consolidated • Stomach NGEPMCCIX6FXNZ • EpiMap Enhancers33536621 ChromHMM Stomach Enhancer Show metadata Download track Track metadata identifier NGEPMCCIX6FXNZ data_source EpiMap_Enhancers Download track Download number_of_intervals 124,351 bp_covered 78,932,600 output_type enhancer chromatin states genome_build hg38 cell_type Stomach biosample_type Tissue biosample_term_id UBERON:0000945 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,171,204 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01651_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 a01eb143c1733f2147e339dcd0588939 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01651_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01651_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01651_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01651_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01651_18_CALLS_segments.bed.gz raw_file_md5 a9859d68a5c9a076f3a42b405217ab17 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=stomach male adult (34 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01651;extended_md.donor.ids=ENCDO058AAA;extended_md.collated.donors=ENCDO058AAA;extended_md.accession=ENCSR257BCD,ENCSR782SSS,ENCSR129NCV,ENCSR552MZH,ENCSR001SHB,ENCSR639RKZ,ENCSR527BFF;extended_md.biosample.ids=ENCBS441WEO;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=34;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Adult track_name EpiMap_Enhancers Stomach ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Renal cortex interstitium NGEPMCCP5LOP6J • EpiMap33536621 ChromHMM Renal cortex interstitium Chromatin states Show metadata Download track Track metadata identifier NGEPMCCP5LOP6J data_source EpiMap Download track Download number_of_intervals 345,432 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Renal cortex interstitium biosample_type Tissue biosample_term_id UBERON:0005270 tissue_category Urinary encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,392,788 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01151_Roadmap_2021_All_hg38.bed.gz processed_file_md5 17ae463521997a02808e168c00d94287 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01151_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01151_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01151_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01151_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01151_18_CALLS_segments.bed.gz raw_file_md5 c6d8a52a7e422be6b9a06954505edf13 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=left renal cortex interstitium male embryo (120 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01151;extended_md.donor.ids=ENCDO327QNA;extended_md.collated.donors=ENCDO327QNA;extended_md.accession=ENCSR039ZVQ;extended_md.biosample.ids=ENCBS281CNH;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=120;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap Renal cortex interstitium ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Retina NGEPMCCS2YBRHI • EpiMap33536621 ChromHMM Retina Chromatin states Show metadata Download track Track metadata identifier NGEPMCCS2YBRHI data_source EpiMap Download track Download number_of_intervals 447,291 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Retina biosample_type Tissue biosample_term_id UBERON:0000966 tissue_category Eye encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,364,888 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01502_ENCODE_All_hg38.bed.gz processed_file_md5 0a1ffc107affae588c709cfe984f8f21 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01502_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01502_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01502_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01502_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01502_18_CALLS_segments.bed.gz raw_file_md5 3a30a2d7f394c1526eaceb47c8c1b0e1 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=retina embryo (125 days) and male embryo (103 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01502;extended_md.donor.ids=ENCDO225GSN,ENCDO869VTH;extended_md.collated.donors=ENCDO225GSN,ENCDO869VTH;extended_md.accession=ENCSR474GZQ;extended_md.biosample.ids=ENCBS797BYT,ENCBS704PVR;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=103125;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Sensory life_stage Embryonic track_name EpiMap Retina ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Esophagus NGEPMCDLA5FMMF • EpiMap33536621 ChromHMM Esophagus Chromatin states Show metadata Download track Track metadata identifier NGEPMCDLA5FMMF data_source EpiMap Download track Download number_of_intervals 360,804 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Esophagus biosample_type Tissue biosample_term_id NCIT:C12389 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,470,135 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00316_Roadmap_2021_All_hg38.bed.gz processed_file_md5 799457f59a9fe76c751fd4367b35c05c wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00316_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00316_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00316_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00316_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00316_18_CALLS_segments.bed.gz raw_file_md5 5ee33d4e662f16e3e6ed94944bafc7dc data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=esophagus female adult (30 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00316;extended_md.donor.ids=ENCDO424HVB;extended_md.collated.donors=ENCDO424HVB;extended_md.accession=ENCSR645SYH,ENCSR200WDD,ENCSR641RQV,ENCSR478BKA,ENCSR279MCN,ENCSR697GPO;extended_md.biosample.ids=ENCBS388UDP;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=30;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Adult track_name EpiMap Esophagus ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Spinal cord NGEPMCEP7TOAY3 • EpiMap33536621 ChromHMM Spinal cord Chromatin states Show metadata Download track Track