consolidated • Adipose NGEPM7XQVOUODX • EpiMap Enhancers33536621 ChromHMM Adipose Enhancer Show metadata Download track Track metadata identifier NGEPM7XQVOUODX data_source EpiMap_Enhancers Download track Download number_of_intervals 31,198 bp_covered 19,948,400 output_type enhancer chromatin states genome_build hg38 cell_type Adipose biosample_type Tissue biosample_term_id NCIT:C12472 tissue_category Adipose encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 308,590 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00043_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 d25b1bf1a6bbbb3054bf10fab22a6154 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00043_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00043_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00043_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00043_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00043_18_CALLS_segments.bed.gz raw_file_md5 94f55a17e19f66e2bfb1f738cb47f5f4 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=adipose tissue male adult (34 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00043;extended_md.donor.ids=ENCDO058AAA;extended_md.collated.donors=ENCDO058AAA;extended_md.accession=ENCSR082SHT;extended_md.biosample.ids=ENCBS628VEX;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=34;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name EpiMap_Enhancers Adipose ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Heart NGEPM7XYY6GTSB • EpiMap33536621 ChromHMM Heart Chromatin states Show metadata Download track Track metadata identifier NGEPM7XYY6GTSB data_source EpiMap Download track Download number_of_intervals 390,207 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Heart biosample_type Tissue biosample_term_id NCIT:C12727 tissue_category Heart encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,812,425 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00496_Roadmap_2021_All_hg38.bed.gz processed_file_md5 bf3c4807adeb2de4a4d2ca384d48ba15 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00496_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00496_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00496_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00496_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00496_18_CALLS_segments.bed.gz raw_file_md5 6defbf0734d3ba7113ce558291594f42 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=heart embryo (96 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00496;extended_md.donor.ids=ENCDO226BUZ;extended_md.collated.donors=ENCDO226BUZ;extended_md.accession=ENCSR911LTI;extended_md.biosample.ids=ENCBS114OIZ;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=96;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Embryonic track_name EpiMap Heart ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Liver NGEPM7YNJ7PUV5 • EpiMap Enhancers33536621 ChromHMM Liver Enhancer Show metadata Download track Track metadata identifier NGEPM7YNJ7PUV5 data_source EpiMap_Enhancers Download track Download number_of_intervals 73,628 bp_covered 46,872,800 output_type enhancer chromatin states genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 699,064 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01169_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 ab7366eaabc609753455c0496e79051f wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01169_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01169_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01169_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01169_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01169_18_CALLS_segments.bed.gz raw_file_md5 b7abed8979cae8de407271d7792ae56f data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=liver male adult (32 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01169;extended_md.donor.ids=ENCDO060AAA;extended_md.collated.donors=ENCDO060AAA;extended_md.accession=ENCSR666FYM,ENCSR795VEN,ENCSR892MHG,ENCSR218ZMU,ENCSR563YGF;extended_md.biosample.ids=ENCBS046RNA;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=32;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Adult track_name EpiMap_Enhancers Liver ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Muscle NGEPM7YQN37TOL • EpiMap33536621 ChromHMM Muscle Chromatin states Show metadata Download track Track metadata identifier NGEPM7YQN37TOL data_source EpiMap Download track Download number_of_intervals 334,819 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Muscle biosample_type Tissue biosample_term_id NCIT:C13056 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,284,365 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01328_Roadmap_2015_All_hg38.bed.gz processed_file_md5 6664b4dde4c2ab5f9d468872a55d2fb3 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01328_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01328_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01328_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01328_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01328_18_CALLS_segments.bed.gz raw_file_md5 60953d5fbe309194edbd981c3bdb3ce8 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=muscle of leg male embryo (127 days);tissue_of_origin=Leg;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01328;extended_md.donor.ids=ENCDO859GXV;extended_md.collated.donors=ENCDO859GXV;extended_md.accession=ENCSR622CAH;extended_md.biosample.ids=ENCBS611ZBY;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=127;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Embryonic track_name EpiMap Muscle ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • UCSF-4 NGEPM7YSAVINYW • EpiMap Enhancers33536621 ChromHMM UCSF-4 Enhancer Show metadata Download track Track metadata identifier NGEPM7YSAVINYW data_source EpiMap_Enhancers Download track Download number_of_intervals 140,948 bp_covered 99,665,600 output_type enhancer chromatin states genome_build hg38 cell_type UCSF-4 biosample_type Stem