consolidated • Adrenal gland NGEPMD6XSLBHMJ • EpiMap33536621 ChromHMM Adrenal gland Chromatin states Show metadata Download track Track metadata identifier NGEPMD6XSLBHMJ data_source EpiMap Download track Download number_of_intervals 141,923 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Adrenal gland biosample_type Tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,380,937 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00056_ENCODE_All_hg38.bed.gz processed_file_md5 75daf32d3fe7368a7ce5f43577a735cc wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00056_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00056_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00056_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00056_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00056_18_CALLS_segments.bed.gz raw_file_md5 7dfe5b5d59b9c6a2f9ed07a1f8a592e1 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=adrenal gland male adult (54 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00056;extended_md.donor.ids=ENCDO451RUA;extended_md.collated.donors=ENCDO451RUA;extended_md.accession=ENCSR406PCK,ENCSR177QFY,ENCSR408ZEW,ENCSR857XRG,ENCSR113MBR,ENCSR848XIY,ENCSR926NMC;extended_md.biosample.ids=ENCBS078MQQ,ENCBS063ABX,ENCBS942WBM;extended_md.assay=ChIP-seq,ATAC-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=54;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name EpiMap Adrenal gland ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Mucosa NGEPMDA6SUSM6K • EpiMap33536621 ChromHMM Mucosa Chromatin states Show metadata Download track Track metadata identifier NGEPMDA6SUSM6K data_source EpiMap Download track Download number_of_intervals 482,419 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Mucosa biosample_type Tissue biosample_term_id UBERON:0000344 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,676,589 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01283_Roadmap_2015_All_hg38.bed.gz processed_file_md5 018edb42b01147a9aa4ee844a5fa3579 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01283_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01283_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01283_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01283_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01283_18_CALLS_segments.bed.gz raw_file_md5 fa11471964feecaca706d036234810a9 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=mucosa of rectum female adult (61 year);tissue_of_origin=Rectum;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01283;extended_md.donor.ids=ENCDO896AXO;extended_md.collated.donors=ENCDO896AXO;extended_md.accession=ENCSR826ZCF,ENCSR055MOQ,ENCSR585GLZ,ENCSR336RLL,ENCSR830HUE,ENCSR146DAL,ENCSR447OHF;extended_md.biosample.ids=ENCBS962JPP;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=61;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Adult track_name EpiMap Mucosa ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Placenta NGEPMDAQNAMLC4 • EpiMap33536621 ChromHMM Placenta Chromatin states Show metadata Download track Track metadata identifier NGEPMDAQNAMLC4 data_source EpiMap Download track Download number_of_intervals 330,769 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Placenta biosample_type Tissue biosample_term_id UBERON:0001987 tissue_category Placenta encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,235,852 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01432_ENCODE_All_hg38.bed.gz processed_file_md5 f5039d51a361471f66b6b458c19134b8 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01432_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01432_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01432_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01432_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01432_18_CALLS_segments.bed.gz raw_file_md5 05a1bb4a39b58d9f13250a92bdd33e57 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=placenta embryo (53 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01432;extended_md.donor.ids=ENCDO733WDT,ENCDO870GPO;extended_md.collated.donors=ENCDO733WDT,ENCDO870GPO;extended_md.accession=ENCSR499IFY;extended_md.biosample.ids=ENCBS138QHR,ENCBS428ZCZ;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=53;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Placental life_stage Embryonic track_name EpiMap Placenta ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Neuronal progenitor cell NGEPMDAQSZ2NHN • EpiMap33536621 ChromHMM Neuronal progenitor cell Chromatin states Show metadata Download track Track metadata identifier NGEPMDAQSZ2NHN data_source EpiMap Download track Download number_of_intervals 505,554 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Neuronal progenitor cell biosample_type Stem cell biosample_term_id CL:0000047 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,946,651 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01372_Roadmap_2015_All_hg38.bed.gz processed_file_md5 aee9d0a5b4f4ad1d17f6e5deacf08df7 