consolidated • Layer - hippocampus NGEPMAJB6BRBBZ • EpiMap33536621 ChromHMM Layer - hippocampus Chromatin states Show metadata Download track Track metadata identifier NGEPMAJB6BRBBZ data_source EpiMap Download track Download number_of_intervals 447,882 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Layer - hippocampus biosample_type Tissue biosample_term_id UBERON:0002305 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,333,864 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01126_Roadmap_2015_All_hg38.bed.gz processed_file_md5 2e51d3fcdbcc6ba7fa19611277a06049 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01126_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01126_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01126_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01126_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01126_18_CALLS_segments.bed.gz raw_file_md5 5df14189daa1c77fe03ad3576d9aacae data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=layer of hippocampus male adult (81 year);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01126;extended_md.donor.ids=ENCDO980BZD;extended_md.collated.donors=ENCDO980BZD;extended_md.accession=ENCSR953HJN,ENCSR040TUS,ENCSR126FJY,ENCSR912TVO,ENCSR956CFX,ENCSR713HJS;extended_md.biosample.ids=ENCBS393JAH;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=81;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=UBERON:0002305;is_hg38_lifted=no system_category Nervous life_stage Adult track_name EpiMap Layer - hippocampus ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Jurkat clone E61 NGEPMAJFAIODVV • EpiMap33536621 ChromHMM Jurkat clone E61 Chromatin states Show metadata Download track Track metadata identifier NGEPMAJFAIODVV data_source EpiMap Download track Download number_of_intervals 456,261 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Jurkat clone E61 biosample_type Cell line biosample_term_id CLO:0007045 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,458,204 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00760_ENCODE_All_hg38.bed.gz processed_file_md5 31200ba0638c33af643218879e0dd697 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00760_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00760_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00760_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00760_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00760_18_CALLS_segments.bed.gz raw_file_md5 34dd8a059a5f59a6e82fd063728cb0ce data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=Jurkat clone E61;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00760;extended_md.donor.ids=ENCDO000AAY;extended_md.collated.donors=ENCDO000AAY;extended_md.accession=ENCSR000DVU,ENCSR000EOS;extended_md.biosample.ids=ENCBS550BVM,ENCBS551ZKL,ENCBS407ENC;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=child;extended_md.age=14;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Child track_name EpiMap Jurkat clone E61 ChromHMM consolidated chromatin states (bed9) [Life stage: Child] [Chromatin states]
consolidated • Muscle NGEPMAJVBS5PFM • EpiMap Enhancers33536621 ChromHMM Muscle Enhancer Show metadata Download track Track metadata identifier NGEPMAJVBS5PFM data_source EpiMap_Enhancers Download track Download number_of_intervals 80,903 bp_covered 56,148,400 output_type enhancer chromatin states genome_build hg38 cell_type Muscle biosample_type Tissue biosample_term_id NCIT:C13056 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 769,100 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01334_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 c3613c95bc77d9f8298a6d1a1b507dcf wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01334_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01334_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01334_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01334_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01334_18_CALLS_segments.bed.gz raw_file_md5 ad510c17591e94bc64886fcb4eb10ba1 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=muscle of trunk female embryo (121 day);tissue_of_origin=Trunk;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01334;extended_md.donor.ids=ENCDO920LST;extended_md.collated.donors=ENCDO920LST;extended_md.accession=ENCSR411MGY;extended_md.biosample.ids=ENCBS147SIF;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=121;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Embryonic track_name EpiMap_Enhancers Muscle ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • H9 NGEPMAK5YMKOW3 • EpiMap Enhancers33536621 ChromHMM H9 Enhancer Show metadata Download track Track metadata identifier NGEPMAK5YMKOW3 data_source EpiMap_Enhancers Download track Download number_of_intervals 144,317 bp_covered 82,113,400 output_type enhancer chromatin states genome_build hg38 cell_type H9 biosample_type Stem cell biosample_term_id EFO:0003045 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,354,566 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00484_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 