cell biosample_term_id EFO:0007116 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,316,166 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01866_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 a509d528d1693b769373353ee3756c5a wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01866_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01866_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01866_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01866_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01866_18_CALLS_segments.bed.gz raw_file_md5 c4f2828cec5c695c7021ca5db817d076 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=UCSF-4;tissue_of_origin=Embryo;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01866;extended_md.donor.ids=ENCDO499GAU;extended_md.collated.donors=ENCDO499GAU;extended_md.accession=ENCSR734QPK,ENCSR615YKN,ENCSR595KPI,ENCSR550GSE,ENCSR656PGJ,ENCSR485ZKB;extended_md.biosample.ids=ENCBS838AWQ,ENCBS488VWE,ENCBS488VWE,ENCBS497PCQ,ENCBS838AWQ;extended_md.assay=ChIP-seq;extended_md.life.stage=embryonic;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0007116;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name EpiMap_Enhancers UCSF-4 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Aorta NGEPM7ZUXFD5QE • EpiMap33536621 ChromHMM Aorta Chromatin states Show metadata Download track Track metadata identifier NGEPM7ZUXFD5QE data_source EpiMap Download track Download number_of_intervals 357,429 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Aorta biosample_type Tissue biosample_term_id UBERON:0000947 tissue_category Blood Vessel encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,458,193 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00088_ENCODE_All_hg38.bed.gz processed_file_md5 ff84dd60e0a8b2a03de201ea5320f216 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00088_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00088_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00088_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00088_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00088_18_CALLS_segments.bed.gz raw_file_md5 0387cec6cc83bf92981a188b53c5b920 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=ascending aorta female adult (53 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00088;extended_md.donor.ids=ENCDO793LXB;extended_md.collated.donors=ENCDO793LXB;extended_md.accession=ENCSR069UMW,ENCSR723IKM,ENCSR122LOZ,ENCSR707AEW,ENCSR248PES,ENCSR589GII;extended_md.biosample.ids=ENCBS328HPC,ENCBS801NKM;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=53;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap Aorta ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • T-helper 1 cell NGEPM7ZW6BPTBE • EpiMap Enhancers33536621 ChromHMM T-helper 1 cell Enhancer Show metadata Download track Track metadata identifier NGEPM7ZW6BPTBE data_source EpiMap_Enhancers Download track Download number_of_intervals 105,368 bp_covered 82,542,800 output_type enhancer chromatin states genome_build hg38 cell_type T-helper 1 cell biosample_type Primary cell biosample_term_id CL:0000545 tissue_category Immune encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 998,312 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01692_ENCODE_Enh_hg38.bed.gz processed_file_md5 1f261c2d46029e63c31e9451880a3896 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01692_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01692_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01692_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01692_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01692_18_CALLS_segments.bed.gz raw_file_md5 48484a9f8b6a94e913db9bed6972b8fe data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=T-helper 1 cell male adult (33 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01692;extended_md.donor.ids=ENCDO286AAA;extended_md.collated.donors=ENCDO286AAA;extended_md.accession=ENCSR000EQE;extended_md.biosample.ids=ENCBS151AAA,ENCBS264SFF;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=33;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name EpiMap_Enhancers T-helper 1 cell ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Skeletal muscle tissue NGEPMA2RK7KY6V • EpiMap Enhancers33536621 ChromHMM Skeletal muscle tissue Enhancer Show metadata Download track Track metadata identifier NGEPMA2RK7KY6V data_source EpiMap_Enhancers Download track Download number_of_intervals 187,645 bp_covered 134,899,000 output_type enhancer chromatin states genome_build hg38 cell_type Skeletal muscle tissue biosample_type Tissue biosample_term_id UBERON:0001134 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,735,165 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01581_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 9b3cffdd9861c70fa8756a37144d0a24 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01581_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01581_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01581_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01581_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01581_18_CALLS_segments.bed.gz raw_file_md5 6bba9c2e9e4ed2f7d7b479b8c2c48418 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=skeletal muscle tissue male adult (54 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01581;extended_md.donor.ids=ENCDO499UKB;extended_md.collated.donors=ENCDO499UKB;extended_md.accession=ENCSR344VNY,ENCSR591FTM,ENCSR925WMT,ENCSR346KKE,ENCSR666TSJ,ENCSR668NXG;extended_md.biosample.ids=ENCBS252PSC;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=54;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Adult track_name EpiMap_Enhancers Skeletal muscle tissue ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Kidney NGEPMA34P4GWJP • EpiMap Enhancers33536621 ChromHMM Kidney Enhancer Show metadata Download track Track metadata identifier NGEPMA34P4GWJP data_source EpiMap_Enhancers Download track Download number_of_intervals 