metadata identifier NGEPMCEP7TOAY3 data_source EpiMap Download track Download number_of_intervals 487,607 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Spinal cord biosample_type Tissue biosample_term_id UBERON:0002240 tissue_category Nervous encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,763,314 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01614_Roadmap_2021_All_hg38.bed.gz processed_file_md5 4a03196b42477cb7ee697b05071272fa wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01614_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01614_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01614_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01614_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01614_18_CALLS_segments.bed.gz raw_file_md5 7dd9653ae76f3d15318f5a15c94e2f2a data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=spinal cord female embryo (113 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01614;extended_md.donor.ids=ENCDO676JUB,ENCDO022PVU;extended_md.collated.donors=ENCDO022PVU,ENCDO676JUB;extended_md.accession=ENCSR083RXV,ENCSR678PDD,ENCSR036HAT;extended_md.biosample.ids=ENCBS103RPT,ENCBS419ZMB;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=embryonic;extended_md.age=113;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Nervous life_stage Embryonic track_name EpiMap Spinal cord ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Kidney tubule cell NGEPMCGNU7BK3I • EpiMap33536621 ChromHMM Kidney tubule cell Chromatin states Show metadata Download track Track metadata identifier NGEPMCGNU7BK3I data_source EpiMap Download track Download number_of_intervals 459,121 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Kidney tubule cell biosample_type Primary cell biosample_term_id CL:1000507 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,479,278 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01103_ENCODE_All_hg38.bed.gz processed_file_md5 7b3430bd49348a0b6ee71192463dd0fd wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01103_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01103_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01103_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01103_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01103_18_CALLS_segments.bed.gz raw_file_md5 76c3d38d706f4fe4adfe662d43c546e1 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=kidney tubule cell female adult (80 years) treated with 5 ?M cisplatin;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01103;extended_md.donor.ids=ENCDO421EJG;extended_md.collated.donors=ENCDO421EJG;extended_md.accession=ENCSR257CIZ;extended_md.biosample.ids=ENCBS529BVK;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=80;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=CL:1000507;is_hg38_lifted=no system_category Renal life_stage Adult track_name EpiMap Kidney tubule cell ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Neurosphere NGEPMCHAKFVPGH • EpiMap33536621 ChromHMM Neurosphere Chromatin states Show metadata Download track Track metadata identifier NGEPMCHAKFVPGH data_source EpiMap Download track Download number_of_intervals 447,083 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Neurosphere biosample_type Stem cell biosample_term_id NCIT:C172261 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,320,115 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01377_Roadmap_2021_All_hg38.bed.gz processed_file_md5 2a842ec5b0c23e996c416011831c5dd7 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01377_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01377_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01377_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01377_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01377_18_CALLS_segments.bed.gz raw_file_md5 1a5520f51a281edb6019c53a523b4758 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=neurosphere embryo (15 weeks) originated from ganglionic eminence;tissue_of_origin=Embryo;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01377;extended_md.donor.ids=ENCDO280TXL,ENCDO594MAO;extended_md.collated.donors=ENCDO594MAO,ENCDO280TXL;extended_md.accession=ENCSR765SCM,ENCSR512CSM,ENCSR293MTQ,ENCSR694PCO,ENCSR103HMP,ENCSR379WXM,ENCSR671WZX;extended_md.biosample.ids=ENCBS239GCA,ENCBS243ZIB;extended_md.assay=ChIP-seq;extended_md.life.stage=embryonic;extended_md.age=15;extended_md.age.units=week;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=NTR:0000427;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name EpiMap Neurosphere ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Placenta NGEPMCHVKUW537 • EpiMap Enhancers33536621 ChromHMM Placenta Enhancer Show metadata Download track Track metadata identifier NGEPMCHVKUW537 data_source EpiMap_Enhancers Download track Download number_of_intervals 88,554 bp_covered 67,396,000 output_type enhancer chromatin states genome_build hg38 cell_type Placenta biosample_type Tissue biosample_term_id UBERON:0001987 tissue_category Placenta encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 826,576 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01433_ENCODE_Enh_hg38.bed.gz processed_file_md5 cf91fb3c25825d04dd9dc34490dfb451 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01433_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01433_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01433_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01433_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01433_18_CALLS_segments.bed.gz raw_file_md5 32a6658163a0babaee1ef05b9c9d7490 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=placenta embryo (56 days) and embryo (59 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01433;extended_md.donor.ids=ENCDO041UTR,ENCDO114CJX;extended_md.collated.donors=ENCDO041UTR,ENCDO114CJX;extended_md.accession=ENCSR552XJI;extended_md.biosample.ids=ENCBS527IGL,ENCBS723HLT;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=56,59;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Placental