b6ede8a53cf689ee07329224ddf53d5d wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00484_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00484_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00484_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00484_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00484_18_CALLS_segments.bed.gz raw_file_md5 955fc7d2f2240c6a5ca77651346d88ad data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=H9;tissue_of_origin=Embryo;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00484;extended_md.donor.ids=ENCDO222AAA;extended_md.collated.donors=ENCDO222AAA;extended_md.accession=ENCSR554TZE,ENCSR792GCH,ENCSR276HBK,ENCSR879TAS,ENCSR047TJL,ENCSR333LVY,ENCSR915BSC,ENCSR230WNU,ENCSR000EJP,ENCSR440BZV,ENCSR729NVN,ENCSR734NCK,ENCSR367JIO,ENCSR972SMV,ENCSR294WUR,ENCSR282SNG,ENCSR043VGU,ENCSR846DXV,ENCSR063WYJ,ENCSR324UNL,ENCSR957GYL,ENCSR386WCR,ENCSR260OWP,ENCSR275ICP,ENCSR188GJE,ENCSR741FIA,ENCSR280IFJ,ENCSR876RGF,ENCSR265EDV,ENCSR730POX,ENCSR738BJJ;extended_md.biosample.ids=ENCBS399JWQ,ENCBS298AAA,ENCBS277KDR,ENCBS485PGF,ENCBS113LZP,ENCBS399JWQ,ENCBS808UWK,ENCBS656LSW,ENCBS277KDR,ENCBS532LWE,ENCBS532LWE,ENCBS808UWK,ENCBS399JWQ;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=embryonic;extended_md.age=5;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0003045;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name EpiMap_Enhancers H9 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Thymus NGEPMALXHYT57S • EpiMap Enhancers33536621 ChromHMM Thymus Enhancer Show metadata Download track Track metadata identifier NGEPMALXHYT57S data_source EpiMap_Enhancers Download track Download number_of_intervals 105,131 bp_covered 75,367,000 output_type enhancer chromatin states genome_build hg38 cell_type Thymus biosample_type Tissue biosample_term_id UBERON:0002370 tissue_category Immune Organ encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,003,695 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01825_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 33857ef4f4eb501c0558fd58fc8dee30 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01825_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01825_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01825_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01825_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01825_18_CALLS_segments.bed.gz raw_file_md5 610b768fed5b77247a9321b88504878c data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=thymus male child (3 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01825;extended_md.donor.ids=ENCDO478OMA;extended_md.collated.donors=ENCDO478OMA;extended_md.accession=ENCSR923WPP,ENCSR303IKJ,ENCSR738LBP,ENCSR762ZLM,ENCSR298PMB,ENCSR952EID;extended_md.biosample.ids=ENCBS672KLQ;extended_md.assay=ChIP-seq;extended_md.life.stage=child;extended_md.age=3;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Lymphatic life_stage Child track_name EpiMap_Enhancers Thymus ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Child] [Enhancer]
consolidated • Urinary bladder NGEPMAM2VGF4L7 • EpiMap Enhancers33536621 ChromHMM Urinary bladder Enhancer Show metadata Download track Track metadata identifier NGEPMAM2VGF4L7 data_source EpiMap_Enhancers Download track Download number_of_intervals 55,940 bp_covered 36,834,200 output_type enhancer chromatin states genome_build hg38 cell_type Urinary bladder biosample_type Tissue biosample_term_id UBERON:0001255 tissue_category Urinary encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 539,010 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01876_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 4022fc4e549b10e886e457e843fba6dd wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01876_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01876_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01876_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01876_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01876_18_CALLS_segments.bed.gz raw_file_md5 92a1a305f84d3c91fca939bf33496433 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=urinary bladder male adult (34 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01876;extended_md.donor.ids=ENCDO058AAA;extended_md.collated.donors=ENCDO058AAA;extended_md.accession=ENCSR632OWD,ENCSR054BKO,ENCSR449TNC,ENCSR065IQH;extended_md.biosample.ids=ENCBS364KFR;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=34;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Adult track_name EpiMap_Enhancers Urinary bladder ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • CD4+ alpha-beta T cell NGEPMAM3DBSPNI • EpiMap Enhancers33536621 ChromHMM CD4+ alpha-beta T cell Enhancer Show metadata Download track Track metadata identifier NGEPMAM3DBSPNI data_source EpiMap_Enhancers Download track Download number_of_intervals 106,458 bp_covered 110,081,400 output_type enhancer chromatin states genome_build hg38 cell_type CD4+ alpha-beta T cell biosample_type Primary cell biosample_term_id CL:0000624 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,003,306 