80,832 bp_covered 55,058,800 output_type enhancer chromatin states genome_build hg38 cell_type Kidney biosample_type Tissue biosample_term_id UBERON:0002113 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 772,248 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01514_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 b34428f7a2dcdd8fdbef5e2e0db5e3ce wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01514_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01514_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01514_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01514_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01514_18_CALLS_segments.bed.gz raw_file_md5 18f552a0206ac9462f043e2deadaa531 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=right kidney male embryo (108 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01514;extended_md.donor.ids=ENCDO119ASK;extended_md.collated.donors=ENCDO119ASK;extended_md.accession=ENCSR414ZUA;extended_md.biosample.ids=ENCBS566FDC;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=108;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap_Enhancers Kidney ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Midbrain NGEPMA3ALRDGR3 • EpiMap33536621 ChromHMM Midbrain Chromatin states Show metadata Download track Track metadata identifier NGEPMA3ALRDGR3 data_source EpiMap Download track Download number_of_intervals 433,197 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Midbrain biosample_type Tissue biosample_term_id UBERON:0001891 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,235,158 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01270_ENCODE_All_hg38.bed.gz processed_file_md5 2cb5cc1ee03bf658319d33c5e5e0906b wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01270_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01270_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01270_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01270_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01270_18_CALLS_segments.bed.gz raw_file_md5 8e0d5cf60ac29f32a2793545edfb8541 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=midbrain male adult (78 years) and male adult (84 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01270;extended_md.donor.ids=ENCDO240JUB,ENCDO317XRR;extended_md.collated.donors=ENCDO240JUB,ENCDO317XRR;extended_md.accession=ENCSR706IDL;extended_md.biosample.ids=ENCBS278TPS,ENCBS804RUL;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=84,78;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=UBERON:0001891;is_hg38_lifted=no system_category Nervous life_stage Adult track_name EpiMap Midbrain ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • ACC112 NGEPMA3CHYSIRW • EpiMap Enhancers33536621 ChromHMM ACC112 Enhancer Show metadata Download track Track metadata identifier NGEPMA3CHYSIRW data_source EpiMap_Enhancers Download track Download number_of_intervals 211,931 bp_covered 141,481,400 output_type enhancer chromatin states genome_build hg38 cell_type ACC112 biosample_type Cell line biosample_term_id EFO:0007070 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,923,727 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00036_ENCODE_Enh_hg38.bed.gz processed_file_md5 ee63f7b936a5375a78ea055e2ae7781a wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00036_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00036_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00036_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00036_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00036_18_CALLS_segments.bed.gz raw_file_md5 a34453ea90ed44929dee4b686c100206 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=ACC112;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00036;extended_md.donor.ids=ENCDO085ZKK;extended_md.collated.donors=ENCDO085ZKK;extended_md.accession=ENCSR475NLR,ENCSR311DQO,ENCSR726ZZX,ENCSR059MVB,ENCSR741GJT,ENCSR778VGY,ENCSR897FOZ;extended_md.biosample.ids=ENCBS827JIC,ENCBS726UUU,ENCBS726UUU,ENCBS827JIC,ENCBS827JIC;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=70;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0007070;is_hg38_lifted=no system_category Digestive life_stage Adult track_name EpiMap_Enhancers ACC112 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Thymus NGEPMA3EIUQWRN • EpiMap Enhancers33536621 ChromHMM Thymus Enhancer Show metadata Download track Track metadata identifier NGEPMA3EIUQWRN data_source EpiMap_Enhancers Download track Download number_of_intervals 151,988 bp_covered 123,232,200 output_type enhancer chromatin states genome_build hg38 cell_type Thymus biosample_type Tissue biosample_term_id UBERON:0002370 tissue_category Immune Organ encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,435,455 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01820_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 ce9ca11cedc7e7f38cf3397200f54cdc wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01820_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01820_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01820_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01820_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01820_18_CALLS_segments.bed.gz raw_file_md5 ff679a776062587474dabd64182e3c49 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=thymus female embryo (110 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01820;extended_md.donor.ids=ENCDO711IWZ;extended_md.collated.donors=ENCDO711IWZ;extended_md.accession=ENCSR479YCJ,ENCSR406VUH,ENCSR308ZMD,ENCSR645QZT,ENCSR776KLS,ENCSR381XDC;extended_md.biosample.ids=ENCBS972VPQ;extended_md.assay=ChIP-seq;extended_md.life.stage=embryonic;extended_md.age=110;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Lymphatic life_stage Embryonic track_name EpiMap_Enhancers Thymus ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Epithelial cell NGEPMA4PLCMGES • EpiMap Enhancers33536621 ChromHMM Epithelial cell Enhancer Show metadata Download track