consolidated • Astrocyte NGEPM47WOWCM37 • EpiMap Enhancers33536621 ChromHMM Astrocyte Enhancer Show metadata Download track Track metadata identifier NGEPM47WOWCM37 data_source EpiMap_Enhancers Download track Download number_of_intervals 163,851 bp_covered 102,393,600 output_type enhancer chromatin states genome_build hg38 cell_type Astrocyte biosample_type Primary cell biosample_term_id CL:0000127 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,510,693 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00089_ENCODE_2012_Enh_hg38.bed.gz processed_file_md5 fecca62c3d03d351613850e95601edcd wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00089_ENCODE_2012_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00089_ENCODE_2012_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00089_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00089_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00089_18_CALLS_segments.bed.gz raw_file_md5 d169820e6883a0752445bbbedaf0f76d data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=astrocyte;tissue_of_origin=Brain;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00089;extended_md.donor.ids=ENCDO916IIE;extended_md.collated.donors=ENCDO916IIE;extended_md.accession=ENCSR000AOQ,ENCSR000AOR,ENCSR000AQP,ENCSR000AQQ,ENCSR000AOS,ENCSR000AQR,ENCSR000AOT,ENCSR000AOU,ENCSR000EPM,ENCSR000ARS,ENCSR000ART,ENCSR000ARU;extended_md.biosample.ids=ENCBS021ENC,ENCBS020ENC,ENCBS052WQU,ENCBS020ENC,ENCBS096LWS,ENCBS096LWS,ENCBS020ENC;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Nervous life_stage Unknown track_name EpiMap_Enhancers Astrocyte ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]
consolidated • Lung NGEPM4A2WURDFG • EpiMap33536621 ChromHMM Lung Chromatin states Show metadata Download track Track metadata identifier NGEPM4A2WURDFG data_source EpiMap Download track Download number_of_intervals 416,083 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,055,922 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01186_Roadmap_2015_All_hg38.bed.gz processed_file_md5 0a1270d56b65d3665646d0ad17a0068b wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01186_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01186_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01186_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01186_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01186_18_CALLS_segments.bed.gz raw_file_md5 3f37006c883f4e5539aa68a35a2b2b6a data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=lung embryo (101 day);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01186;extended_md.donor.ids=ENCDO308YQF;extended_md.collated.donors=ENCDO308YQF;extended_md.accession=ENCSR986XLW,ENCSR413WJD;extended_md.biosample.ids=ENCBS346SSH,ENCBS907UWS;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=embryonic;extended_md.age=101;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Embryonic track_name EpiMap Lung ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Mammary NGEPM4AGVKVZIJ • EpiMap33536621 ChromHMM Mammary Chromatin states Show metadata Download track Track metadata identifier NGEPM4AGVKVZIJ data_source EpiMap Download track Download number_of_intervals 505,540 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Mammary biosample_type Primary cell biosample_term_id NCIT:C43595 tissue_category Breast encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,920,970 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01216_Roadmap_2021_All_hg38.bed.gz processed_file_md5 f76e3bb03a94dca22c40ac7cb4344555 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01216_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01216_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01216_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01216_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01216_18_CALLS_segments.bed.gz raw_file_md5 4d8f12a7552363be9a3f39902a1d305e data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=mammary stem cell female adult (33 years);tissue_of_origin=Breast;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01216;extended_md.donor.ids=ENCDO819SJC;extended_md.collated.donors=ENCDO819SJC;extended_md.accession=ENCSR635XBA;extended_md.biosample.ids=ENCBS399YGJ;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=33;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=CL:0002451;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap Mammary ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Epithelial cell NGEPM4AR27WVYY • EpiMap33536621 ChromHMM Epithelial cell Chromatin states Show metadata Download track Track metadata identifier NGEPM4AR27WVYY data_source EpiMap Download track Download number_of_intervals 478,649 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,668,718 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00153_ENCODE_All_hg38.bed.gz processed_file_md5 1b0dd3c53179ca6210b9b992c275846c wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00153_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00153_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00153_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00153_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00153_18_CALLS_segments.bed.gz raw_file_md5 3239a6bde334d07298b5c00e9ddd4560 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=bronchial epithelial cell female treated with 6 ?M retinoic acid for 48 hours;tissue_of_origin=Lung;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00153;extended_md.donor.ids=ENCDO099AAA;extended_md.collated.donors=ENCDO099AAA;extended_md.accession=ENCSR000EPN;extended_md.biosample.ids=ENCBS638NGV,ENCBS562ENC;extended_md.assay=DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Unknown track_name EpiMap Epithelial cell ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • Psoas muscle NGEPM4B6DZHUKM • EpiMap33536621 ChromHMM Psoas muscle Chromatin states Show metadata Download track Track metadata identifier NGEPM4B6DZHUKM data_source EpiMap Download track Download number_of_intervals 505,064 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Psoas muscle biosample_type Tissue biosample_term_id UBERON:0008450 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,863,334 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01462_Roadmap_2015_All_hg38.bed.gz processed_file_md5 e2a9cd3d3b5658f89c5ce58691943849 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01462_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01462_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01462_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01462_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01462_18_CALLS_segments.bed.gz raw_file_md5 e8f5f7ed946d7b621e71594182c1e15e data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=psoas muscle male adult (34 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01462;extended_md.donor.ids=ENCDO058AAA;extended_md.collated.donors=ENCDO058AAA;extended_md.accession=ENCSR720SAS,ENCSR791ISZ,ENCSR410UUH,ENCSR949OYZ;extended_md.biosample.ids=ENCBS138TCD;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=34;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=UBERON:0008450;is_hg38_lifted=no system_category Muscular life_stage Adult track_name EpiMap Psoas muscle ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • WI38 NGEPM4BZH5B4HI • EpiMap Enhancers33536621 ChromHMM WI38 Enhancer Show metadata Download track Track metadata identifier NGEPM4BZH5B4HI data_source EpiMap_Enhancers Download track Download number_of_intervals 137,775 bp_covered 93,210,600 output_type enhancer chromatin states genome_build hg38 cell_type WI38 biosample_type Cell line biosample_term_id EFO:0001260 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,286,969 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01891_ENCODE_Enh_hg38.bed.gz processed_file_md5 07c4afab016edb342337a47a72ab3a4c wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01891_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01891_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01891_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01891_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01891_18_CALLS_segments.bed.gz raw_file_md5 9a12ba389aa94d267ea4fff4a77c9f29 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=WI38;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01891;extended_md.donor.ids=ENCDO000ADU;extended_md.collated.donors=ENCDO000ADU;extended_md.accession=ENCSR000DXZ;extended_md.biosample.ids=ENCBS606ENC,ENCBS157XHV;extended_md.assay=ChIP-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0001260;is_hg38_lifted=no system_category Respiratory life_stage Unknown track_name EpiMap_Enhancers WI38 ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]
consolidated • MCF-7 NGEPM4C76NBJ7L • EpiMap33536621 ChromHMM MCF-7 Chromatin states Show metadata Download track Track metadata identifier NGEPM4C76NBJ7L data_source EpiMap Download track Download number_of_intervals 437,182 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,232,180 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01226_ENCODE_All_hg38.bed.gz processed_file_md5 e76aa13040c63038f847a8bb1185a762 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01226_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01226_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01226_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01226_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01226_18_CALLS_segments.bed.gz raw_file_md5 868c1cc2e086de976eddb8ce7c744983 