consolidated • Cardiac mesoderm NGEPM5RSXDGJ62 • EpiMap33536621 ChromHMM Cardiac mesoderm Chromatin states Show metadata Download track Track metadata identifier NGEPM5RSXDGJ62 data_source EpiMap Download track Download number_of_intervals 490,285 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Cardiac mesoderm biosample_type In vitro differentiated cells biosample_term_id UBERON:0000926 tissue_category Heart encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,781,594 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00169_ENCODE_All_hg38.bed.gz processed_file_md5 5d676b8865ca81250cb12095c51beac8 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00169_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00169_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00169_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00169_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00169_18_CALLS_segments.bed.gz raw_file_md5 5e66946124178d35c8e4a816e098ff60 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=cardiac mesoderm originated from H7-hESC;tissue_of_origin=Cardiac ventricle;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00169;extended_md.donor.ids=ENCDO221AAA;extended_md.collated.donors=ENCDO221AAA;extended_md.accession=ENCSR000EMY,ENCSR000DSK,ENCSR000DSL,ENCSR000DSM,ENCSR000DSO,ENCSR000DSP,ENCSR000DSD,ENCSR000DSE,ENCSR000DSF,ENCSR000DSG,ENCSR000EMV,ENCSR000DSH,ENCSR000EMW,ENCSR000DSI,ENCSR000EMX,ENCSR000DSJ;extended_md.biosample.ids=ENCBS430FQD,ENCBS296AAA,ENCBS303BHK,ENCBS395GPZ,ENCBS295AAA,ENCBS152EVQ,ENCBS824XSS,ENCBS395GPZ,ENCBS152EVQ,ENCBS297AAA,ENCBS093MVN,ENCBS824XSS,ENCBS138XIW,ENCBS532SEX,ENCBS173KZV,ENCBS294AAA,ENCBS093MVN,ENCBS303BHK,ENCBS173KZV,ENCBS360WQQ,ENCBS360WQQ,ENCBS138XIW;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=embryonic;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Embryonic track_name EpiMap Cardiac mesoderm ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Stomach NGEPM5SARJ3CG6 • EpiMap33536621 ChromHMM Stomach Chromatin states Show metadata Download track Track metadata identifier NGEPM5SARJ3CG6 data_source EpiMap Download track Download number_of_intervals 347,616 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Stomach biosample_type Tissue biosample_term_id UBERON:0000945 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,400,878 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01646_Roadmap_2015_All_hg38.bed.gz processed_file_md5 4dc281a833d7d2dbe8caee3873e5fa75 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01646_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01646_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01646_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01646_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01646_18_CALLS_segments.bed.gz raw_file_md5 3b3e3c5374d5f9a8a6cc9b5f5a779a1c data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=stomach female embryo (121 day);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01646;extended_md.donor.ids=ENCDO920LST;extended_md.collated.donors=ENCDO920LST;extended_md.accession=ENCSR282QFE;extended_md.biosample.ids=ENCBS493GWO;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=121;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name EpiMap Stomach ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Muscle NGEPM5SKEICPXF • EpiMap33536621 ChromHMM Muscle Chromatin states Show metadata Download track Track metadata identifier NGEPM5SKEICPXF data_source EpiMap Download track Download number_of_intervals 374,919 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Muscle biosample_type Tissue biosample_term_id NCIT:C13056 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,669,181 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01324_Roadmap_2015_All_hg38.bed.gz processed_file_md5 00aab55175661d0383ce89f7d2a0ac9e wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01324_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01324_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01324_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01324_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01324_18_CALLS_segments.bed.gz raw_file_md5 207e4d4d3cc664c5cb9fd0967b459cde data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=muscle of leg male embryo (104 days);tissue_of_origin=Leg;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01324;extended_md.donor.ids=ENCDO024JHT;extended_md.collated.donors=ENCDO024JHT;extended_md.accession=ENCSR861NUH;extended_md.biosample.ids=ENCBS841QUZ;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=104;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Embryonic track_name EpiMap Muscle ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Smooth muscle cell NGEPM5SMGRM5E5 • EpiMap Enhancers33536621 ChromHMM Smooth muscle cell Enhancer Show metadata Download track Track metadata identifier NGEPM5SMGRM5E5 data_source EpiMap_Enhancers Download track Download number_of_intervals 107,607 bp_covered 71,454,600 output_type enhancer chromatin states genome_build hg38 cell_type Smooth muscle