HCT116 NGABCA32L575OE • Nasser 2021 ABC enhancer gene ABC HCT116 Chromatin interactions Show metadata identifier NGABCA32L575OE data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 65,424 bp_covered 33,619,250 output_type enhancer-gene interactions genome_build hg38 cell_type HCT116 biosample_type Cell line biosample_term_id EFO:0002824 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,348,604 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_HCT116-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 e5a8fef95c16d9d1ec19b9c6450dd525 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_HCT116-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_int tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_HCT116-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19 link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/HCT116-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/HCT116-ENCODE_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 5ea8e5f3eae57ac276978a1a7d2d4219 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=HCT116-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11 system_category Digestive life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene HCT116 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Liver NGABCA7V2JFOTF • Nasser 2021 ABC enhancer gene ABC Liver Chromatin interactions Show metadata identifier NGABCA7V2JFOTF data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 68,160 bp_covered 26,052,863 output_type enhancer-gene interactions genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,550,327 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_liver-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 eef4a5db6fc0a2e1f812039b0a0b0a0c wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_liver-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_inte tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_liver-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_ link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/liver-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/liver-ENCODE_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 9118be46f0f69ce7eb2a5e0669955b54 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=liver-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature112 system_category Digestive life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Liver ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
THP-1 NGABCAEEBKNW7R • Nasser 2021 ABC enhancer gene ABC THP-1 Chromatin interactions Show metadata identifier NGABCAEEBKNW7R data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 62,594 bp_covered 18,008,686 output_type enhancer-gene interactions genome_build hg38 cell_type THP-1 biosample_type Cell line biosample_term_id EFO:0001253 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,162,943 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP1_LPS_4hr-Engreitz_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 7ad17a757a691bb04a8dd0bf29be7567 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP1_LPS_4hr-Engreitz_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4pl tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP1_LPS_4hr-Engreitz_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/be link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/THP1_LPS_4hr-Engreitz_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/THP1_LPS_4hr-Engreitz_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 19acdb1bcdeec64616222a920f5d83f2 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=THP1_LPS_4hr-Engreitz;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Engreitz;biosample_type_note=needs revising;source_pubmed=33828297;source_doi=https://doi. system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene THP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NCCIT NGABCAVK6V6OW4 • Nasser 2021 ABC enhancer gene ABC NCCIT Chromatin interactions Show metadata identifier NGABCAVK6V6OW4 data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 55,100 bp_covered 15,548,209 output_type enhancer-gene interactions genome_build hg38 cell_type NCCIT biosample_type Cell line biosample_term_id Not available tissue_category Male Reproductive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 3,611,442 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_NCCIT_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 e7262859b01851fa127610889b609e92 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_NCCIT_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_NCCIT_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interac link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/NCCIT_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/NCCIT_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 8abf9021d2f68cba3d3f51a6b3fd8fde data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=NCCIT;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=NCCIT;biosample_type_note=needs revising;source_pubmed=31784727;source_doi=10.1038/s41588-019-0538-0;abc_c system_category Reproductive life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene NCCIT ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
MM.1S NGABCAWXGO5T24 • Nasser 2021 ABC enhancer gene ABC MM.1S Chromatin interactions Show metadata identifier NGABCAWXGO5T24 data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 62,214 bp_covered 40,102,453 output_type enhancer-gene interactions genome_build hg38 cell_type MM.1S biosample_type Cell line biosample_term_id EFO:0005724 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,172,414 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_MM.1S-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 0dff612f48ff47baff2a4a7bcd487a8f wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_MM.1S-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_inte tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_MM.1S-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_ link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/MM.1S-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/MM.1S-ENCODE_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 dc9e1e28150ef1f1c8a9e4b4f29b7e7c data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=MM.1S-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature112 system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene MM.1S ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Macrophage NGABCAXICEYZLR • Nasser 2021 ABC enhancer gene ABC Macrophage Chromatin interactions Show metadata identifier NGABCAXICEYZLR data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 52,846 bp_covered 14,972,467 output_type enhancer-gene interactions genome_build hg38 cell_type Macrophage