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=MCF-7;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01226;extended_md.donor.ids=ENCDO000AAE;extended_md.collated.donors=ENCDO000AAE;extended_md.accession=ENCSR000EWO,ENCSR197XDQ,ENCSR985MIB,ENCSR875KOJ,ENCSR639RHG,ENCSR000EPJ,ENCSR000EWP,ENCSR000EWQ,ENCSR000EWR,ENCSR000DWJ,ENCSR056UBA,ENCSR610IYQ,ENCSR999WHE,ENCSR057MWG,ENCSR059ICA,ENCSR493NBY,ENCSR000EKV,ENCSR761DLU,ENCSR374RZR,ENCSR752UOD,ENCSR000EPH;extended_md.biosample.ids=ENCBS661RDG,ENCBS748WRO,ENCBS789UPK,ENCBS105ENC,ENCBS241AAA,ENCBS267CRP,ENCBS616ENC,ENCBS789UPK,ENCBS967MVZ,ENCBS614ENC,ENCBS967MVZ;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=69;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap MCF-7 ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Limb NGEPM4D6KSQ6RB • EpiMap Enhancers33536621 ChromHMM Limb Enhancer Show metadata Download track Track metadata identifier NGEPM4D6KSQ6RB data_source EpiMap_Enhancers Download track Download number_of_intervals 177,963 bp_covered 133,860,400 output_type enhancer chromatin states genome_build hg38 cell_type Limb biosample_type Tissue biosample_term_id UBERON:0002101 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,647,727 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01157_ENCODE_Enh_hg38.bed.gz processed_file_md5 0f06c90a9a7a2c54709a6b308d5fc0b8 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01157_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01157_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01157_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01157_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01157_18_CALLS_segments.bed.gz raw_file_md5 057750740e66cb9bca2d95e9f14d334b data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=limb embryo (58 days) and embryo (59 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01157;extended_md.donor.ids=ENCDO234CBV,ENCDO041UTR;extended_md.collated.donors=ENCDO234CBV,ENCDO041UTR;extended_md.accession=ENCSR532CRI;extended_md.biosample.ids=ENCBS301NVB,ENCBS872QKU;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=59,58;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=UBERON:0002101;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name EpiMap_Enhancers Limb ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • GM23248 NGEPM4ELCXTNJR • EpiMap33536621 ChromHMM GM23248 Chromatin states Show metadata Download track Track metadata identifier NGEPM4ELCXTNJR data_source EpiMap Download track Download number_of_intervals 443,108 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type GM23248 biosample_type Cell line biosample_term_id EFO:0005723 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,270,830 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00476_ENCODE_All_hg38.bed.gz processed_file_md5 5c5c089ec65180e521121072098d45cc wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00476_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00476_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00476_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00476_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00476_18_CALLS_segments.bed.gz raw_file_md5 5402b2e63fcb78fa03dce806fcb247a7 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=GM23248;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00476;extended_md.donor.ids=ENCDO336AAA;extended_md.collated.donors=ENCDO336AAA;extended_md.accession=ENCSR397TUH,ENCSR479HKJ,ENCSR124MTJ,ENCSR866KFY,ENCSR328AVV,ENCSR217TAW,ENCSR900AQX,ENCSR562MOC,ENCSR906NGD,ENCSR611CRY,ENCSR377QMP,ENCSR673OPX,ENCSR007YOT,ENCSR914AWT;extended_md.biosample.ids=ENCBS372AAA,ENCBS372AAA,ENCBS372AAA,ENCBS367AAA,ENCBS367AAA;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=53;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0005723;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name EpiMap GM23248 ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Common myeloid progenitor cell NGEPM4FVHDWRLA • EpiMap33536621 ChromHMM Common myeloid progenitor cell Chromatin states Show metadata Download track Track metadata identifier NGEPM4FVHDWRLA data_source EpiMap Download track Download number_of_intervals 546,875 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Common myeloid progenitor cell biosample_type Primary cell biosample_term_id NCIT:C12552 tissue_category Umbilical Cord encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,339,952 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00230_Roadmap_2021_All_hg38.bed.gz processed_file_md5 cacdffb328e3ef236fd75be5f16a041a wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00230_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00230_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00230_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00230_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00230_18_CALLS_segments.bed.gz raw_file_md5 daafab4cb5432542bee535a1cacd3b72 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=common myeloid progenitorCD34+ female;tissue_of_origin=Cord blood;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00230;extended_md.donor.ids=ENCDO950XTR;extended_md.collated.donors=ENCDO950XTR;extended_md.accession=ENCSR191EII;extended_md.biosample.ids=ENCBS912YBQ;extended_md.assay=DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name