cell biosample_type Primary cell biosample_term_id CL:0000192 tissue_category Blood Vessel encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,013,575 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01606_ENCODE_Enh_hg38.bed.gz processed_file_md5 6358b7a88c355528c0084ed2031f67a8 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01606_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01606_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01606_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01606_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01606_18_CALLS_segments.bed.gz raw_file_md5 1ce5b93faeb0cdb373bf114890362cef data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=smooth muscle cell of the brain vasculature female;tissue_of_origin=Brain vascular;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01606;extended_md.donor.ids=ENCDO229AAA;extended_md.collated.donors=ENCDO229AAA;extended_md.accession=ENCSR000ENG;extended_md.biosample.ids=ENCBS306AAA,ENCBS559NJN;extended_md.assay=DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name EpiMap_Enhancers Smooth muscle cell ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]
consolidated • Panc1 NGEPM5TVSUOCP2 • EpiMap33536621 ChromHMM Panc1 Chromatin states Show metadata Download track Track metadata identifier NGEPM5TVSUOCP2 data_source EpiMap Download track Download number_of_intervals 535,734 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Panc1 biosample_type Cell line biosample_term_id EFO:0002713 tissue_category Pancreas encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,203,061 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01405_ENCODE_All_hg38.bed.gz processed_file_md5 89d3e6018f6067b90b132281bf2c8389 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01405_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01405_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01405_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01405_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01405_18_CALLS_segments.bed.gz raw_file_md5 019e949d5b0d340442fa4e4733942a5b data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=Panc1;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01405;extended_md.donor.ids=ENCDO000ABB;extended_md.collated.donors=ENCDO000ABB;extended_md.accession=ENCSR000EXI,ENCSR000DXB,ENCSR000EXJ,ENCSR000FCM,ENCSR000FCN,ENCSR000EXK,ENCSR000EPT,ENCSR000FCO;extended_md.biosample.ids=ENCBS492WPY,ENCBS945URM,ENCBS466AAA,ENCBS399ENC,ENCBS467AAA,ENCBS397PLZ,ENCBS465AAA,ENCBS729QZR,ENCBS470AAA;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=unknown;extended_md.age=56;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0002713;is_hg38_lifted=no system_category Endocrine life_stage Unknown track_name EpiMap Panc1 ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • HT1080 NGEPM5WCMDIQPP • EpiMap33536621 ChromHMM HT1080 Chromatin states Show metadata Download track Track metadata identifier NGEPM5WCMDIQPP data_source EpiMap Download track Download number_of_intervals 470,380 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type HT1080 biosample_type Cell line biosample_term_id EFO:0002059 tissue_category Connective Tissue encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,583,400 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00709_ENCODE_All_hg38.bed.gz processed_file_md5 5671d0845aac4dea8b99e18969368cc8 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00709_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00709_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00709_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00709_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00709_18_CALLS_segments.bed.gz raw_file_md5 01e8928c645d91b7ce50fe33cdf6776c data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=HT1080;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00709;extended_md.donor.ids=ENCDO033CRF;extended_md.collated.donors=ENCDO033CRF;extended_md.accession=ENCSR000FDI;extended_md.biosample.ids=ENCBS513AAA,ENCBS512AAA;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=35;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0002059;is_hg38_lifted=no system_category Skeletal life_stage Adult track_name EpiMap HT1080 ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Chorion NGEPM5WNL7RU5X • EpiMap33536621 ChromHMM Chorion Chromatin states Show metadata Download track Track metadata identifier NGEPM5WNL7RU5X data_source EpiMap Download track Download number_of_intervals 504,822 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Chorion biosample_type Tissue biosample_term_id NCIT:C34122 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,930,493 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00209_ENCODE_All_hg38.bed.gz processed_file_md5 9de66e2c57edb7b29f87d04804ecd51d wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00209_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00209_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00209_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00209_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00209_18_CALLS_segments.bed.gz