Track metadata identifier NGEPMA4PLCMGES data_source EpiMap_Enhancers Download track Download number_of_intervals 104,812 bp_covered 75,429,000 output_type enhancer chromatin states genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 981,029 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00389_ENCODE_Enh_hg38.bed.gz processed_file_md5 b29bc7b75f503ffe2a67aeafb3d601bc wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00389_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00389_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00389_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00389_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00389_18_CALLS_segments.bed.gz raw_file_md5 64b69b7c7770a9106df812e88d3ab0d9 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=glomerular visceral epithelial cell child (3 years);tissue_of_origin=Glomerular visceral;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00389;extended_md.donor.ids=ENCDO879VOF;extended_md.collated.donors=ENCDO879VOF;extended_md.accession=ENCSR432SZT,ENCSR785BDQ;extended_md.biosample.ids=ENCBS826RSQ,ENCBS117LCZ,ENCBS094MGI,ENCBS995QIF;extended_md.assay=DNase-seq;extended_md.life.stage=child;extended_md.age=3;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Child track_name EpiMap_Enhancers Epithelial cell ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Child] [Enhancer]
consolidated • T47D NGEPMA543XXRFQ • EpiMap Enhancers33536621 ChromHMM T47D Enhancer Show metadata Download track Track metadata identifier NGEPMA543XXRFQ data_source EpiMap_Enhancers Download track Download number_of_intervals 127,413 bp_covered 102,440,800 output_type enhancer chromatin states genome_build hg38 cell_type T47D biosample_type Cell line biosample_term_id EFO:0001247 tissue_category Breast encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,183,110 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01705_ENCODE_Enh_hg38.bed.gz processed_file_md5 2d15a33b17927acd84c7be569d3ab219 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01705_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01705_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01705_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01705_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01705_18_CALLS_segments.bed.gz raw_file_md5 261ee2b3dc1371032da1d174a330ffbb data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=T47D treated with 10 nM 17?-estradiol for 30 minutes;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01705;extended_md.donor.ids=ENCDO000ABA;extended_md.collated.donors=ENCDO000ABA;extended_md.accession=ENCSR000ELS;extended_md.biosample.ids=ENCBS442ENC;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=54;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0001247;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap_Enhancers T47D ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Gastrocnemius medialis NGEPMA56EFU2U2 • EpiMap33536621 ChromHMM Gastrocnemius medialis Chromatin states Show metadata Download track Track metadata identifier NGEPMA56EFU2U2 data_source EpiMap Download track Download number_of_intervals 284,480 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Gastrocnemius medialis biosample_type Tissue biosample_term_id UBERON:0011907 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 2,773,280 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00376_ENCODE_All_hg38.bed.gz processed_file_md5 12c477127002ff80c9c5cf2593b4784f wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00376_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00376_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00376_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00376_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00376_18_CALLS_segments.bed.gz raw_file_md5 44ff1c7947c051f39961035409b3d45a data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=gastrocnemius medialis female adult (51 year);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00376;extended_md.donor.ids=ENCDO271OUW;extended_md.collated.donors=ENCDO271OUW;extended_md.accession=ENCSR823ZCR,ENCSR236SFP;extended_md.biosample.ids=ENCBS668EWD,ENCBS818YGW;extended_md.assay=ATAC-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=51;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=UBERON:0011907;is_hg38_lifted=no system_category Muscular life_stage Adult track_name EpiMap Gastrocnemius medialis ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Muscle NGEPMA6H2VXPCO • EpiMap33536621 ChromHMM Muscle Chromatin states Show metadata Download track Track metadata identifier NGEPMA6H2VXPCO data_source EpiMap Download track Download number_of_intervals 391,733 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Muscle biosample_type Tissue biosample_term_id NCIT:C13056 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,842,309 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01322_Roadmap_2021_All_hg38.bed.gz processed_file_md5 596cc73b87d0a5f23dc37dbd4cb87d1a wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01322_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01322_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01322_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01322_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01322_18_CALLS_segments.bed.gz raw_file_md5 46a7aafea3f781cefcff9236e777b9cf data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=muscle of leg female embryo (85 days);tissue_of_origin=Leg;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01322;extended_md.donor.ids=ENCDO527XLA;extended_md.collated.donors=ENCDO527XLA;extended_md.accession=ENCSR198JXW;extended_md.biosample.ids=ENCBS868UBY;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=85;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Embryonic track_name EpiMap Muscle ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Epithelium NGEPMA6VHPNMIT • EpiMap33536621 ChromHMM Epithelium Chromatin states Show metadata