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00186_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 87cca68b3e21184ea56af6e8f794d57f wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00186_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00186_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00186_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00186_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00186_18_CALLS_segments.bed.gz raw_file_md5 d56cc8633b31caae66964652c29e87fc data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=CD4+alpha-beta T cell;tissue_of_origin=Blood;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00186;extended_md.donor.ids=ENCDO779YRY,ENCDO194EHQ,ENCDO779YRY;extended_md.collated.donors=ENCDO779YRY,ENCDO194EHQ,ENCDO779YRY;extended_md.accession=ENCSR828WZG,ENCSR546SDM,ENCSR453GNY,ENCSR043SBG,ENCSR263WLD,ENCSR777RWW;extended_md.biosample.ids=ENCBS976AOQ,ENCBS808QXV,ENCBS976AOQ;extended_md.assay=ChIP-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name EpiMap_Enhancers CD4+ alpha-beta T cell ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]
consolidated • HeLa-S3 NGEPMANKO6KIQ3 • EpiMap33536621 ChromHMM HeLa-S3 Chromatin states Show metadata Download track Track metadata identifier NGEPMANKO6KIQ3 data_source EpiMap Download track Download number_of_intervals 441,470 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,326,683 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00541_ENCODE_All_hg38.bed.gz processed_file_md5 4c32da36fc208d30f2d4d7a7e05629c5 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00541_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00541_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00541_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00541_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00541_18_CALLS_segments.bed.gz raw_file_md5 676949bc9b97df5b3455a805fc1dc07a data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=HeLa-S3 treated with interferon alpha for 4 hours;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00541;extended_md.donor.ids=ENCDO000AAB;extended_md.collated.donors=ENCDO000AAB;extended_md.accession=ENCSR000EJS;extended_md.biosample.ids=ENCBS635AAA;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=31;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap HeLa-S3 ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Muscle NGEPMANTBSGVSF • EpiMap Enhancers33536621 ChromHMM Muscle Enhancer Show metadata Download track Track metadata identifier NGEPMANTBSGVSF data_source EpiMap_Enhancers Download track Download number_of_intervals 85,261 bp_covered 57,251,600 output_type enhancer chromatin states genome_build hg38 cell_type Muscle biosample_type Tissue biosample_term_id NCIT:C13056 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 808,127 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01333_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 c3fa9e6422dd152e520431eec5b72639 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01333_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01333_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01333_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01333_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01333_18_CALLS_segments.bed.gz raw_file_md5 517928f5a792cf78c42f36808b26eea7 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=muscle of trunk female embryo (120 days);tissue_of_origin=Trunk;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01333;extended_md.donor.ids=ENCDO555CMC;extended_md.collated.donors=ENCDO555CMC;extended_md.accession=ENCSR217YRJ;extended_md.biosample.ids=ENCBS992XAC;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=120;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Embryonic track_name EpiMap_Enhancers Muscle ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Common myeloid progenitor cell NGEPMANUWKAKBX • EpiMap Enhancers33536621 ChromHMM Common myeloid progenitor cell Enhancer Show metadata Download track Track metadata identifier NGEPMANUWKAKBX data_source EpiMap_Enhancers Download track Download number_of_intervals 105,472 bp_covered 62,258,000 output_type enhancer chromatin states genome_build hg38 cell_type Common myeloid progenitor cell biosample_type Primary cell biosample_term_id NCIT:C12552 tissue_category Umbilical Cord encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 996,222 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00237_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 b80f7bf82958e8239768d04c2e58af08 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00237_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00237_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00237_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00237_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00237_18_CALLS_segments.bed.gz raw_file_md5 c6c8870c0d8f6ef8ee162962ae542988 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=common myeloid progenitorCD34+ male adult (36 years);tissue_of_origin=Cord