consolidated • Lung NGEPM6QVO3S2K4 • EpiMap33536621 ChromHMM Lung Chromatin states Show metadata Download track Track metadata identifier NGEPM6QVO3S2K4 data_source EpiMap Download track Download number_of_intervals 421,372 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,108,416 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01145_Roadmap_2021_All_hg38.bed.gz processed_file_md5 6bafe816091b23cfe4936581ed524bcb wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01145_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01145_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01145_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01145_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01145_18_CALLS_segments.bed.gz raw_file_md5 d2a4f4e65c7971ebc82fcc59b87464d5 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=left lung male embryo (113 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01145;extended_md.donor.ids=ENCDO608XKS;extended_md.collated.donors=ENCDO608XKS;extended_md.accession=ENCSR488PHT;extended_md.biosample.ids=ENCBS960KKK;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=113;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Embryonic track_name EpiMap Lung ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Muscularis mucosa NGEPM6RSVU3BT6 • EpiMap Enhancers33536621 ChromHMM Muscularis mucosa Enhancer Show metadata Download track Track metadata identifier NGEPM6RSVU3BT6 data_source EpiMap_Enhancers Download track Download number_of_intervals 51,342 bp_covered 61,304,200 output_type enhancer chromatin states genome_build hg38 cell_type Muscularis mucosa biosample_type Tissue biosample_term_id UBERON:0006676 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 490,138 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00322_ENCODE_Enh_hg38.bed.gz processed_file_md5 749f15deabcefe87caf37685b83884af wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00322_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00322_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00322_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00322_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00322_18_CALLS_segments.bed.gz raw_file_md5 fa90999ad18e822b1598e0efc545ead8 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=esophagus muscularis mucosa male adult (37 years);tissue_of_origin=Esophagus;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00322;extended_md.donor.ids=ENCDO845WKR;extended_md.collated.donors=ENCDO845WKR;extended_md.accession=ENCSR944JCE;extended_md.biosample.ids=ENCBS721REO;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=37;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=UBERON:0004648;is_hg38_lifted=no system_category Digestive life_stage Adult track_name EpiMap_Enhancers Muscularis mucosa ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Adipocyte NGEPM6SQSQ52TB • EpiMap Enhancers33536621 ChromHMM Adipocyte Enhancer Show metadata Download track Track metadata identifier NGEPM6SQSQ52TB data_source EpiMap_Enhancers Download track Download number_of_intervals 119,994 bp_covered 78,311,000 output_type enhancer chromatin states genome_build hg38 cell_type Adipocyte biosample_type In vitro differentiated cells biosample_term_id CL:0000136 tissue_category Adipose encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,118,632 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00038_ENCODE_Enh_hg38.bed.gz processed_file_md5 b9b86ddc26f506504f4784030926d220 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00038_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00038_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00038_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00038_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00038_18_CALLS_segments.bed.gz raw_file_md5 6e2aac3afd48b9ee8409915ae0b56f09 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=adipocyte;tissue_of_origin=Adipose;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00038;extended_md.donor.ids=ENCDO029QEV;extended_md.collated.donors=ENCDO029QEV;extended_md.accession=ENCSR405TXU;extended_md.biosample.ids=ENCBS754GFE,ENCBS311PRF;extended_md.assay=DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Integumentary life_stage Unknown track_name EpiMap_Enhancers Adipocyte ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]
consolidated • Naive CD4 alpha-beta T cell NGEPM6TR7RNOCT • EpiMap33536621 ChromHMM Naive CD4 alpha-beta T cell Chromatin states Show metadata Download track Track metadata identifier NGEPM6TR7RNOCT data_source EpiMap Download track Download number_of_intervals 445,321 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Naive CD4 alpha-beta T cell biosample_type Primary cell biosample_term_id CL:0000895 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,343,245 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01348_ENCODE_All_hg38.bed.gz processed_file_md5 e2c5d769dd2ef20e3abc0d06f643d135 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01348_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01348_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01348_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01348_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01348_18_CALLS_segments.bed.gz