EpiMap Common myeloid progenitor cell ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • NAMALWA NGEPM4GE5U42VB • EpiMap Enhancers33536621 ChromHMM NAMALWA Enhancer Show metadata Download track Track metadata identifier NGEPM4GE5U42VB data_source EpiMap_Enhancers Download track Download number_of_intervals 115,875 bp_covered 90,880,600 output_type enhancer chromatin states genome_build hg38 cell_type NAMALWA biosample_type Cell line biosample_term_id EFO:0002246 tissue_category Immune encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,092,029 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01350_ENCODE_Enh_hg38.bed.gz processed_file_md5 a79c909f526f3b3cf61dcf718aa0faeb wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01350_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01350_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01350_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01350_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01350_18_CALLS_segments.bed.gz raw_file_md5 12acbd4d54f5b8e23bb2336b6f019d4c data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=NAMALWA;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01350;extended_md.donor.ids=ENCDO993XLR;extended_md.collated.donors=ENCDO993XLR;extended_md.accession=ENCSR662HMO;extended_md.biosample.ids=ENCBS105ISO,ENCBS499IUK;extended_md.assay=DNase-seq;extended_md.life.stage=child;extended_md.age=3;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0002246;is_hg38_lifted=no system_category Lymphatic life_stage Child track_name EpiMap_Enhancers NAMALWA ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Child] [Enhancer]
consolidated • Lung NGEPM4GJIAZNYM • EpiMap33536621 ChromHMM Lung Chromatin states Show metadata Download track Track metadata identifier NGEPM4GJIAZNYM data_source EpiMap Download track Download number_of_intervals 420,367 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,096,374 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01528_Roadmap_2021_All_hg38.bed.gz processed_file_md5 f05bbcee7d589b61ca9d657bbc62dfff wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01528_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01528_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01528_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01528_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01528_18_CALLS_segments.bed.gz raw_file_md5 2f17da673129e95407bf645fcd3550e7 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=right lung male embryo (115 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01528;extended_md.donor.ids=ENCDO816OTW;extended_md.collated.donors=ENCDO816OTW;extended_md.accession=ENCSR228BOM;extended_md.biosample.ids=ENCBS391UEN;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=115;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Embryonic track_name EpiMap Lung ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Adipose NGEPM4GJKOS42E • EpiMap Enhancers33536621 ChromHMM Adipose Enhancer Show metadata Download track Track metadata identifier NGEPM4GJKOS42E data_source EpiMap_Enhancers Download track Download number_of_intervals 210,190 bp_covered 152,202,600 output_type enhancer chromatin states genome_build hg38 cell_type Adipose biosample_type Tissue biosample_term_id NCIT:C12472 tissue_category Adipose encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,950,234 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01669_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 0cd80a425e77292fa6ca1230d72d892c wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01669_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01669_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01669_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01669_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01669_18_CALLS_segments.bed.gz raw_file_md5 736bfa9fcc743c5e2c526fb85ea7b0f2 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=subcutaneous abdominal adipose tissue nuclear fraction female adult (81 year);tissue_of_origin=Subcutaneous abdominal;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01669;extended_md.donor.ids=ENCDO120UGO;extended_md.collated.donors=ENCDO120UGO;extended_md.accession=ENCSR559RGT,ENCSR902OPY,ENCSR566VBK,ENCSR294PQF,ENCSR032FUX,ENCSR568CDB;extended_md.biosample.ids=ENCBS031YPO;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=81;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name EpiMap_Enhancers Adipose ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Renal cortex interstitium NGEPM4I4CVC4C6 • EpiMap Enhancers33536621 ChromHMM Renal cortex interstitium Enhancer Show metadata Download track Track metadata identifier NGEPM4I4CVC4C6 data_source EpiMap_Enhancers Download track Download number_of_intervals 85,150 bp_covered 57,687,600 output_type enhancer chromatin states genome_build hg38 cell_type Renal