raw_file_md5 659a94e9a43fc72394de40a512d6d3cc data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=chorion;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00209;extended_md.donor.ids=ENCDO180AAA;extended_md.collated.donors=ENCDO180AAA;extended_md.accession=ENCSR000EIL;extended_md.biosample.ids=ENCBS121AAA;extended_md.assay=DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=UBERON:0003124;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name EpiMap Chorion ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • Muscle NGEPM5XLOC5QGG • EpiMap33536621 ChromHMM Muscle Chromatin states Show metadata Download track Track metadata identifier NGEPM5XLOC5QGG data_source EpiMap Download track Download number_of_intervals 350,083 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Muscle biosample_type Tissue biosample_term_id NCIT:C13056 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,434,007 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01306_Roadmap_2021_All_hg38.bed.gz processed_file_md5 f2254629d80d9951f7267ee4f58ced38 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01306_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01306_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01306_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01306_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01306_18_CALLS_segments.bed.gz raw_file_md5 f8860323a7ad7de30e1df3e174a9527e data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=muscle of back female embryo (113 days);tissue_of_origin=Back;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01306;extended_md.donor.ids=ENCDO676JUB;extended_md.collated.donors=ENCDO676JUB;extended_md.accession=ENCSR010ZMK;extended_md.biosample.ids=ENCBS769NYE;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=113;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Embryonic track_name EpiMap Muscle ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Common myeloid progenitor cell NGEPM5XQZZEZDA • EpiMap Enhancers33536621 ChromHMM Common myeloid progenitor cell Enhancer Show metadata Download track Track metadata identifier NGEPM5XQZZEZDA data_source EpiMap_Enhancers Download track Download number_of_intervals 97,860 bp_covered 71,144,000 output_type enhancer chromatin states genome_build hg38 cell_type Common myeloid progenitor cell biosample_type Primary cell biosample_term_id NCIT:C12552 tissue_category Umbilical Cord encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 927,299 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00232_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 63e790960328ea0c27a969f1454d0f8a wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00232_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00232_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00232_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00232_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00232_18_CALLS_segments.bed.gz raw_file_md5 8771df11e1a462f981f933e61ae23a36 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=common myeloid progenitorCD34+ female adult (33 years);tissue_of_origin=Cord blood;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00232;extended_md.donor.ids=ENCDO412QUR;extended_md.collated.donors=ENCDO412QUR;extended_md.accession=ENCSR355PUX,ENCSR957WQX,ENCSR136QKZ,ENCSR468ZXN,ENCSR401CJA,ENCSR620AZM,ENCSR164ROX;extended_md.biosample.ids=ENCBS007CJY,ENCBS007CJY,ENCBS121LTF,ENCBS121LTF;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=33;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Embryo life_stage Adult track_name EpiMap_Enhancers Common myeloid progenitor cell ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • SK-N-SH NGEPM5YPSQ577A • EpiMap33536621 ChromHMM SK-N-SH Chromatin states Show metadata Download track Track metadata identifier NGEPM5YPSQ577A data_source EpiMap Download track Download number_of_intervals 375,501 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,621,661 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01562_ENCODE_All_hg38.bed.gz processed_file_md5 c1a2c1c2e89e530b074b087285f938ef wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01562_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01562_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01562_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01562_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01562_18_CALLS_segments.bed.gz raw_file_md5 4d78b3999dbc5178a2e46e9a90d9679c data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=SK-N-SH;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01562;extended_md.donor.ids=ENCDO000ABD;extended_md.collated.donors=ENCDO000ABD;extended_md.accession=ENCSR423UOT,ENCSR366QMB,ENCSR000FCR,ENCSR125IJY,ENCSR564IGJ,ENCSR000FCS,ENCSR000FCT,ENCSR000FCU,ENCSR978CNH,ENCSR000ELQ,ENCSR000FCV,ENCSR975GZA,ENCSR661BMA,ENCSR914QOK,ENCSR878HPJ,ENCSR121INC,ENCSR791INM,ENCSR657OGA,ENCSR074TRC;extended_md.biosample.ids=ENCBS489AAA,ENCBS324TZB,ENCBS324TZB,ENCBS495AAA,ENCBS500EWH,ENCBS018DDZ,ENCBS018DDZ,ENCBS491AAA,ENCBS592MTQ,ENCBS490AAA,ENCBS500EWH,ENCBS492AAA,ENCBS500EWH,ENCBS492AAA;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=child;extended_md.age=4;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no system_category Nervous life_stage Child track_name EpiMap SK-N-SH ChromHMM consolidated chromatin states (bed9) [Life stage: Child] [Chromatin states]