raw_file_md5 ec7041bdd929180c2e2d55a69a810de6 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=naive thymus-derived CD4+alpha-beta T cell male adult (26 years);tissue_of_origin=Thymus;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01348;extended_md.donor.ids=ENCDO177AAA;extended_md.collated.donors=ENCDO177AAA;extended_md.accession=ENCSR000EML;extended_md.biosample.ids=ENCBS119AAA;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=26;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap Naive CD4 alpha-beta T cell ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Mucosa NGEPM6VP6BORLX • EpiMap33536621 ChromHMM Mucosa Chromatin states Show metadata Download track Track metadata identifier NGEPM6VP6BORLX data_source EpiMap Download track Download number_of_intervals 359,021 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Mucosa biosample_type Tissue biosample_term_id UBERON:0000344 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,458,105 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00227_Roadmap_2021_All_hg38.bed.gz processed_file_md5 bf014201dbd6e4bc587932e8bd2ee4bf wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00227_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00227_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00227_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00227_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00227_18_CALLS_segments.bed.gz raw_file_md5 8bd458caf8d41b56aaf426c7de266dda data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=colonic mucosa female adult (56 years);tissue_of_origin=Colon;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00227;extended_md.donor.ids=ENCDO438RUL;extended_md.collated.donors=ENCDO438RUL;extended_md.accession=ENCSR714BDG,ENCSR749ANR,ENCSR322FGP,ENCSR175XPY,ENCSR328KRD,ENCSR831LTX,ENCSR024DUV;extended_md.biosample.ids=ENCBS601ZFR,ENCBS929ZQQ;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=56;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Adult track_name EpiMap Mucosa ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • CD14+ monocyte NGEPM6WM4M3EMH • EpiMap33536621 ChromHMM CD14+ monocyte Chromatin states Show metadata Download track Track metadata identifier NGEPM6WM4M3EMH data_source EpiMap Download track Download number_of_intervals 566,768 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type CD14+ monocyte biosample_type Primary cell biosample_term_id CL:0001054 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,531,042 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00178_ENCODE_2012_All_hg38.bed.gz processed_file_md5 16227991c2fb202d6c5cb803e369c5af wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00178_ENCODE_2012_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00178_ENCODE_2012_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00178_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00178_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00178_18_CALLS_segments.bed.gz raw_file_md5 373be5e1be1e25389b834742b5b82a14 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=CD14+ monocyte female;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00178;extended_md.donor.ids=ENCDO266AAA,ENCDO265AAA,ENCDO265AAA;extended_md.collated.donors=ENCDO266AAA,ENCDO265AAA,ENCDO265AAA;extended_md.accession=ENCSR000ASM,ENCSR000ASN,ENCSR000EPK,ENCSR000ASO,ENCSR000ASP,ENCSR000ASQ,ENCSR000DWL,ENCSR000ELE,ENCSR000ATE,ENCSR000DWM,ENCSR000ATF,ENCSR000ASI,ENCSR000ASJ,ENCSR000ASK,ENCSR000ASL;extended_md.biosample.ids=ENCBS629ENC,ENCBS628ENC,ENCBS609ENC,ENCBS865RXK,ENCBS477CHZ,ENCBS865RXK,ENCBS188BKX,ENCBS188BKX;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name EpiMap CD14+ monocyte ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • Cingulate gyrus NGEPM6X2Y6WD6C • EpiMap33536621 ChromHMM Cingulate gyrus Chromatin states Show metadata Download track Track metadata identifier NGEPM6X2Y6WD6C data_source EpiMap Download track Download number_of_intervals 551,017 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Cingulate gyrus biosample_type Tissue biosample_term_id UBERON:0002967 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,311,607 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00220_Roadmap_2015_All_hg38.bed.gz processed_file_md5 c62f554614f3cee2919ad63f8cf0483e wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00220_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00220_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00220_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00220_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00220_18_CALLS_segments.bed.gz raw_file_md5 8685c102dd1763248546cd78581d6164 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=cingulate gyrus male adult (81 year);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00220;extended_md.donor.ids=ENCDO980BZD;extended_md.collated.donors=ENCDO980BZD;extended_md.accession=ENCSR736SFP,ENCSR070GTK,ENCSR022LOH,ENCSR032BMQ,ENCSR443NEP,ENCSR355UYP;extended_md.biosample.ids=ENCBS008HYR,ENCBS678HGK;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=81;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Nervous