blood;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00237;extended_md.donor.ids=ENCDO441UHQ;extended_md.collated.donors=ENCDO441UHQ;extended_md.accession=ENCSR011QFP,ENCSR268JEO,ENCSR179MIQ,ENCSR196KYU,ENCSR453EVC,ENCSR438DSO;extended_md.biosample.ids=ENCBS304FVE,ENCBS021OJJ,ENCBS900BWQ,ENCBS602GFU,ENCBS467FEY,ENCBS444JIJ;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=36;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Embryo life_stage Adult track_name EpiMap_Enhancers Common myeloid progenitor cell ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Luminal epithelial cell NGEPMAPGDR46WM • EpiMap33536621 ChromHMM Luminal epithelial cell Chromatin states Show metadata Download track Track metadata identifier NGEPMAPGDR46WM data_source EpiMap Download track Download number_of_intervals 460,243 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Luminal epithelial cell biosample_type Primary cell biosample_term_id CL:0002326 tissue_category Breast encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,443,563 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01185_Roadmap_2021_All_hg38.bed.gz processed_file_md5 b75251f19e23266fb52f46f42510e354 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01185_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01185_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01185_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01185_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01185_18_CALLS_segments.bed.gz raw_file_md5 5386115c0ff0d41d88482f07438bf4b3 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=luminal epithelial cell of mammary gland female adult (33 years);tissue_of_origin=Mammary gland;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01185;extended_md.donor.ids=ENCDO819SJC;extended_md.collated.donors=ENCDO819SJC;extended_md.accession=ENCSR293UEB,ENCSR113OII,ENCSR212LIS,ENCSR529ECZ;extended_md.biosample.ids=ENCBS792MMK;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=33;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=CL:0002326;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap Luminal epithelial cell ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • ACHN NGEPMAPN64VHN7 • EpiMap Enhancers33536621 ChromHMM ACHN Enhancer Show metadata Download track Track metadata identifier NGEPMAPN64VHN7 data_source EpiMap_Enhancers Download track Download number_of_intervals 103,623 bp_covered 80,339,000 output_type enhancer chromatin states genome_build hg38 cell_type ACHN biosample_type Cell line biosample_term_id EFO:0002108 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 962,278 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00037_ENCODE_Enh_hg38.bed.gz processed_file_md5 2b0a913b36121148be24977ac7d24601 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00037_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00037_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00037_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00037_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00037_18_CALLS_segments.bed.gz raw_file_md5 c1152cdd63d8328899eb5d2808a3b23c data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=ACHN;tissue_of_origin=Kidney;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00037;extended_md.donor.ids=ENCDO627NDO;extended_md.collated.donors=ENCDO627NDO;extended_md.accession=ENCSR257BGZ;extended_md.biosample.ids=ENCBS569UYK,ENCBS897ZFQ;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=22;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0002108;is_hg38_lifted=no system_category Renal life_stage Adult track_name EpiMap_Enhancers ACHN ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Placenta NGEPMAPSWOQJCI • EpiMap Enhancers33536621 ChromHMM Placenta Enhancer Show metadata Download track Track metadata identifier NGEPMAPSWOQJCI data_source EpiMap_Enhancers Download track Download number_of_intervals 199,849 bp_covered 164,357,200 output_type enhancer chromatin states genome_build hg38 cell_type Placenta biosample_type Tissue biosample_term_id UBERON:0001987 tissue_category Placenta encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,825,060 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01431_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 d22228dbbac8d533e1a9f82e14a146f9 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01431_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01431_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01431_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01431_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01431_18_CALLS_segments.bed.gz raw_file_md5 fb06379c3a5e114180b2bbadeadd79e2 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=placenta embryo (16 weeks);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01431;extended_md.donor.ids=ENCDO918HJM;extended_md.collated.donors=ENCDO918HJM;extended_md.accession=ENCSR451EKU,ENCSR832LMT,ENCSR120ZZJ,ENCSR194ZHE,ENCSR512GFQ,ENCSR028QEA;extended_md.biosample.ids=ENCBS849DSQ;extended_md.assay=ChIP-seq;extended_md.life.stage=embryonic;extended_md.age=16;extended_md.age.units=week;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Placental