cortex interstitium biosample_type Tissue biosample_term_id UBERON:0005270 tissue_category Urinary encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 809,938 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01482_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 0def2fc8b4aaf9097804fe225201a746 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01482_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01482_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01482_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01482_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01482_18_CALLS_segments.bed.gz raw_file_md5 e6b8bdfa290b4920efec73d31b1e30ea data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=renal cortex interstitium female embryo (103 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01482;extended_md.donor.ids=ENCDO380HQH;extended_md.collated.donors=ENCDO380HQH;extended_md.accession=ENCSR656QYL;extended_md.biosample.ids=ENCBS345NEG;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=103;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap_Enhancers Renal cortex interstitium ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Fibroblast NGEPM4ICAZB6GR • EpiMap Enhancers33536621 ChromHMM Fibroblast Enhancer Show metadata Download track Track metadata identifier NGEPM4ICAZB6GR data_source EpiMap_Enhancers Download track Download number_of_intervals 162,690 bp_covered 106,979,400 output_type enhancer chromatin states genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,507,168 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00335_ENCODE_2012_Enh_hg38.bed.gz processed_file_md5 b9e5f41231242daf4512a48e8f9b3d94 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00335_ENCODE_2012_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00335_ENCODE_2012_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00335_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00335_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00335_18_CALLS_segments.bed.gz raw_file_md5 645a102ded5950587a6a6b1c63c80d50 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=fibroblast of dermis female adult;tissue_of_origin=Dermis;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00335;extended_md.donor.ids=ENCDO267AAA;extended_md.collated.donors=ENCDO267AAA;extended_md.accession=ENCSR000EPO;extended_md.biosample.ids=ENCBS338AAA,ENCBS832YVM;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name EpiMap_Enhancers Fibroblast ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Aorta NGEPM4ISBE36J4 • EpiMap33536621 ChromHMM Aorta Chromatin states Show metadata Download track Track metadata identifier NGEPM4ISBE36J4 data_source EpiMap Download track Download number_of_intervals 395,481 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Aorta biosample_type Tissue biosample_term_id UBERON:0000947 tissue_category Blood Vessel encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,772,298 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00079_Roadmap_2021_All_hg38.bed.gz processed_file_md5 f2d406cf43ac3c8de9e4d7480e4d5fec wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00079_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00079_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00079_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00079_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00079_18_CALLS_segments.bed.gz raw_file_md5 916bb59d2546487a91300e2b1b149c4f data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=aorta female adult (30 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00079;extended_md.donor.ids=ENCDO424HVB;extended_md.collated.donors=ENCDO424HVB;extended_md.accession=ENCSR322TJD,ENCSR989AMI,ENCSR128VHV,ENCSR848TLB,ENCSR960EVO;extended_md.biosample.ids=ENCBS674CSD;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=30;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap Aorta ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Kidney NGEPM4J6PRA5IS • EpiMap Enhancers33536621 ChromHMM Kidney Enhancer Show metadata Download track Track metadata identifier NGEPM4J6PRA5IS data_source EpiMap_Enhancers Download track Download number_of_intervals 128,124 bp_covered 89,118,600 output_type enhancer chromatin states genome_build hg38 cell_type Kidney biosample_type Tissue biosample_term_id UBERON:0002113 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,199,067 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01136_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 df2194f4dff9bc12cdf77b45e7b2da95 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01136_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01136_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01136_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01136_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01136_18_CALLS_segments.bed.gz raw_file_md5 db380edb0efc647a29c8ba44c8dd6dde