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01372_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01372_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01372_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01372_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01372_18_CALLS_segments.bed.gz raw_file_md5 9518ad72a81551ce1d34de2bba9f6d73 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=neural stem progenitor cell originated from H9;tissue_of_origin=Embryo;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01372;extended_md.donor.ids=ENCDO222AAA;extended_md.collated.donors=ENCDO222AAA;extended_md.accession=ENCSR021HLX,ENCSR238WMO,ENCSR354XWM,ENCSR550XZG,ENCSR169BGF,ENCSR800IIW;extended_md.biosample.ids=ENCBS454LPJ,ENCBS014DSD,ENCBS405AJM,ENCBS454LPJ;extended_md.assay=ChIP-seq;extended_md.life.stage=embryonic;extended_md.age=5;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name EpiMap Neuronal progenitor cell ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Right ventricle NGEPMDBVSRESDY • EpiMap Enhancers33536621 ChromHMM Right ventricle Enhancer Show metadata Download track Track metadata identifier NGEPMDBVSRESDY data_source EpiMap_Enhancers Download track Download number_of_intervals 71,354 bp_covered 59,099,400 output_type enhancer chromatin states genome_build hg38 cell_type Right ventricle biosample_type Tissue biosample_term_id UBERON:0002080 tissue_category Heart encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 678,849 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00525_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 475e4c1add03d084325eac8cead2c68c wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00525_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00525_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00525_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00525_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00525_18_CALLS_segments.bed.gz raw_file_md5 3a4f56d979075bef4dc756925c810f61 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=heart right ventricle male child (3 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00525;extended_md.donor.ids=ENCDO478OMA;extended_md.collated.donors=ENCDO478OMA;extended_md.accession=ENCSR616VTK,ENCSR028NXO,ENCSR086JMA,ENCSR676LPF,ENCSR023ALV,ENCSR107RDP;extended_md.biosample.ids=ENCBS860CMY;extended_md.assay=ChIP-seq;extended_md.life.stage=child;extended_md.age=3;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=UBERON:0002080;is_hg38_lifted=no system_category Cardiovascular life_stage Child track_name EpiMap_Enhancers Right ventricle ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Child] [Enhancer]
consolidated • A549 NGEPMDCRFKXNA6 • EpiMap Enhancers33536621 ChromHMM A549 Enhancer Show metadata Download track Track metadata identifier NGEPMDCRFKXNA6 data_source EpiMap_Enhancers Download track Download number_of_intervals 128,705 bp_covered 107,395,400 output_type enhancer chromatin states genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,185,066 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00030_GGR_Enh_hg38.bed.gz processed_file_md5 e25e488aea4738bd256c25e39d46ddbe wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00030_GGR_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00030_GGR_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00030_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00030_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00030_18_CALLS_segments.bed.gz raw_file_md5 350abcbb3c7d3c10fa2cbf3a8c906fb9 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=A549 treated with 100 nM dexamethasone for 8 hours;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00030;extended_md.donor.ids=ENCDO000AAZ;extended_md.collated.donors=ENCDO000AAZ;extended_md.accession=ENCSR660OQE,ENCSR250EHC,ENCSR074AHH,ENCSR618MUP,ENCSR791BNU,ENCSR404OLV,ENCSR774KCU;extended_md.biosample.ids=ENCBS461GBL,ENCBS898FLP,ENCBS410NHM,ENCBS398XGZ,ENCBS947WTB,ENCBS342HZL,ENCBS185EJU,ENCBS423SRU,ENCBS998NWZ,ENCBS044YWQ,ENCBS290TVV,ENCBS246IJP,ENCBS117OOH,ENCBS353ZPN,ENCBS435CFB,ENCBS086UGG,ENCBS606KBB,ENCBS430EPP,ENCBS784LUH,ENCBS291TVJ,ENCBS323CFG;extended_md.assay=ChIP-seq,ATAC-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=58;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name EpiMap_Enhancers A549 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Coronary artery NGEPMDCYFTQNID • EpiMap33536621 ChromHMM Coronary artery Chromatin states Show metadata Download track Track metadata identifier NGEPMDCYFTQNID data_source EpiMap Download track Download number_of_intervals 371,947 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Coronary artery biosample_type Tissue biosample_term_id UBERON:0001621 tissue_category Blood Vessel encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,592,046 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00243_ENCODE_All_hg38.bed.gz processed_file_md5 6c7c18d01842d5ac407082e2bae341f0 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00243_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00243_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00243_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00243_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00243_18_CALLS_segments.bed.gz