life_stage Adult track_name EpiMap Cingulate gyrus ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Pancreas NGEPM6XHXJMMMJ • EpiMap Enhancers33536621 ChromHMM Pancreas Enhancer Show metadata Download track Track metadata identifier NGEPM6XHXJMMMJ data_source EpiMap_Enhancers Download track Download number_of_intervals 64,073 bp_covered 58,836,000 output_type enhancer chromatin states genome_build hg38 cell_type Pancreas biosample_type Tissue biosample_term_id UBERON:0001264 tissue_category Pancreas encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 615,261 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00283_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 800abaa0bb53df37f8d0fac88c622c2b wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00283_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00283_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00283_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00283_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00283_18_CALLS_segments.bed.gz raw_file_md5 b2c404a2d95f915ef455495c158c36b2 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=endocrine pancreas male adult (45 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00283;extended_md.donor.ids=ENCDO543FPW;extended_md.collated.donors=ENCDO543FPW;extended_md.accession=ENCSR324JDC,ENCSR957UQS;extended_md.biosample.ids=ENCBS721SKH;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=45;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name EpiMap_Enhancers Pancreas ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Ammon's horn NGEPM6ZYJ2SLUQ • EpiMap33536621 ChromHMM Ammon's horn Chromatin states Show metadata Download track Track metadata identifier NGEPM6ZYJ2SLUQ data_source EpiMap Download track Download number_of_intervals 284,452 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Ammon's horn biosample_type Tissue biosample_term_id UBERON:0001954 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 2,796,946 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00071_ENCODE_All_hg38.bed.gz processed_file_md5 fc1101d15f5f77384f94b378f9f602d7 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00071_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00071_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00071_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00071_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00071_18_CALLS_segments.bed.gz raw_file_md5 baa30a6c154446fc1723b9d1259f286d data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=Ammon's horn male adult (84 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00071;extended_md.donor.ids=ENCDO240JUB;extended_md.collated.donors=ENCDO240JUB;extended_md.accession=ENCSR584LUZ;extended_md.biosample.ids=ENCBS163WOJ;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=84;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=UBERON:0001954;is_hg38_lifted=no system_category Nervous life_stage Adult track_name EpiMap Ammon's horn ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • MCF 10A NGEPM724XD65A2 • EpiMap Enhancers33536621 ChromHMM MCF 10A Enhancer Show metadata Download track Track metadata identifier NGEPM724XD65A2 data_source EpiMap_Enhancers Download track Download number_of_intervals 144,607 bp_covered 102,419,200 output_type enhancer chromatin states genome_build hg38 cell_type MCF 10A biosample_type Cell line biosample_term_id EFO:0001200 tissue_category Breast encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,340,345 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01225_ENCODE_Enh_hg38.bed.gz processed_file_md5 e35c059bf56ed222276cbc1a2d346b4e wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01225_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01225_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01225_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01225_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01225_18_CALLS_segments.bed.gz raw_file_md5 5e5317226627dcadc75b7000767be1ec data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=MCF 10A treated with 1 ?M tamoxifen for 6 hours;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01225;extended_md.donor.ids=ENCDO000AAP;extended_md.collated.donors=ENCDO000AAP;extended_md.accession=ENCSR385SZQ;extended_md.biosample.ids=ENCBS317EPD;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=36;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0001200;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap_Enhancers MCF 10A ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • OCI-LY7 NGEPM72FLNKHSY • EpiMap33536621 ChromHMM OCI-LY7 Chromatin states Show metadata Download track Track metadata identifier NGEPM72FLNKHSY data_source EpiMap Download track Download number_of_intervals 360,084 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type OCI-LY7 biosample_type Cell line biosample_term_id EFO:0006711 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,508,528 