life_stage Embryonic track_name EpiMap_Enhancers Placenta ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Small intestine NGEPMCJBF6CPYG • EpiMap Enhancers33536621 ChromHMM Small intestine Enhancer Show metadata Download track Track metadata identifier NGEPMCJBF6CPYG data_source EpiMap_Enhancers Download track Download number_of_intervals 82,632 bp_covered 57,218,600 output_type enhancer chromatin states genome_build hg38 cell_type Small intestine biosample_type Tissue biosample_term_id UBERON:0002108 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 781,828 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01591_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 fd41b7adcc03278c7de7c374f9270a91 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01591_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01591_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01591_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01591_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01591_18_CALLS_segments.bed.gz raw_file_md5 86982c340657ecb8da51e6a01c78a81a data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=small intestine female embryo (107 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01591;extended_md.donor.ids=ENCDO607LOS;extended_md.collated.donors=ENCDO607LOS;extended_md.accession=ENCSR133KBX;extended_md.biosample.ids=ENCBS978IDA;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=107;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name EpiMap_Enhancers Small intestine ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Heart NGEPMCN4HMQWO2 • EpiMap Enhancers33536621 ChromHMM Heart Enhancer Show metadata Download track Track metadata identifier NGEPMCN4HMQWO2 data_source EpiMap_Enhancers Download track Download number_of_intervals 164,460 bp_covered 139,125,200 output_type enhancer chromatin states genome_build hg38 cell_type Heart biosample_type Tissue biosample_term_id NCIT:C12727 tissue_category Heart encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,528,610 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00514_ENCODE_Enh_hg38.bed.gz processed_file_md5 a20a36391d1ac84717b6cda7f7041690 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00514_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00514_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00514_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00514_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00514_18_CALLS_segments.bed.gz raw_file_md5 4d642226b8097698743d9576f10f7a70 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=heart male adult (27 years) and male adult (35 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00514;extended_md.donor.ids=ENCDO007AAA,ENCDO006AAA;extended_md.collated.donors=ENCDO007AAA,ENCDO006AAA;extended_md.accession=ENCSR000EJQ;extended_md.biosample.ids=ENCBS132AAA,ENCBS133AAA;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=27,35;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap_Enhancers Heart ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Limb NGEPMCN5GZZDZA • EpiMap33536621 ChromHMM Limb Chromatin states Show metadata Download track Track metadata identifier NGEPMCN5GZZDZA data_source EpiMap Download track Download number_of_intervals 511,507 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Limb biosample_type Tissue biosample_term_id UBERON:0002101 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,978,290 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01157_ENCODE_All_hg38.bed.gz processed_file_md5 61b2d21d39edcf2a42ccdf27a2cccc90 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01157_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01157_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01157_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01157_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01157_18_CALLS_segments.bed.gz raw_file_md5 fa9c63b94c9eae9b993cf33aaba0f243 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=limb embryo (58 days) and embryo (59 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01157;extended_md.donor.ids=ENCDO234CBV,ENCDO041UTR;extended_md.collated.donors=ENCDO234CBV,ENCDO041UTR;extended_md.accession=ENCSR532CRI;extended_md.biosample.ids=ENCBS301NVB,ENCBS872QKU;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=59,58;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=UBERON:0002101;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name EpiMap Limb ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Testis NGEPMCNCDJH33U • EpiMap33536621 ChromHMM Testis Chromatin states Show metadata Download track Track metadata identifier NGEPMCNCDJH33U data_source EpiMap Download track Download number_of_intervals 214,723 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Testis biosample_type Tissue biosample_term_id UBERON:0000473 tissue_category Male Reproductive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 2,096,263 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01715_ENCODE_All_hg38.bed.gz processed_file_md5 bb050ac77a6663f5f9d2c4fd31463c94 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01715_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01715_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01715_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01715_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01715_18_CALLS_segments.bed.gz raw_file_md5 5d3650e5a8ede2dd5603816197238e74 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=testis male adult (37 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01715;extended_md.donor.ids=ENCDO845WKR;extended_md.collated.donors=ENCDO845WKR;extended_md.accession=ENCSR376JOC,ENCSR210NKB,ENCSR611DJQ,ENCSR561MYM;extended_md.biosample.ids=ENCBS631HJF,ENCBS133MOQ;extended_md.assay=ChIP-seq,ATAC-seq;extended_md.life.stage=adult;extended_md.age=37;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap Testis ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • SK-MEL-5 NGEPMCOZNBJPHF • EpiMap33536621 ChromHMM