raw_file_md5 bd75a313c362ca61c5cd91ee3828069e data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=coronary artery female adult (53 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00243;extended_md.donor.ids=ENCDO793LXB;extended_md.collated.donors=ENCDO793LXB;extended_md.accession=ENCSR443UYU,ENCSR343ZOV,ENCSR060HPL;extended_md.biosample.ids=ENCBS474IPU,ENCBS212IQG;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=53;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap Coronary artery ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • NT2/D1 NGEPMDDRGEIJJL • EpiMap Enhancers33536621 ChromHMM NT2/D1 Enhancer Show metadata Download track Track metadata identifier NGEPMDDRGEIJJL data_source EpiMap_Enhancers Download track Download number_of_intervals 136,578 bp_covered 103,169,800 output_type enhancer chromatin states genome_build hg38 cell_type NT2/D1 biosample_type Cell line biosample_term_id EFO:0005236 tissue_category Male Reproductive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,288,729 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01386_ENCODE_Enh_hg38.bed.gz processed_file_md5 23576622365a191a7b0e994c4f42bc09 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01386_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01386_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01386_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01386_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01386_18_CALLS_segments.bed.gz raw_file_md5 24987c76a2a804640b4dc8ff224a839b data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=NT2/D1;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01386;extended_md.donor.ids=ENCDO000ADH;extended_md.collated.donors=ENCDO000ADH;extended_md.accession=ENCSR000EXA,ENCSR000EXB,ENCSR000EXC,ENCSR000EXD,ENCSR000EXE,ENCSR000EPS,ENCSR000EWZ;extended_md.biosample.ids=ENCBS578HFO,ENCBS631LTU,ENCBS810EWQ;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=unknown;extended_md.age=22;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0005236;is_hg38_lifted=no system_category Reproductive life_stage Unknown track_name EpiMap_Enhancers NT2/D1 ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]
consolidated • Adipose NGEPMDDSC2G7DD • EpiMap33536621 ChromHMM Adipose Chromatin states Show metadata Download track Track metadata identifier NGEPMDDSC2G7DD data_source EpiMap Download track Download number_of_intervals 504,753 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Adipose biosample_type Tissue biosample_term_id NCIT:C12472 tissue_category Adipose encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,927,479 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01667_Roadmap_2015_All_hg38.bed.gz processed_file_md5 2d36d0a8073475ba91d6c7e3a403cb30 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01667_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01667_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01667_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01667_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01667_18_CALLS_segments.bed.gz raw_file_md5 e89458b3fcd3ccb6749c325c32f60500 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=subcutaneous abdominal adipose tissue nuclear fraction female adult (49 years);tissue_of_origin=Subcutaneous abdominal;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01667;extended_md.donor.ids=ENCDO622KQK;extended_md.collated.donors=ENCDO622KQK;extended_md.accession=ENCSR731XOV,ENCSR286WUR,ENCSR243UVC,ENCSR011MGQ,ENCSR989POD,ENCSR664RRY,ENCSR605NNZ;extended_md.biosample.ids=ENCBS183BZR;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=49;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name EpiMap Adipose ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Hematopoietic multipotent progenitor cell NGEPMDDXVXKKD5 • EpiMap33536621 ChromHMM Hematopoietic multipotent progenitor cell Chromatin states Show metadata Download track Track metadata identifier NGEPMDDXVXKKD5 data_source EpiMap Download track Download number_of_intervals 408,982 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Hematopoietic multipotent progenitor cell biosample_type In vitro differentiated cells biosample_term_id CL:0000837 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,994,747 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00544_ENCODE_All_hg38.bed.gz processed_file_md5 cca05ea676c187d6c78435f2076737fb wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00544_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00544_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00544_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00544_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00544_18_CALLS_segments.bed.gz raw_file_md5 e0102b1873ef9def1372bb5c164d5ff0 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=hematopoietic multipotent progenitor cell treated with erythropoietin for 20 dayshydrocortisone succinate for 20 dayskit ligand for 20 daysinterleukin-3 for 20 