biosample_type Cell line biosample_term_id CL:0000235 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 3,475,010 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP-1_macrophage-VanBortle2017_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 996f72f6164631a8126e5ff35c249f06 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP-1_macrophage-VanBortle2017_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_mod tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP-1_macrophage-VanBortle2017_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/THP-1_macrophage-VanBortle2017_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/THP-1_macrophage-VanBortle2017_EnhancerPredictionsFull.txt.l raw_file_md5 ce49b18b66d17ea1ea43852ae101509a data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=THP-1_macrophage-VanBortle2017;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=VanBortle 2017;biosample_type_note=needs revising;source_pubmed=28931413;source_d system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Macrophage ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
THP-1 NGABCAYLX6P3HO • Nasser 2021 ABC enhancer gene ABC THP-1 Chromatin interactions Show metadata identifier NGABCAYLX6P3HO data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 61,862 bp_covered 18,341,705 output_type enhancer-gene interactions genome_build hg38 cell_type THP-1 biosample_type Cell line biosample_term_id EFO:0001253 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,088,811 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_0h_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 3efad20430ec40caf80b18f37561d1a8 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_0h_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus1 tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_0h_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4p link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/THP_pmaLPS_ATAC_0h_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/THP_pmaLPS_ATAC_0h_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 c975f1e3bf6c143f3c8aeed208d53fee data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=THP_pmaLPS_ATAC_0h;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Nasser_2021;biosample_type_note=needs revising;source_pubmed=33828297;source_doi=https://doi. system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene THP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Spleen NGABCAZZ67IZ6U • Nasser 2021 ABC enhancer gene ABC Spleen Chromatin interactions Show metadata identifier NGABCAZZ67IZ6U data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 62,804 bp_covered 22,628,049 output_type enhancer-gene interactions genome_build hg38 cell_type Spleen biosample_type Tissue biosample_term_id UBERON:0002106 tissue_category Immune Organ encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,180,073 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_spleen-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 baec65aa2b01c02eb78738345c7676ac wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_spleen-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_int tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_spleen-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19 link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/spleen-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/spleen-ENCODE_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 94cdc3143c0191fb28b6b2dadaaa7c70 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=spleen-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11 system_category Lymphatic life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Spleen ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Psoas muscle NGABCB6DDJ2HDH • Nasser 2021 ABC enhancer gene ABC Psoas muscle Chromatin interactions Show metadata identifier NGABCB6DDJ2HDH data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 61,950 bp_covered 34,604,575 output_type enhancer-gene interactions genome_build hg38 cell_type Psoas muscle biosample_type Primary tissue biosample_term_id UBERON:0008450 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,171,684 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_psoas_muscle-Roadmap_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 8d1712094d0db0d82f771b5b0f26974c wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_psoas_muscle-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plu tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_psoas_muscle-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/psoas_muscle-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/psoas_muscle-Roadmap_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 54313c8638e9d52f817d9d24796baaed data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=psoas_muscle-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/10.1038/ system_category Muscular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Psoas muscle ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
CD14+ monocyte NGABCBFPKD2UDP • Nasser 2021 ABC enhancer gene ABC CD14+ monocyte Chromatin interactions Show metadata identifier NGABCBFPKD2UDP data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 65,180 bp_covered 21,893,271 output_type enhancer-gene interactions genome_build hg38 cell_type CD14+ monocyte biosample_type Primary cell biosample_term_id CL:0001054 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,476,328 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte_treated_with_LPS_d1-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 988e974047eb3186c396b6ce2d723d9b wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte_treated_with_LPS_d1-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/A tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte_treated_with_LPS_d1-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_A link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD14-positive_monocyte_treated_with_LPS_d1-Novakovic2016_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD14-positive_monocyte_treated_wit raw_file_md5 2150e3f06ef16f3cf788ccbc83ba9c93 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=CD14-positive_monocyte_treated_with_LPS_d1-Novakovic2016;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Novakovic 2016;biosample_type_note=done;source_pubmed=2 system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene CD14+ monocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Neural progenitor cell NGABCBXGQE472R • Nasser 2021 ABC enhancer gene ABC Neural progenitor cell Chromatin interactions Show metadata identifier NGABCBXGQE472R data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 57,924 bp_covered 38,142,527 output_type enhancer-gene