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01391_ENCODE_All_hg38.bed.gz processed_file_md5 fd65d921d77ef86e5374a63acbc18e1e wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01391_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01391_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01391_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01391_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01391_18_CALLS_segments.bed.gz raw_file_md5 429dee1c885505a3cad218136e679381 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=OCI-LY7;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01391;extended_md.donor.ids=ENCDO351AAA;extended_md.collated.donors=ENCDO351AAA;extended_md.accession=ENCSR331RGM,ENCSR243AIS,ENCSR199KHR,ENCSR850QKN,ENCSR489NAM,ENCSR347DAG,ENCSR060WGK,ENCSR447ZGY,ENCSR005SXO,ENCSR747ZDF,ENCSR389WWC;extended_md.biosample.ids=ENCBS006VZG,ENCBS886BJZ,ENCBS699NWP,ENCBS006VZG,ENCBS304FAI,ENCBS699NWP,ENCBS304FAI,ENCBS121JKZ,ENCBS581USS,ENCBS141AMI,ENCBS886BJZ,ENCBS121JKZ,ENCBS040MJM;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=48;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0006711;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap OCI-LY7 ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Common myeloid progenitor cell NGEPM72SDNKY6B • EpiMap Enhancers33536621 ChromHMM Common myeloid progenitor cell Enhancer Show metadata Download track Track metadata identifier NGEPM72SDNKY6B data_source EpiMap_Enhancers Download track Download number_of_intervals 119,334 bp_covered 91,180,800 output_type enhancer chromatin states genome_build hg38 cell_type Common myeloid progenitor cell biosample_type Primary cell biosample_term_id NCIT:C12552 tissue_category Umbilical Cord encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,126,773 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00241_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 347436a65adbfc80f52dcc362533c921 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00241_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00241_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00241_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00241_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00241_18_CALLS_segments.bed.gz raw_file_md5 60d72cedec3b1f348f99995014c9dc9f data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=common myeloid progenitorCD34+ male adult (49 years);tissue_of_origin=Cord blood;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00241;extended_md.donor.ids=ENCDO898ATX;extended_md.collated.donors=ENCDO898ATX;extended_md.accession=ENCSR281HBB;extended_md.biosample.ids=ENCBS320LLR;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=49;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Embryo life_stage Adult track_name EpiMap_Enhancers Common myeloid progenitor cell ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • CD4+ alpha-beta T cell NGEPM732ANSKRP • EpiMap Enhancers33536621 ChromHMM CD4+ alpha-beta T cell Enhancer Show metadata Download track Track metadata identifier NGEPM732ANSKRP data_source EpiMap_Enhancers Download track Download number_of_intervals 128,685 bp_covered 98,710,600 output_type enhancer chromatin states genome_build hg38 cell_type CD4+ alpha-beta T cell biosample_type Primary cell biosample_term_id CL:0000624 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,213,591 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00190_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 faaa477a998dffde1d4d61b8c0b60713 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00190_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00190_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00190_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00190_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00190_18_CALLS_segments.bed.gz raw_file_md5 6bf82ca88b22aad0f2233b2f44428a2a data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=CD4+alpha-beta T cell male adult (37 years);tissue_of_origin=Blood;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00190;extended_md.donor.ids=ENCDO028NGF;extended_md.collated.donors=ENCDO028NGF;extended_md.accession=ENCSR425MRQ,ENCSR787WLV,ENCSR466XPN,ENCSR774OKQ,ENCSR167JFX;extended_md.biosample.ids=ENCBS473JVM,ENCBS517HTQ;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=37;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap_Enhancers CD4+ alpha-beta T cell ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • KMS-11 NGEPM73M4FNQUV • EpiMap Enhancers33536621 ChromHMM KMS-11 Enhancer Show metadata Download track Track metadata identifier NGEPM73M4FNQUV data_source EpiMap_Enhancers Download track Download number_of_intervals 92,617 bp_covered 81,525,800 output_type enhancer chromatin states genome_build hg38 cell_type KMS-11 biosample_type Cell line biosample_term_id EFO:0005694 tissue_category Immune encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 858,389 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01104_ENCODE_Enh_hg38.bed.gz processed_file_md5 c029194a4d7b7a3eb1deda274fdf704b wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01104_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01104_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01104_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01104_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01104_18_CALLS_segments.bed.gz raw_file_md5 1d86edcfef8ae8a6077cda68a9126b4c data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=KMS-11;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01104;extended_md.donor.ids=ENCDO133EXU;extended_md.collated.donors=ENCDO133EXU;extended_md.accession=ENCSR955IXZ,ENCSR790QWJ,ENCSR499RMZ,ENCSR847UJW,ENCSR521AIV,ENCSR539TKY,ENCSR474VGQ,ENCSR806XIU,ENCSR835YBD,ENCSR976JHS;extended_md.biosample.ids=ENCBS987CHP,ENCBS987CHP,ENCBS682HMC,ENCBS682HMC;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=67;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0005694;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name EpiMap_Enhancers KMS-11 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Muscle NGEPM73N6FHYVR • EpiMap Enhancers33536621 ChromHMM Muscle Enhancer Show metadata Download track Track metadata identifier NGEPM73N6FHYVR data_source EpiMap_Enhancers Download track Download number_of_intervals 95,691 bp_covered 64,801,400 output_type enhancer chromatin states genome_build hg38 cell_type Muscle biosample_type Tissue biosample_term_id NCIT:C13056 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 905,241 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01307_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 e6c4598858e1c30e2e8e39790e2793be wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01307_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01307_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01307_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01307_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01307_18_CALLS_segments.bed.gz raw_file_md5 2ca60dac5d960bc6cc30608f82529f8d data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=muscle of back female embryo (115 days);tissue_of_origin=Back;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01307;extended_md.donor.ids=ENCDO594VTA;extended_md.collated.donors=ENCDO594VTA;extended_md.accession=ENCSR106RBR;extended_md.biosample.ids=ENCBS020XIW;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=115;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Embryonic track_name EpiMap_Enhancers Muscle ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Muscle NGEPM73SDSUEPI • EpiMap Enhancers33536621 ChromHMM Muscle Enhancer Show metadata Download track Track metadata identifier NGEPM73SDSUEPI data_source EpiMap_Enhancers Download track Download number_of_intervals 125,422 bp_covered 89,528,200 output_type enhancer chromatin states genome_build hg38 cell_type Muscle biosample_type Tissue biosample_term_id NCIT:C13056 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,183,202 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01331_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 a78df06aaeb1e876fed83adb9288f987 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01331_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01331_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01331_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01331_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01331_18_CALLS_segments.bed.gz raw_file_md5 9edc869cb228b891497d0719b9d399b3 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=muscle of trunk female embryo (113 days);tissue_of_origin=Trunk;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01331;extended_md.donor.ids=ENCDO676JUB;extended_md.collated.donors=ENCDO676JUB;extended_md.accession=ENCSR440FZS;extended_md.biosample.ids=ENCBS390NDG;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=113;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Embryonic track_name EpiMap_Enhancers Muscle ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Spleen NGEPM742KUJVBT • EpiMap33536621 ChromHMM Spleen Chromatin states Show metadata Download track Track metadata identifier NGEPM742KUJVBT data_source EpiMap Download track Download number_of_intervals 499,413 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Spleen biosample_type Tissue biosample_term_id UBERON:0002106 tissue_category Immune Organ encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,854,614 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01630_ENCODE_All_hg38.bed.gz processed_file_md5 5b117132fd4c750ca248b8443f197972 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01630_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01630_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01630_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01630_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01630_18_CALLS_segments.bed.gz raw_file_md5 feee07db98943c8873473a448202e801 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=spleen female adult (53 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01630;extended_md.donor.ids=ENCDO793LXB;extended_md.collated.donors=ENCDO793LXB;extended_md.accession=ENCSR161FEJ,ENCSR589TCU,ENCSR105URN,ENCSR726HTS,ENCSR659RJP,ENCSR197QDK;extended_md.biosample.ids=ENCBS913XPU;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=53;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name