Download track Track metadata identifier NGEPMA6VHPNMIT data_source EpiMap Download track Download number_of_intervals 323,631 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Epithelium biosample_type Tissue biosample_term_id NCIT:C12710 tissue_category Breast encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,095,415 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00146_ENCODE_All_hg38.bed.gz processed_file_md5 d12a564a6bf422ecb4d9d2f41d594fce wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00146_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00146_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00146_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00146_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00146_18_CALLS_segments.bed.gz raw_file_md5 a439b6a8dd352ea8629972dbae098cf9 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=breast epithelium female adult (53 years);tissue_of_origin=Breast;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00146;extended_md.donor.ids=ENCDO793LXB;extended_md.collated.donors=ENCDO793LXB;extended_md.accession=ENCSR416AUW,ENCSR654UYP,ENCSR553IAW,ENCSR403UOU,ENCSR770WSE,ENCSR034ZKE,ENCSR543YQF;extended_md.biosample.ids=ENCBS114DQJ,ENCBS433LAO;extended_md.assay=ChIP-seq,ATAC-seq;extended_md.life.stage=adult;extended_md.age=53;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap Epithelium ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Retina NGEPMA7DIKRE33 • EpiMap Enhancers33536621 ChromHMM Retina Enhancer Show metadata Download track Track metadata identifier NGEPMA7DIKRE33 data_source EpiMap_Enhancers Download track Download number_of_intervals 67,497 bp_covered 42,762,400 output_type enhancer chromatin states genome_build hg38 cell_type Retina biosample_type Tissue biosample_term_id UBERON:0000966 tissue_category Eye encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 655,940 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01504_ENCODE_Enh_hg38.bed.gz processed_file_md5 342262506dd930bf8755972de6846ea5 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01504_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01504_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01504_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01504_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01504_18_CALLS_segments.bed.gz raw_file_md5 dce20b1b0ab849c367b773aabc94d690 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=retina female embryo (89 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01504;extended_md.donor.ids=ENCDO685SWK;extended_md.collated.donors=ENCDO685SWK;extended_md.accession=ENCSR820ICX;extended_md.biosample.ids=ENCBS941TEO;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=89;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Sensory life_stage Embryonic track_name EpiMap_Enhancers Retina ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • A549 NGEPMA7OGM7CVE • EpiMap33536621 ChromHMM A549 Chromatin states Show metadata Download track Track metadata identifier NGEPMA7OGM7CVE data_source EpiMap Download track Download number_of_intervals 388,769 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,784,320 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00025_GGR_All_hg38.bed.gz processed_file_md5 e52dd6aac82146378295355c614c26c1 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00025_GGR_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00025_GGR_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00025_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00025_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00025_18_CALLS_segments.bed.gz raw_file_md5 8321233466e4bef201389dca15dc35ed data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=A549 treated with 100 nM dexamethasone for 4 hours;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00025;extended_md.donor.ids=ENCDO000AAZ;extended_md.collated.donors=ENCDO000AAZ;extended_md.accession=ENCSR543ZVZ,ENCSR834LCU,ENCSR599WJC,ENCSR037DAC,ENCSR949IDI,ENCSR901AAW,ENCSR288YMH;extended_md.biosample.ids=ENCBS381CYW,ENCBS820MUM,ENCBS025UWS,ENCBS307KAV,ENCBS181LVW,ENCBS059RHT,ENCBS360YMB,ENCBS015HRP,ENCBS402NSI,ENCBS615RCL,ENCBS018TOF,ENCBS538GZG,ENCBS023FRY,ENCBS006KFZ,ENCBS938EZW,ENCBS478XMC,ENCBS473OMG,ENCBS969VAO,ENCBS029TTL,ENCBS213WGX;extended_md.assay=ChIP-seq,ATAC-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=58;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name EpiMap A549 ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Ishikawa NGEPMA7SK3MAIN • EpiMap33536621 ChromHMM Ishikawa Chromatin states Show metadata Download track Track metadata identifier NGEPMA7SK3MAIN data_source EpiMap Download track Download number_of_intervals 424,618 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Ishikawa biosample_type Cell line biosample_term_id EFO:0005718 tissue_category Female Reproductive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,159,636 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00745_ENCODE_All_hg38.bed.gz processed_file_md5 02520d89aefb136f264727983cf6e38c wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00745_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00745_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00745_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00745_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00745_18_CALLS_segments.bed.gz raw_file_md5 cd17904d647b465a526158160abf9de8 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=Ishikawa treated with 0.02% dimethyl sulfoxide for 1 hour;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00745;extended_md.donor.ids=ENCDO000ACV;extended_md.collated.donors=ENCDO000ACV;extended_md.accession=ENCSR000EIP;extended_md.biosample.ids=ENCBS862NRL;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=39;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0005718;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap Ishikawa ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]