days;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00544;extended_md.donor.ids=ENCDO937OUY;extended_md.collated.donors=ENCDO937OUY;extended_md.accession=ENCSR115YPI;extended_md.biosample.ids=ENCBS233BAS;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=25;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap Hematopoietic multipotent progenitor cell ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • GM06990 NGEPMDEYEC5CHM • EpiMap33536621 ChromHMM GM06990 Chromatin states Show metadata Download track Track metadata identifier NGEPMDEYEC5CHM data_source EpiMap Download track Download number_of_intervals 521,562 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type GM06990 biosample_type Cell line biosample_term_id EFO:0002783 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,085,352 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00395_ENCODE_All_hg38.bed.gz processed_file_md5 bafc75335b3d37036cb6f808f04b355f wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00395_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00395_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00395_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00395_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00395_18_CALLS_segments.bed.gz raw_file_md5 16b313a1307f9a037b175135bfd9bcd9 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=GM06990;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00395;extended_md.donor.ids=ENCDO000ABG;extended_md.collated.donors=ENCDO000ABG;extended_md.accession=ENCSR000EMQ,ENCSR000DQT,ENCSR000DQU,ENCSR000DQV;extended_md.biosample.ids=ENCBS875KTK,ENCBS987SKT,ENCBS987SKT,ENCBS875KTK,ENCBS414HDG,ENCBS057ENC,ENCBS185XLT,ENCBS146QHV;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0002783;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name EpiMap GM06990 ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • Epithelial cell NGEPMDF6U55WKR • EpiMap33536621 ChromHMM Epithelial cell Chromatin states Show metadata Download track Track metadata identifier NGEPMDF6U55WKR data_source EpiMap Download track Download number_of_intervals 530,021 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Eye encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,155,947 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01385_ENCODE_All_hg38.bed.gz processed_file_md5 dd028f63eadfe7bafcbc6223ee8073cf wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01385_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01385_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01385_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01385_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01385_18_CALLS_segments.bed.gz raw_file_md5 b479b3497362a777d5c17f338924a99e data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=non-pigmented ciliary epithelial cell;tissue_of_origin=Non-pigmented ciliary;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01385;extended_md.donor.ids=ENCDO105AAA;extended_md.collated.donors=ENCDO105AAA;extended_md.accession=ENCSR000EOF;extended_md.biosample.ids=ENCBS024ZMP,ENCBS406ENC;extended_md.assay=DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Sensory life_stage Unknown track_name EpiMap Epithelial cell ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • Skeletal muscle tissue NGEPMDFLUUOANY • EpiMap Enhancers33536621 ChromHMM Skeletal muscle tissue Enhancer Show metadata Download track Track metadata identifier NGEPMDFLUUOANY data_source EpiMap_Enhancers Download track Download number_of_intervals 170,591 bp_covered 115,648,800 output_type enhancer chromatin states genome_build hg38 cell_type Skeletal muscle tissue biosample_type Tissue biosample_term_id UBERON:0001134 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,584,140 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01577_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 fba887b552bbe16fea9c01d29fd9d29a wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01577_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01577_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01577_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01577_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01577_18_CALLS_segments.bed.gz raw_file_md5 a32faa74d19e1ed1a3cd1c77d6334e80 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=skeletal muscle tissue;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01577;extended_md.donor.ids=ENCDO654YBK;extended_md.collated.donors=ENCDO654YBK;extended_md.accession=ENCSR329DTQ,ENCSR429EVA,ENCSR560IDY,ENCSR146JFX,ENCSR238LEG,ENCSR836GCA;extended_md.biosample.ids=ENCBS149BYX;extended_md.assay=ChIP-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Unknown track_name EpiMap_Enhancers Skeletal muscle tissue ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]