consolidated • Skeletal muscle cell NGEPM5Z5MYO4OY • EpiMap Enhancers33536621 ChromHMM Skeletal muscle cell Enhancer Show metadata Download track Track metadata identifier NGEPM5Z5MYO4OY data_source EpiMap_Enhancers Download track Download number_of_intervals 124,828 bp_covered 82,905,400 output_type enhancer chromatin states genome_build hg38 cell_type Skeletal muscle cell biosample_type Primary cell biosample_term_id CL:0000188 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,169,426 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01572_ENCODE_Enh_hg38.bed.gz processed_file_md5 2412213a1590d72e802b6502c02b5b8f wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01572_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01572_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01572_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01572_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01572_18_CALLS_segments.bed.gz raw_file_md5 42d0fc69aaaeba7f82f86c49636bb5ab data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=skeletal muscle cell;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01572;extended_md.donor.ids=ENCDO094AAA;extended_md.collated.donors=ENCDO094AAA;extended_md.accession=ENCSR000DXT,ENCSR000EQA;extended_md.biosample.ids=ENCBS073ENC,ENCBS501OSZ,ENCBS909WFM,ENCBS335MXB;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Unknown track_name EpiMap_Enhancers Skeletal muscle cell ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]
consolidated • KBM-7 NGEPM626TGBMEZ • EpiMap33536621 ChromHMM KBM-7 Chromatin states Show metadata Download track Track metadata identifier NGEPM626TGBMEZ data_source EpiMap Download track Download number_of_intervals 537,016 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type KBM-7 biosample_type Cell line biosample_term_id EFO:0005903 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,248,144 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01066_ENCODE_All_hg38.bed.gz processed_file_md5 dc150580079a32f5e67a45672cec39aa wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01066_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01066_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01066_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01066_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01066_18_CALLS_segments.bed.gz raw_file_md5 262ac0dc5172aa83de9e1714da2ab74d data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=KBM-7;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01066;extended_md.donor.ids=ENCDO763VKT;extended_md.collated.donors=ENCDO763VKT;extended_md.accession=ENCSR426IEA;extended_md.biosample.ids=ENCBS322FGS,ENCBS815EDC;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=44;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0005903;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap KBM-7 ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Kidney NGEPM63ZKZ3YS3 • EpiMap Enhancers33536621 ChromHMM Kidney Enhancer Show metadata Download track Track metadata identifier NGEPM63ZKZ3YS3 data_source EpiMap_Enhancers Download track Download number_of_intervals 123,548 bp_covered 84,316,600 output_type enhancer chromatin states genome_build hg38 cell_type Kidney biosample_type Tissue biosample_term_id UBERON:0002113 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,156,424 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01129_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 0e5b5f912a539b66d447c534b17370b6 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01129_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01129_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01129_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01129_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01129_18_CALLS_segments.bed.gz raw_file_md5 2c82e27c51e589d0ee5ed3701efb0ecc data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=left kidney female embryo (110 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01129;extended_md.donor.ids=ENCDO087TLK;extended_md.collated.donors=ENCDO087TLK;extended_md.accession=ENCSR974TXT;extended_md.biosample.ids=ENCBS629UDA;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=110;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap_Enhancers Kidney ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Brain NGEPM64FIOVYCS • EpiMap33536621 ChromHMM Brain Chromatin states Show metadata Download track Track metadata identifier NGEPM64FIOVYCS data_source EpiMap Download track Download number_of_intervals 524,706 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Brain biosample_type Tissue biosample_term_id UBERON:0000955 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,094,678 