SK-MEL-5 Chromatin states Show metadata Download track Track metadata identifier NGEPMCOZNBJPHF data_source EpiMap Download track Download number_of_intervals 408,855 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type SK-MEL-5 biosample_type Cell line biosample_term_id EFO:0005720 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,012,774 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01551_ENCODE_All_hg38.bed.gz processed_file_md5 bd1cdef5959fd1737a29129f49b707e2 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01551_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01551_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01551_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01551_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01551_18_CALLS_segments.bed.gz raw_file_md5 adb3f8e1c2d7324528a3bcd4a5f30ed7 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=SK-MEL-5;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01551;extended_md.donor.ids=ENCDO338AAA;extended_md.collated.donors=ENCDO338AAA;extended_md.accession=ENCSR008SDL,ENCSR000FEK;extended_md.biosample.ids=ENCBS981ZNI,ENCBS519AAA,ENCBS518AAA;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=24;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0005720;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name EpiMap SK-MEL-5 ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Liver NGEPMCPNX4PBGO • EpiMap Enhancers33536621 ChromHMM Liver Enhancer Show metadata Download track Track metadata identifier NGEPMCPNX4PBGO data_source EpiMap_Enhancers Download track Download number_of_intervals 91,364 bp_covered 67,323,400 output_type enhancer chromatin states genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 840,705 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00511_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 be5f30af03d677865ffd7829f2196d2e wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00511_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00511_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00511_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00511_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00511_18_CALLS_segments.bed.gz raw_file_md5 b33feae6ddfce76cf7a53a425ad95f70 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=liver male adult (32 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00511;extended_md.donor.ids=ENCDO060AAA;extended_md.collated.donors=ENCDO060AAA;extended_md.accession=ENCSR458RRZ;extended_md.biosample.ids=ENCBS360QRF;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=32;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Adult track_name EpiMap_Enhancers Liver ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Large intestine NGEPMCRRHNBXUQ • EpiMap Enhancers33536621 ChromHMM Large intestine Enhancer Show metadata Download track Track metadata identifier NGEPMCRRHNBXUQ data_source EpiMap_Enhancers Download track Download number_of_intervals 88,494 bp_covered 59,806,600 output_type enhancer chromatin states genome_build hg38 cell_type Large intestine biosample_type Tissue biosample_term_id UBERON:0000059 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 835,697 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01112_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 2059dfa62ca083a397fed3b89f0ac243 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01112_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01112_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01112_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01112_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01112_18_CALLS_segments.bed.gz raw_file_md5 bb59aa3b2ef626cd9fa0104e2142e86d data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=large intestine female embryo (108 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01112;extended_md.donor.ids=ENCDO012PVK;extended_md.collated.donors=ENCDO012PVK;extended_md.accession=ENCSR874CAK;extended_md.biosample.ids=ENCBS443ORA;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=108;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name EpiMap_Enhancers Large intestine ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Left ventricle NGEPMCRTAZPRBT • EpiMap33536621 ChromHMM Left ventricle Chromatin states Show metadata Download track Track metadata identifier NGEPMCRTAZPRBT data_source EpiMap Download track Download number_of_intervals 369,090 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Left ventricle biosample_type Tissue biosample_term_id UBERON:0002084 tissue_category Heart encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,607,623 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00508_ENCODE_All_hg38.bed.gz processed_file_md5 223cc876d29ea2800f91cdc065a97a85 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00508_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00508_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00508_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00508_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00508_18_CALLS_segments.bed.gz raw_file_md5 c149f71b2c9d7db90608a731d4e2506e data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=heart left ventricle female embryo (101 day) and female embryo (103 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00508;extended_md.donor.ids=ENCDO060OTP,ENCDO293DRY;extended_md.collated.donors=ENCDO060OTP,ENCDO293DRY;extended_md.accession=ENCSR946DXB;extended_md.biosample.ids=ENCBS743EKM,ENCBS931FTX;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=103101;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Embryonic track_name EpiMap Left ventricle ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Tibial nerve NGEPMCT23DTHRN • EpiMap Enhancers33536621 ChromHMM Tibial nerve Enhancer Show metadata Download track Track metadata identifier NGEPMCT23DTHRN data_source EpiMap_Enhancers Download track Download number_of_intervals 51,784 bp_covered 61,398,000 output_type enhancer chromatin states genome_build hg38 