consolidated • Peripheral blood mononuclear cell NGEPMDFM5TNAT6 • EpiMap Enhancers33536621 ChromHMM Peripheral blood mononuclear cell Enhancer Show metadata Download track Track metadata identifier NGEPMDFM5TNAT6 data_source EpiMap_Enhancers Download track Download number_of_intervals 26,329 bp_covered 20,384,400 output_type enhancer chromatin states genome_build hg38 cell_type Peripheral blood mononuclear cell biosample_type Primary cell biosample_term_id CL:2000001 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 264,579 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01424_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 d8c0047edc94d1bb9fe6b3df4a367a15 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01424_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01424_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01424_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01424_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01424_18_CALLS_segments.bed.gz raw_file_md5 33ced75c1fb7a973ecfcd0cea15345d6 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=peripheral blood mononuclear cell male adult (39 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01424;extended_md.donor.ids=ENCDO424KSR;extended_md.collated.donors=ENCDO424KSR;extended_md.accession=ENCSR553XBX,ENCSR258ORJ,ENCSR105EMQ,ENCSR275EAG,ENCSR692DOM,ENCSR420EWO;extended_md.biosample.ids=ENCBS770TLM;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=39;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap_Enhancers Peripheral blood mononuclear cell ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • SJCRH30 NGEPMDGKDAWFWF • EpiMap Enhancers33536621 ChromHMM SJCRH30 Enhancer Show metadata Download track Track metadata identifier NGEPMDGKDAWFWF data_source EpiMap_Enhancers Download track Download number_of_intervals 99,811 bp_covered 71,232,800 output_type enhancer chromatin states genome_build hg38 cell_type SJCRH30 biosample_type Cell line biosample_term_id EFO:0005722 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 945,758 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01549_ENCODE_Enh_hg38.bed.gz processed_file_md5 52f5b9c44c6d7ef0ec4d0f4b4c15c893 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01549_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01549_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01549_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01549_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01549_18_CALLS_segments.bed.gz raw_file_md5 01ad4e5147ab5d03af04958b3961ae0f data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=SJCRH30;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01549;extended_md.donor.ids=ENCDO339AAA;extended_md.collated.donors=ENCDO339AAA;extended_md.accession=ENCSR000FFJ,ENCSR700ILE;extended_md.biosample.ids=ENCBS516AAA,ENCBS517AAA,ENCBS504BIZ;extended_md.assay=DNase-seq;extended_md.life.stage=child;extended_md.age=17;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0005722;is_hg38_lifted=no system_category Muscular life_stage Child track_name EpiMap_Enhancers SJCRH30 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Child] [Enhancer]
consolidated • Stomach NGEPMDGWTG2EGH • EpiMap Enhancers33536621 ChromHMM Stomach Enhancer Show metadata Download track Track metadata identifier NGEPMDGWTG2EGH data_source EpiMap_Enhancers Download track Download number_of_intervals 134,650 bp_covered 101,051,200 output_type enhancer chromatin states genome_build hg38 cell_type Stomach biosample_type Tissue biosample_term_id UBERON:0000945 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,283,479 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01650_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 43df2b2a032756991363259b24a37fbf wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01650_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01650_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01650_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01650_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01650_18_CALLS_segments.bed.gz raw_file_md5 f9f0d9d2f2e050291d2d19946db34b46 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=stomach female embryo (98 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01650;extended_md.donor.ids=ENCDO442NQP,ENCDO837QWL;extended_md.collated.donors=ENCDO837QWL,ENCDO442NQP;extended_md.accession=ENCSR202RXT,ENCSR697YSL,ENCSR208DMX;extended_md.biosample.ids=ENCBS291NHF,ENCBS956XJM;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=embryonic;extended_md.age=98;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name EpiMap_Enhancers Stomach ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Adrenal gland NGEPMDI6KNVNDU • EpiMap33536621 ChromHMM Adrenal gland Chromatin states Show metadata Download track Track metadata identifier NGEPMDI6KNVNDU data_source EpiMap Download track Download number_of_intervals 235,721 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Adrenal gland biosample_type Tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 2,277,609 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00054_Roadmap_2021_All_hg38.bed.gz processed_file_md5 87abcb27c184fe4cd2d68e7437564000 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00054_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00054_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00054_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00054_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00054_18_CALLS_segments.bed.gz raw_file_md5 95b61069b3be68badfc8cc90795d431c