life_stage Embryonic track_name EpiMap_Enhancers Placenta ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Trophoblast NGEPMAQ7VCGNBI • EpiMap33536621 ChromHMM Trophoblast Chromatin states Show metadata Download track Track metadata identifier NGEPMAQ7VCGNBI data_source EpiMap Download track Download number_of_intervals 353,028 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Trophoblast biosample_type Primary cell biosample_term_id UBERON:0000088 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,447,692 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01855_ENCODE_All_hg38.bed.gz processed_file_md5 f8369690eadac6bbff30d5752799406a wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01855_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01855_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01855_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01855_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01855_18_CALLS_segments.bed.gz raw_file_md5 01ac607e9ecb7c12088b7de423036b99 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=trophoblast cell embryo (23 weeks);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01855;extended_md.donor.ids=ENCDO623MQT;extended_md.collated.donors=ENCDO623MQT;extended_md.accession=ENCSR809LCE;extended_md.biosample.ids=ENCBS576QRR;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=23;extended_md.age.units=week;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name EpiMap Trophoblast ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Kidney NGEPMARAG22LUX • EpiMap33536621 ChromHMM Kidney Chromatin states Show metadata Download track Track metadata identifier NGEPMARAG22LUX data_source EpiMap Download track Download number_of_intervals 359,459 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Kidney biosample_type Tissue biosample_term_id UBERON:0002113 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,527,611 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01513_Roadmap_2021_All_hg38.bed.gz processed_file_md5 d2e4ed6c087a48e0de824a8cc0ce22f2 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01513_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01513_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01513_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01513_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01513_18_CALLS_segments.bed.gz raw_file_md5 dfa7eac034c3ffeb402f67d6c744d265 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=right kidney female embryo (98 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01513;extended_md.donor.ids=ENCDO633IHH;extended_md.collated.donors=ENCDO633IHH;extended_md.accession=ENCSR884MCZ;extended_md.biosample.ids=ENCBS836CTT;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=98;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap Kidney ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Stomach NGEPMARECYNOKS • EpiMap33536621 ChromHMM Stomach Chromatin states Show metadata Download track Track metadata identifier NGEPMARECYNOKS data_source EpiMap Download track Download number_of_intervals 369,969 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Stomach biosample_type Tissue biosample_term_id UBERON:0000945 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,617,546 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01658_Roadmap_2015_All_hg38.bed.gz processed_file_md5 ec0c1bbd3c87eec6b55f97ecc8a31bf7 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01658_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01658_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01658_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01658_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01658_18_CALLS_segments.bed.gz raw_file_md5 0e483c1cac4d150c41fc83c559b50c4f data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=stomach male embryo (91 day);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01658;extended_md.donor.ids=ENCDO375VTO;extended_md.collated.donors=ENCDO375VTO;extended_md.accession=ENCSR172PVJ;extended_md.biosample.ids=ENCBS465OGU;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=91;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name EpiMap Stomach ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Small intestine NGEPMARMABAMJP • EpiMap Enhancers33536621 ChromHMM Small intestine Enhancer Show metadata Download track Track metadata identifier NGEPMARMABAMJP data_source EpiMap_Enhancers Download track Download number_of_intervals 113,636 bp_covered 77,581,000 output_type enhancer chromatin states genome_build hg38 cell_type Small intestine biosample_type Tissue biosample_term_id UBERON:0002108 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,066,259 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01593_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 4308b208ee5af9ec9a03671948f5f597 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01593_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01593_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01593_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01593_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01593_18_CALLS_segments.bed.gz