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00134_Roadmap_2015_All_hg38.bed.gz processed_file_md5 f481365e9d6b7c72734fe2115c6ff254 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00134_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00134_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00134_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00134_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00134_18_CALLS_segments.bed.gz raw_file_md5 7ead541c2ecaca59f341a50e63477a4c data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=brain female embryo (17 weeks);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00134;extended_md.donor.ids=ENCDO981EWY,ENCDO030VWZ;extended_md.collated.donors=ENCDO981EWY,ENCDO030VWZ;extended_md.accession=ENCSR997YTW,ENCSR386JEL,ENCSR780FXX,ENCSR146KXZ,ENCSR869WSC;extended_md.biosample.ids=ENCBS618VRU,ENCBS295DKP;extended_md.assay=ChIP-seq;extended_md.life.stage=embryonic;extended_md.age=17;extended_md.age.units=week;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Nervous life_stage Embryonic track_name EpiMap Brain ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Ishikawa NGEPM64TYFFXFZ • EpiMap Enhancers33536621 ChromHMM Ishikawa Enhancer Show metadata Download track Track metadata identifier NGEPM64TYFFXFZ data_source EpiMap_Enhancers Download track Download number_of_intervals 162,721 bp_covered 125,932,000 output_type enhancer chromatin states genome_build hg38 cell_type Ishikawa biosample_type Cell line biosample_term_id EFO:0005718 tissue_category Female Reproductive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,510,806 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00748_ENCODE_Enh_hg38.bed.gz processed_file_md5 16d6bd5fbcab6ced8a8b6cb79e21a176 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00748_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00748_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00748_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00748_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00748_18_CALLS_segments.bed.gz raw_file_md5 c4945b99511dbf62bead5ae3b1c77811 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=Ishikawa treated with 10 nM 17?-estradiol for 30 minutes;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00748;extended_md.donor.ids=ENCDO000ACV;extended_md.collated.donors=ENCDO000ACV;extended_md.accession=ENCSR000EIO,ENCSR000EKM;extended_md.biosample.ids=ENCBS230AAA,ENCBS767JJY;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=39;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0005718;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap_Enhancers Ishikawa ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Muscle NGEPM65MWPCEUF • EpiMap33536621 ChromHMM Muscle Chromatin states Show metadata Download track Track metadata identifier NGEPM65MWPCEUF data_source EpiMap Download track Download number_of_intervals 419,461 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Muscle biosample_type Tissue biosample_term_id NCIT:C13056 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,104,411 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01316_Roadmap_2021_All_hg38.bed.gz processed_file_md5 6ff6ae223aab3e80aeca2e3fcbb1e8b4 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01316_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01316_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01316_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01316_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01316_18_CALLS_segments.bed.gz raw_file_md5 363033c9bf031aee63625343ad7ed4ef data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=muscle of back male embryo (96 days);tissue_of_origin=Back;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01316;extended_md.donor.ids=ENCDO220PYT,ENCDO817EKT;extended_md.collated.donors=ENCDO817EKT,ENCDO220PYT;extended_md.accession=ENCSR698CUE,ENCSR438TWI;extended_md.biosample.ids=ENCBS630IBZ,ENCBS479AOA;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=96;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Embryonic track_name EpiMap Muscle ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Amnion NGEPM66EL6GM7E • EpiMap33536621 ChromHMM Amnion Chromatin states Show metadata Download track Track metadata identifier NGEPM66EL6GM7E data_source EpiMap Download track Download number_of_intervals 475,533 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Amnion biosample_type Primary cell biosample_term_id UBERON:0000305 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,627,800 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00076_ENCODE_All_hg38.bed.gz processed_file_md5 c2331bae24e766efb007e69c2ccb6c0a wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00076_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00076_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00076_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00076_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00076_18_CALLS_segments.bed.gz raw_file_md5 0328ba13587789378d13ad2eb01a28cb data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=amniotic