interactions genome_build hg38 cell_type Neural progenitor cell biosample_type Primary cell biosample_term_id CL:0011020 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,023,767 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_H1_Derived_Neuronal_Progenitor_Cultured_Cells-Roadmap_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 78fbbea5edc0cf7fcd5c4d6445e5d535 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_H1_Derived_Neuronal_Progenitor_Cultured_Cells-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_H1_Derived_Neuronal_Progenitor_Cultured_Cells-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/H1_Derived_Neuronal_Progenitor_Cultured_Cells-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/H1_Derived_Neuronal_Progenitor_Cultur raw_file_md5 2204777b051eb473383502d7fd04f636 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=H1_Derived_Neuronal_Progenitor_Cultured_Cells-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;so system_category Nervous life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Neural progenitor cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Endothelial cell NGABCBYMTNVP6S • Nasser 2021 ABC enhancer gene ABC Endothelial cell Chromatin interactions Show metadata identifier NGABCBYMTNVP6S data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 61,706 bp_covered 35,731,872 output_type enhancer-gene interactions genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Umbilical Cord encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,177,121 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_endothelial_cell_of_umbilical_vein-Roadmap_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 dd487c02dec332b76ce696ad02e021f6 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_endothelial_cell_of_umbilical_vein-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_endothelial_cell_of_umbilical_vein-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activit link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/endothelial_cell_of_umbilical_vein-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/endothelial_cell_of_umbilical_vein-Roadmap_Enhan raw_file_md5 6c2a7650401ac88750029cf396da7c2f data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=endothelial_cell_of_umbilical_vein-Roadmap;tissue_of_origin=Umbilical vein;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;sour system_category Embryo life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Endothelial cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Skeletal muscle tissue NGABCCAHAZYR72 • Nasser 2021 ABC enhancer gene ABC Skeletal muscle tissue Chromatin interactions Show metadata identifier NGABCCAHAZYR72 data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 58,436 bp_covered 42,739,262 output_type enhancer-gene interactions genome_build hg38 cell_type Skeletal muscle tissue biosample_type Primary cell biosample_term_id UBERON:0001134 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,037,408 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_muscle_of_leg_fetal-Roadmap_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 787bc1206f981cb0f6bead758d25fb14 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_muscle_of_leg_fetal-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_muscle_of_leg_fetal-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_mo link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/muscle_of_leg_fetal-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/muscle_of_leg_fetal-Roadmap_EnhancerPredictionsFull.txt.lifted. raw_file_md5 3846c12eeeaca70f5147b5ad70d776d2 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=muscle_of_leg_fetal-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/1 system_category Muscular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Skeletal muscle tissue ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Ventricle NGABCCH23HCQWY • Nasser 2021 ABC enhancer gene ABC Ventricle Chromatin interactions Show metadata identifier NGABCCH23HCQWY data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 64,742 bp_covered 20,852,027 output_type enhancer-gene interactions genome_build hg38 cell_type Ventricle biosample_type Tissue biosample_term_id UBERON:0002080 tissue_category Heart encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,342,671 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_heart_ventricle-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 c3e23ea59ae763e0c68cb9172cca7763 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_heart_ventricle-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4p tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_heart_ventricle-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/b link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/heart_ventricle-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/heart_ventricle-ENCODE_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 d9531b0f9d6c2dcf51f7f7a9331e119a data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=heart_ventricle-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038 system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Ventricle ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
U-937 NGABCCLRUM7SMC • Nasser 2021 ABC enhancer gene ABC U-937 Chromatin interactions Show metadata identifier NGABCCLRUM7SMC data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 61,386 bp_covered 16,996,505 output_type enhancer-gene interactions genome_build hg38 cell_type U-937 biosample_type Cell line biosample_term_id EFO:0001257 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,051,560 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_U937-Engreitz_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 9314f8866a717a5bd0ca4a54d5b7eff5 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_U937-Engreitz_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_int tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_U937-Engreitz_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19 link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/U937-Engreitz_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/U937-Engreitz_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 4b7be1af598b000916b0b00dd06236a4 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=U937-Engreitz;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Engreitz;biosample_type_note=needs revising;source_pubmed=33828297;source_doi=https://doi.org/10.1 system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene U-937 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Smooth muscle cell NGABCCPSAF33TL • Nasser 2021 ABC enhancer gene ABC Smooth muscle cell Chromatin interactions Show metadata identifier NGABCCPSAF33TL