cell_type Tibial nerve biosample_type Tissue biosample_term_id UBERON:0001323 tissue_category Nervous encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 495,459 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01842_ENCODE_Enh_hg38.bed.gz processed_file_md5 b7d4d002bb2a9b31a81ad7b68f556ec5 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01842_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01842_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01842_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01842_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01842_18_CALLS_segments.bed.gz raw_file_md5 0eb72592224c40e0a439cc213f82dfd0 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=tibial nerve male adult (37 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01842;extended_md.donor.ids=ENCDO845WKR;extended_md.collated.donors=ENCDO845WKR;extended_md.accession=ENCSR754WNA;extended_md.biosample.ids=ENCBS127DSW;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=37;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Nervous life_stage Adult track_name EpiMap_Enhancers Tibial nerve ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Epithelial cell NGEPMCU7IZG6PY • EpiMap Enhancers33536621 ChromHMM Epithelial cell Enhancer Show metadata Download track Track metadata identifier NGEPMCU7IZG6PY data_source EpiMap_Enhancers Download track Download number_of_intervals 177,411 bp_covered 132,331,200 output_type enhancer chromatin states genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Breast encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,629,030 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01213_ENCODE_2012_Enh_hg38.bed.gz processed_file_md5 c063d395ff6b3b6f122fc3b9a6f4a9d2 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01213_ENCODE_2012_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01213_ENCODE_2012_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01213_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01213_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01213_18_CALLS_segments.bed.gz raw_file_md5 cdb4489646d45294799ec5c95fea600e data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=mammary epithelial cell female adult (50 years);tissue_of_origin=Mammary;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01213;extended_md.donor.ids=ENCDO830BUW;extended_md.collated.donors=ENCDO830BUW;extended_md.accession=ENCSR000ASB,ENCSR000ALW,ENCSR000ALX,ENCSR000AMJ,ENCSR000AMK,ENCSR000ARF,ENCSR000ALY,ENCSR000AML,ENCSR000ALZ,ENCSR000ARG,ENCSR000AMM,ENCSR016JWS;extended_md.biosample.ids=ENCBS091ENC,ENCBS045GHW,ENCBS045GHW,ENCBS091ENC,ENCBS091ENC;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=50;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap_Enhancers Epithelial cell ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • A549 NGEPMCUD3BQKCX • EpiMap Enhancers33536621 ChromHMM A549 Enhancer Show metadata Download track Track metadata identifier NGEPMCUD3BQKCX data_source EpiMap_Enhancers Download track Download number_of_intervals 115,883 bp_covered 91,437,800 output_type enhancer chromatin states genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,071,033 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00026_GGR_Enh_hg38.bed.gz processed_file_md5 3e32ffafd472a13975e1f3ed936d19d4 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00026_GGR_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00026_GGR_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00026_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00026_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00026_18_CALLS_segments.bed.gz raw_file_md5 ea9dc0df94b6087aadcc4b8d24eeb838 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=A549 treated with 100 nM dexamethasone for 5 hours;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00026;extended_md.donor.ids=ENCDO000AAZ;extended_md.collated.donors=ENCDO000AAZ;extended_md.accession=ENCSR555EAA,ENCSR565WPR,ENCSR524UOX,ENCSR225AOO,ENCSR299MNA,ENCSR716XDB;extended_md.biosample.ids=ENCBS938LTP,ENCBS032DUJ,ENCBS875EKF,ENCBS076NFI,ENCBS915DYB,ENCBS027OSU,ENCBS257YHA,ENCBS749QGQ,ENCBS712NKI,ENCBS262AII,ENCBS981XNC,ENCBS528HKR,ENCBS681JBN,ENCBS745XRX,ENCBS385PXA,ENCBS466BWX,ENCBS687HVT,ENCBS369ESF,ENCBS198WYR;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=58;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name EpiMap_Enhancers A549 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Common myeloid progenitor cell NGEPMCVBP57SLB • EpiMap Enhancers33536621 ChromHMM Common myeloid progenitor cell Enhancer Show metadata Download track Track metadata identifier NGEPMCVBP57SLB data_source EpiMap_Enhancers Download track Download number_of_intervals 142,400 bp_covered 105,258,600 output_type enhancer chromatin states genome_build hg38 cell_type Common myeloid progenitor cell biosample_type Primary cell biosample_term_id NCIT:C12552 tissue_category Umbilical Cord encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,333,674 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00230_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 112191926fe9d2d42d373671de8fd1a7 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00230_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00230_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00230_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00230_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00230_18_CALLS_segments.bed.gz raw_file_md5 f8e47c4ba848b245c999eba387c894be data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=common myeloid progenitorCD34+ female;tissue_of_origin=Cord blood;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00230;extended_md.donor.ids=ENCDO950XTR;extended_md.collated.donors=ENCDO950XTR;extended_md.accession=ENCSR191EII;extended_md.biosample.ids=ENCBS912YBQ;extended_md.assay=DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name EpiMap_Enhancers Common myeloid progenitor cell ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]