stem cell male embryo (15 weeks);tissue_of_origin=Embryo;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00076;extended_md.donor.ids=ENCDO942PSS;extended_md.collated.donors=ENCDO942PSS;extended_md.accession=ENCSR207TUX;extended_md.biosample.ids=ENCBS431HXX;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=15;extended_md.age.units=week;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name EpiMap Amnion ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Epithelium NGEPM66KXTO3F3 • EpiMap33536621 ChromHMM Epithelium Chromatin states Show metadata Download track Track metadata identifier NGEPM66KXTO3F3 data_source EpiMap Download track Download number_of_intervals 501,364 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Epithelium biosample_type Tissue biosample_term_id NCIT:C12710 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,864,950 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00325_ENCODE_All_hg38.bed.gz processed_file_md5 3a2bc8adf2e3019eb21042420555636a wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00325_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00325_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00325_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00325_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00325_18_CALLS_segments.bed.gz raw_file_md5 4880b08105c6205ac93b800abd4b6f3a data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=esophagus squamous epithelium female adult (53 years);tissue_of_origin=Esophagus squamous;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00325;extended_md.donor.ids=ENCDO793LXB;extended_md.collated.donors=ENCDO793LXB;extended_md.accession=ENCSR078ZGC,ENCSR508UPW,ENCSR909UAG,ENCSR057BFO,ENCSR057YVO,ENCSR121RSS;extended_md.biosample.ids=ENCBS054JUC;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=53;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Adult track_name EpiMap Epithelium ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Heart NGEPM66L42A2R2 • EpiMap Enhancers33536621 ChromHMM Heart Enhancer Show metadata Download track Track metadata identifier NGEPM66L42A2R2 data_source EpiMap_Enhancers Download track Download number_of_intervals 145,623 bp_covered 112,755,800 output_type enhancer chromatin states genome_build hg38 cell_type Heart biosample_type Tissue biosample_term_id NCIT:C12727 tissue_category Heart encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,346,765 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00503_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 a6a08a9e173d0ca7b37d97a4fd9d1503 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00503_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00503_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00503_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00503_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00503_18_CALLS_segments.bed.gz raw_file_md5 2074656cd32ed6a9f8d9e4a4c572c069 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=heart female embryo (147 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00503;extended_md.donor.ids=ENCDO863JOG;extended_md.collated.donors=ENCDO863JOG;extended_md.accession=ENCSR533VAF;extended_md.biosample.ids=ENCBS708NLN;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=147;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Embryonic track_name EpiMap_Enhancers Heart ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Layer - hippocampus NGEPM66R2PQL4L • EpiMap Enhancers33536621 ChromHMM Layer - hippocampus Enhancer Show metadata Download track Track metadata identifier NGEPM66R2PQL4L data_source EpiMap_Enhancers Download track Download number_of_intervals 168,997 bp_covered 116,424,200 output_type enhancer chromatin states genome_build hg38 cell_type Layer - hippocampus biosample_type Tissue biosample_term_id UBERON:0002305 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,568,160 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01124_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 e59f5b3cecb3ebdeede47c323161fb64 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01124_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01124_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01124_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01124_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01124_18_CALLS_segments.bed.gz raw_file_md5 5d2c82096de77dc31abc838ae11b9f65 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=layer of hippocampus female adult (75 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01124;extended_md.donor.ids=ENCDO871IWW;extended_md.collated.donors=ENCDO871IWW;extended_md.accession=ENCSR804RMP,ENCSR892RZN,ENCSR123HEE,ENCSR638HSG,ENCSR431FZZ,ENCSR286VMZ,ENCSR418JIS;extended_md.biosample.ids=ENCBS769ZVS;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=75;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=UBERON:0002305;is_hg38_lifted=no system_category Nervous life_stage Adult track_name EpiMap_Enhancers Layer - hippocampus ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]