data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=left kidney male embryo (96 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01136;extended_md.donor.ids=ENCDO817EKT;extended_md.collated.donors=ENCDO817EKT;extended_md.accession=ENCSR184DFF;extended_md.biosample.ids=ENCBS610XAP;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=96;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap_Enhancers Kidney ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Brain NGEPM4KEDZNG52 • EpiMap33536621 ChromHMM Brain Chromatin states Show metadata Download track Track metadata identifier NGEPM4KEDZNG52 data_source EpiMap Download track Download number_of_intervals 389,730 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Brain biosample_type Tissue biosample_term_id UBERON:0000955 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,820,627 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00140_ENCODE_All_hg38.bed.gz processed_file_md5 aaf8d4e71c2ee3ab08032e4c7e788bd8 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00140_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00140_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00140_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00140_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00140_18_CALLS_segments.bed.gz raw_file_md5 7ccacbf7a84b9cb1e8c930ba01ca7c2b data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=brain male embryo (105 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00140;extended_md.donor.ids=ENCDO908MUY;extended_md.collated.donors=ENCDO908MUY;extended_md.accession=ENCSR420RWU;extended_md.biosample.ids=ENCBS493ZWQ;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=105;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Nervous life_stage Embryonic track_name EpiMap Brain ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Pancreas NGEPM4KNUN6Y4X • EpiMap33536621 ChromHMM Pancreas Chromatin states Show metadata Download track Track metadata identifier NGEPM4KNUN6Y4X data_source EpiMap Download track Download number_of_intervals 233,301 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Pancreas biosample_type Tissue biosample_term_id UBERON:0001264 tissue_category Pancreas encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 2,231,489 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00122_ENCODE_All_hg38.bed.gz processed_file_md5 a75f44eaffdd464aa1489039350a9113 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00122_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00122_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00122_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00122_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00122_18_CALLS_segments.bed.gz raw_file_md5 f48ba916075b2243973388adf694ac17 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=body of pancreas female adult (53 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00122;extended_md.donor.ids=ENCDO793LXB;extended_md.collated.donors=ENCDO793LXB;extended_md.accession=ENCSR903GLL,ENCSR515CDW,ENCSR719COF,ENCSR421KNA,ENCSR429XBU,ENCSR748TFF;extended_md.biosample.ids=ENCBS207MJE,ENCBS372UUZ,ENCBS359OQR;extended_md.assay=ChIP-seq,ATAC-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=53;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name EpiMap Pancreas ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Middle frontal area BA46 NGEPM4KZP3QAWT • EpiMap33536621 ChromHMM Middle frontal area BA46 Chromatin states Show metadata Download track Track metadata identifier NGEPM4KZP3QAWT data_source EpiMap Download track Download number_of_intervals 517,402 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Middle frontal area BA46 biosample_type Tissue biosample_term_id UBERON:0006483 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,003,943 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01271_Roadmap_2015_All_hg38.bed.gz processed_file_md5 ac7f07d1bb5468ddce406584a6c39cb3 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01271_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01271_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01271_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01271_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01271_18_CALLS_segments.bed.gz raw_file_md5 79a795b7f32bbd4adf32a0c2a43140ac data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=middle frontal area 46 female adult (75 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01271;extended_md.donor.ids=ENCDO871IWW;extended_md.collated.donors=ENCDO871IWW;extended_md.accession=ENCSR629RJB,ENCSR448MML,ENCSR016XBE,ENCSR253JFN,ENCSR349III,ENCSR157EML;extended_md.biosample.ids=ENCBS335VCQ;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=75;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=UBERON:0006483;is_hg38_lifted=no system_category Nervous life_stage Adult track_name EpiMap Middle frontal area BA46 ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]