track metadata identifier NGENCV3XP2IUFY data_source ENCODE Download track Download number_of_intervals 63,399 bp_covered 46,091,905 output_type replicated peaks genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Lung encode_experiment_id ENCSR000AMV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me2 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,471,687 downloaded_date 06/12/2022 release_date 08/14/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF891PGH.bed.gz processed_file_md5 2a0aa265b675eb9a79513deda3a15b8c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF891PGH.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF891PGH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF891PGH/@@download/ENCFF891PGH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF891PGH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 538e9791ae8a16f24e3f52faaaa5ef95 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM733781,UCSC-ENCODE-hg19:wgEncodeEH000101;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=fibroblast of lung;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002553;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult, Child track_name ENCODE Fibroblast (repl. 1, 2) Histone ChIP-seq H3K4me2 replicated peaks (narrowPeak) [Experiment: ENCSR000AMV] [Life stage: Adult, Child] [Histone ChIP-seq peaks]