raw_file_md5 9fd2cbce300d1d07e8e24e0b46d23647 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=small intestine female embryo (110 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01593;extended_md.donor.ids=ENCDO087TLK;extended_md.collated.donors=ENCDO087TLK;extended_md.accession=ENCSR083FBK;extended_md.biosample.ids=ENCBS517YQG;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=110;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name EpiMap_Enhancers Small intestine ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Thymus NGEPMAUDCMLYZ4 • EpiMap33536621 ChromHMM Thymus Chromatin states Show metadata Download track Track metadata identifier NGEPMAUDCMLYZ4 data_source EpiMap Download track Download number_of_intervals 454,111 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Thymus biosample_type Tissue biosample_term_id UBERON:0002370 tissue_category Immune Organ encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,436,449 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01829_Roadmap_2015_All_hg38.bed.gz processed_file_md5 212dc08b264527fcdc552a0aedd8dbd9 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01829_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01829_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01829_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01829_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01829_18_CALLS_segments.bed.gz raw_file_md5 9c6f2bd85eb6e42d6145a71f3ae05716 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=thymus male embryo (127 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01829;extended_md.donor.ids=ENCDO859GXV;extended_md.collated.donors=ENCDO859GXV;extended_md.accession=ENCSR164PQJ;extended_md.biosample.ids=ENCBS054CPR;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=127;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Lymphatic life_stage Embryonic track_name EpiMap Thymus ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Fibroblast NGEPMAUJJYCRBT • EpiMap33536621 ChromHMM Fibroblast Chromatin states Show metadata Download track Track metadata identifier NGEPMAUJJYCRBT data_source EpiMap Download track Download number_of_intervals 546,553 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,281,113 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00334_ENCODE_2012_All_hg38.bed.gz processed_file_md5 9422197e144aedce984a182590c852e9 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00334_ENCODE_2012_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00334_ENCODE_2012_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00334_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00334_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00334_18_CALLS_segments.bed.gz raw_file_md5 522b11c27ee690f46be9941cb64d247b data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=fibroblast of dermis;tissue_of_origin=Dermis;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00334;extended_md.donor.ids=ENCDO759UVX;extended_md.collated.donors=ENCDO759UVX;extended_md.accession=ENCSR000APP,ENCSR000APQ,ENCSR000APS,ENCSR000ARV,ENCSR000ARW,ENCSR000ARJ,ENCSR000ARX,ENCSR000APN,ENCSR000APO;extended_md.biosample.ids=ENCBS617RCN,ENCBS311WGW,ENCBS311WGW,ENCBS068KST,ENCBS311WGW,ENCBS617RCN;extended_md.assay=ChIP-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Integumentary life_stage Unknown track_name EpiMap Fibroblast ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • T-helper 17 cell NGEPMAVU4CCWW6 • EpiMap33536621 ChromHMM T-helper 17 cell Chromatin states Show metadata Download track Track metadata identifier NGEPMAVU4CCWW6 data_source EpiMap Download track Download number_of_intervals 406,712 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type T-helper 17 cell biosample_type Primary cell biosample_term_id CL:0000899 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,951,988 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01695_Roadmap_2015_All_hg38.bed.gz processed_file_md5 c03714e7f7e24e3d8c1ccf30c41d1ff5 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01695_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01695_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01695_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01695_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01695_18_CALLS_segments.bed.gz raw_file_md5 54d18d3f5a45cf45951c0f848010f264 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=T-helper 17 cell treated with phorbol 13-acetate 12-myristate ionomycin;tissue_of_origin=Blood;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01695;extended_md.donor.ids=ENCDO194EHQ,ENCDO779YRY,ENCDO194EHQ;extended_md.collated.donors=ENCDO779YRY,ENCDO194EHQ,ENCDO194EHQ;extended_md.accession=ENCSR451GTQ,ENCSR675EXE,ENCSR998RVD,ENCSR957XEV,ENCSR041UZZ,ENCSR091TTT;extended_md.biosample.ids=ENCBS237REE,ENCBS237REE,ENCBS868LSM;extended_md.assay=ChIP-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name EpiMap T-helper 17 cell ChromHMM consolidated chromatin states (bed9) [Chromatin states]