EpiMap Spleen ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Common myeloid progenitor cell NGEPM74XXKBLKS • EpiMap Enhancers33536621 ChromHMM Common myeloid progenitor cell Enhancer Show metadata Download track Track metadata identifier NGEPM74XXKBLKS data_source EpiMap_Enhancers Download track Download number_of_intervals 161,273 bp_covered 146,559,000 output_type enhancer chromatin states genome_build hg38 cell_type Common myeloid progenitor cell biosample_type Primary cell biosample_term_id NCIT:C12552 tissue_category Umbilical Cord encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,509,559 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00231_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 ae73e5e967b34f898c6beee19e8bf796 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00231_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00231_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00231_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00231_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00231_18_CALLS_segments.bed.gz raw_file_md5 6348604b4e7d54a0f3c7dfe52120f78e data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=common myeloid progenitorCD34+ female adult (27 years);tissue_of_origin=Cord blood;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00231;extended_md.donor.ids=ENCDO707VTH,ENCDO707VTH,ENCDO410ZKA,ENCDO410ZKA;extended_md.collated.donors=ENCDO707VTH,ENCDO410ZKA,ENCDO707VTH;extended_md.accession=ENCSR891KSP,ENCSR340SGE,ENCSR731OMG,ENCSR681HMF,ENCSR122VUW,ENCSR862NIZ,ENCSR734ESI;extended_md.biosample.ids=ENCBS678CIT,ENCBS395HXI,ENCBS395HXI,ENCBS238NAP,ENCBS162BYU,ENCBS238NAP,ENCBS678CIT,ENCBS162BYU;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=27;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Embryo life_stage Adult track_name EpiMap_Enhancers Common myeloid progenitor cell ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Right ventricle NGEPM75VMOSIK7 • EpiMap Enhancers33536621 ChromHMM Right ventricle Enhancer Show metadata Download track Track metadata identifier NGEPM75VMOSIK7 data_source EpiMap_Enhancers Download track Download number_of_intervals 95,317 bp_covered 68,577,200 output_type enhancer chromatin states genome_build hg38 cell_type Right ventricle biosample_type Tissue biosample_term_id UBERON:0002080 tissue_category Heart encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 900,314 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00523_ENCODE_Enh_hg38.bed.gz processed_file_md5 9c650cf497eb25e2a2a87ed9d40a6943 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00523_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00523_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00523_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00523_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00523_18_CALLS_segments.bed.gz raw_file_md5 437dc02ae7bcb4841f6303cb1f9d2b6f data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=heart right ventricle female embryo (101 day) and female embryo (103 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00523;extended_md.donor.ids=ENCDO293DRY,ENCDO060OTP;extended_md.collated.donors=ENCDO293DRY,ENCDO060OTP;extended_md.accession=ENCSR746RDJ;extended_md.biosample.ids=ENCBS226NUR,ENCBS694BHU;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=103101;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=UBERON:0002080;is_hg38_lifted=no system_category Cardiovascular life_stage Embryonic track_name EpiMap_Enhancers Right ventricle ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • HS-27A NGEPM75ZZTPWT6 • EpiMap Enhancers33536621 ChromHMM HS-27A Enhancer Show metadata Download track Track metadata identifier NGEPM75ZZTPWT6 data_source EpiMap_Enhancers Download track Download number_of_intervals 122,312 bp_covered 87,265,800 output_type enhancer chromatin states genome_build hg38 cell_type HS-27A biosample_type Cell line biosample_term_id EFO:0005283 tissue_category Bone encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,140,519 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00704_ENCODE_Enh_hg38.bed.gz processed_file_md5 86c4f047c7b0c1faa5212a4075f8e9e3 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00704_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00704_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00704_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00704_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00704_18_CALLS_segments.bed.gz raw_file_md5 564a6536d3c402bd5f0f1f69e85b7e07 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=HS-27A;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00704;extended_md.donor.ids=ENCDO000AAT;extended_md.collated.donors=ENCDO000AAT;extended_md.accession=ENCSR000EMF;extended_md.biosample.ids=ENCBS009ENC;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0005283;is_hg38_lifted=no system_category Skeletal life_stage Adult track_name EpiMap_Enhancers HS-27A ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]