data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=adrenal gland male adult (34 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00054;extended_md.donor.ids=ENCDO058AAA;extended_md.collated.donors=ENCDO058AAA;extended_md.accession=ENCSR181JFC,ENCSR234YIU,ENCSR992VZG,ENCSR405ESP,ENCSR942XCE,ENCSR511GOF;extended_md.biosample.ids=ENCBS549JSH;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=34;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name EpiMap Adrenal gland ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Common myeloid progenitor cell NGEPMDIEJUB6PD • EpiMap Enhancers33536621 ChromHMM Common myeloid progenitor cell Enhancer Show metadata Download track Track metadata identifier NGEPMDIEJUB6PD data_source EpiMap_Enhancers Download track Download number_of_intervals 134,664 bp_covered 106,992,200 output_type enhancer chromatin states genome_build hg38 cell_type Common myeloid progenitor cell biosample_type Primary cell biosample_term_id NCIT:C12552 tissue_category Umbilical Cord encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,268,624 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00233_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 b93870d5d6b14ad4aeda1a94ecc534b2 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00233_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00233_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00233_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00233_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00233_18_CALLS_segments.bed.gz raw_file_md5 0699662358d73e4c82d8fe5d103616b9 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=common myeloid progenitorCD34+ female adult (50 years);tissue_of_origin=Cord blood;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00233;extended_md.donor.ids=ENCDO957RHA;extended_md.collated.donors=ENCDO957RHA;extended_md.accession=ENCSR320TUJ;extended_md.biosample.ids=ENCBS919HJT;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=50;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Embryo life_stage Adult track_name EpiMap_Enhancers Common myeloid progenitor cell ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Caudate nucleus NGEPMDIFYZOGKS • EpiMap33536621 ChromHMM Caudate nucleus Chromatin states Show metadata Download track Track metadata identifier NGEPMDIFYZOGKS data_source EpiMap Download track Download number_of_intervals 594,110 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Caudate nucleus biosample_type Tissue biosample_term_id UBERON:0001873 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,737,176 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00173_Roadmap_2015_All_hg38.bed.gz processed_file_md5 a04b2d9249a5166c3c9303fc0deb6d52 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00173_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00173_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00173_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00173_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00173_18_CALLS_segments.bed.gz raw_file_md5 95d02df48e2bbb8083c5cd1aa2a653c0 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=caudate nucleus female adult (75 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00173;extended_md.donor.ids=ENCDO871IWW;extended_md.collated.donors=ENCDO871IWW;extended_md.accession=ENCSR264YGM,ENCSR209WQN,ENCSR486QMV,ENCSR672FMZ,ENCSR798RTU,ENCSR552TQB,ENCSR399SJE;extended_md.biosample.ids=ENCBS154RSX;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=75;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Nervous life_stage Adult track_name EpiMap Caudate nucleus ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Epithelial cell NGEPMDITPJL2TE • EpiMap Enhancers33536621 ChromHMM Epithelial cell Enhancer Show metadata Download track Track metadata identifier NGEPMDITPJL2TE data_source EpiMap_Enhancers Download track Download number_of_intervals 128,305 bp_covered 85,041,600 output_type enhancer chromatin states genome_build hg38 cell_type Epithelial cell biosample_type Cell line biosample_term_id CL:0000066 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,194,596 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00223_ENCODE_Enh_hg38.bed.gz processed_file_md5 c45d5a86e456eff1fdeff709439b618a wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00223_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00223_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00223_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00223_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00223_18_CALLS_segments.bed.gz raw_file_md5 fef50ced23c87ab78b3b46c25037c0d8 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=HCEC 1CT;tissue_of_origin=Colon;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00223;extended_md.donor.ids=ENCDO336HXJ;extended_md.collated.donors=ENCDO336HXJ;extended_md.accession=ENCSR038XTK;extended_md.biosample.ids=ENCBS573VIG,ENCBS654NDM;extended_md.assay=DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Unknown track_name EpiMap_Enhancers Epithelial cell ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]