data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 53,438 bp_covered 17,820,389 output_type enhancer-gene interactions genome_build hg38 cell_type Smooth muscle cell biosample_type Primary cell biosample_term_id CL:0000192 tissue_category Blood Vessel encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 3,600,428 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_coronary_artery_smooth_muscle_cell-Miller2016_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 5d28d364771b2fdd112d2e0d44c25f7d wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_coronary_artery_smooth_muscle_cell-Miller2016_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_coronary_artery_smooth_muscle_cell-Miller2016_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Acti link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/coronary_artery_smooth_muscle_cell-Miller2016_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/coronary_artery_smooth_muscle_cell-Miller2016 raw_file_md5 3f779385540e156df10bf12267e1aba3 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=coronary_artery_smooth_muscle_cell-Miller2016;tissue_of_origin=Coronary artery;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Miller 2016;biosample_type_note=n system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Smooth muscle cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Epithelium NGABCCTJ6NR3GG • Nasser 2021 ABC enhancer gene ABC Epithelium Chromatin interactions Show metadata identifier NGABCCTJ6NR3GG data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 69,658 bp_covered 26,870,710 output_type enhancer-gene interactions genome_build hg38 cell_type Epithelium biosample_type Tissue biosample_term_id NCIT:C12710 tissue_category Breast encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,715,036 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_breast_epithelium-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 5b34b205a71d275cd4faf4298b222bea wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_breast_epithelium-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_breast_epithelium-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/breast_epithelium-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/breast_epithelium-ENCODE_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 6e761008e09a1324a63d8655c0b7561d data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=breast_epithelium-ENCODE;tissue_of_origin=Breast;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_d system_category Reproductive life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Epithelium ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
CD8+ alpha-beta T cell NGABCDEZH6BU5U • Nasser 2021 ABC enhancer gene ABC CD8+ alpha-beta T cell Chromatin interactions Show metadata identifier NGABCDEZH6BU5U data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 67,336 bp_covered 39,653,730 output_type enhancer-gene interactions genome_build hg38 cell_type CD8+ alpha-beta T cell biosample_type Primary cell biosample_term_id CL:0000625 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,635,215 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD8-positive_alpha-beta_T_cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 aa23210f71411417e3a7baf0835fdaf3 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD8-positive_alpha-beta_T_cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Cont tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD8-positive_alpha-beta_T_cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by- link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD8-positive_alpha-beta_T_cell-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD8-positive_alpha-beta_T_cell-ENCODE_EnhancerPredict raw_file_md5 6592ddcec853d0d439221bf26e24bad0 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=CD8-positive_alpha-beta_T_cell-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https:// system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene CD8+ alpha-beta T cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Dendritic cell NGABCDHGBNARTH • Nasser 2021 ABC enhancer gene ABC Dendritic cell Chromatin interactions Show metadata identifier NGABCDHGBNARTH data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 61,926 bp_covered 24,484,351 output_type enhancer-gene interactions genome_build hg38 cell_type Dendritic cell biosample_type In vitro differentiated cells biosample_term_id CL:0000451 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,263,666 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_2_hour-Garber2017_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 eb4494a21b578ad16237bd7004fa92c8 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_2_hour-Garber2017_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_li tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_2_hour-Garber2017_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg3 link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_2_hour-Garber2017_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/dendritic_ce raw_file_md5 ba3302220f1e7fd1b1d61ae3b1b60416 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_2_hour-Garber2017;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Garber 2017;biosample_type_note=n system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Dendritic cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
THP-1 NGABCDM32NKH7V • Nasser 2021 ABC enhancer gene ABC THP-1 Chromatin interactions Show metadata identifier NGABCDM32NKH7V data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 62,470 bp_covered 17,981,159 output_type enhancer-gene interactions genome_build hg38 cell_type THP-1 biosample_type Cell line biosample_term_id EFO:0001253 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,129,114 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_1h_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 d83968aebd888b16cd240f798dffe845 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_1h_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus1 tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_1h_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4p link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/THP_pmaLPS_ATAC_1h_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/THP_pmaLPS_ATAC_1h_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 9bf524b4e76f724b56a78610dbce6411 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=THP_pmaLPS_ATAC_1h;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Nasser_2021;biosample_type_note=needs revising;source_pubmed=33828297;source_doi=https://doi. system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene THP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]