consolidated • Luminal epithelial cell NGEPMDZ5CRWTRD • EpiMap Enhancers33536621 ChromHMM Luminal epithelial cell Enhancer Show metadata Download track Track metadata identifier NGEPMDZ5CRWTRD data_source EpiMap_Enhancers Download track Download number_of_intervals 89,952 bp_covered 63,705,600 output_type enhancer chromatin states genome_build hg38 cell_type Luminal epithelial cell biosample_type Primary cell biosample_term_id CL:0002326 tissue_category Breast encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 860,589 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01185_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 b36175f3412f605138c51960df507152 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01185_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01185_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01185_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01185_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01185_18_CALLS_segments.bed.gz raw_file_md5 84bc2256b52c284837198a36e0357eae data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=luminal epithelial cell of mammary gland female adult (33 years);tissue_of_origin=Mammary gland;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01185;extended_md.donor.ids=ENCDO819SJC;extended_md.collated.donors=ENCDO819SJC;extended_md.accession=ENCSR293UEB,ENCSR113OII,ENCSR212LIS,ENCSR529ECZ;extended_md.biosample.ids=ENCBS792MMK;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=33;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=CL:0002326;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap_Enhancers Luminal epithelial cell ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Lung NGEPMDZSEHUIXR • EpiMap33536621 ChromHMM Lung Chromatin states Show metadata Download track Track metadata identifier NGEPMDZSEHUIXR data_source EpiMap Download track Download number_of_intervals 440,772 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,296,357 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01149_Roadmap_2021_All_hg38.bed.gz processed_file_md5 39fd25bf93ffa4d1e718100b91398a55 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01149_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01149_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01149_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01149_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01149_18_CALLS_segments.bed.gz raw_file_md5 1f01ad20fbef5a8cc2cf3e44a84e631c data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=left lung male embryo (96 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01149;extended_md.donor.ids=ENCDO817EKT;extended_md.collated.donors=ENCDO817EKT;extended_md.accession=ENCSR639XWF;extended_md.biosample.ids=ENCBS516MKG;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=96;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Embryonic track_name EpiMap Lung ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Pancreas NGEPME2TKBEPRQ • EpiMap33536621 ChromHMM Pancreas Chromatin states Show metadata Download track Track metadata identifier NGEPME2TKBEPRQ data_source EpiMap Download track Download number_of_intervals 317,411 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Pancreas biosample_type Tissue biosample_term_id UBERON:0001264 tissue_category Pancreas encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,030,074 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00124_ENCODE_All_hg38.bed.gz processed_file_md5 eedc822bb49ae109dab0563ad73e5f86 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00124_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00124_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00124_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00124_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00124_18_CALLS_segments.bed.gz raw_file_md5 fb07c0eb3d0a8301b5bbfebb1a988bea data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=body of pancreas male adult (54 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00124;extended_md.donor.ids=ENCDO451RUA;extended_md.collated.donors=ENCDO451RUA;extended_md.accession=ENCSR228IKB,ENCSR523JCB,ENCSR348TQM,ENCSR554RQQ,ENCSR774CFO,ENCSR863TAL,ENCSR596PFU,ENCSR765MXG;extended_md.biosample.ids=ENCBS867VCV,ENCBS209WBW,ENCBS268HAX;extended_md.assay=ChIP-seq,ATAC-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=54;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name EpiMap Pancreas ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Heart NGEPME2ZVFBLJ5 • EpiMap33536621 ChromHMM Heart Chromatin states Show metadata Download track Track metadata identifier NGEPME2ZVFBLJ5 data_source EpiMap Download track Download number_of_intervals 559,254 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Heart biosample_type Tissue biosample_term_id NCIT:C12727 tissue_category Heart encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,422,276 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00521_Roadmap_2015_All_hg38.bed.gz processed_file_md5 9ee933b9d950efbc3e24fa15ea2daeb6 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00521_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00521_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00521_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00521_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00521_18_CALLS_segments.bed.gz raw_file_md5 d3fb309fc4089d8f90ef053909f663be data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=heart male embryo (91 day);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00521;extended_md.donor.ids=ENCDO375VTO;extended_md.collated.donors=ENCDO375VTO;extended_md.accession=ENCSR358RVW,ENCSR676ZKW;extended_md.biosample.ids=ENCBS334PQY;extended_md.assay=ChIP-seq;extended_md.life.stage=embryonic;extended_md.age=91;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Embryonic track_name EpiMap Heart ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Smooth muscle cell NGEPME3THTMTK7 • EpiMap33536621 ChromHMM Smooth muscle cell Chromatin states Show metadata Download track Track metadata identifier NGEPME3THTMTK7 data_source EpiMap Download track Download number_of_intervals 438,799 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Smooth muscle cell biosample_type Primary cell biosample_term_id CL:0000192 tissue_category Blood Vessel encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,283,949 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01606_ENCODE_All_hg38.bed.gz processed_file_md5 1b24dd364ff3e3c3974887ac73b1ff63 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01606_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01606_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01606_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01606_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01606_18_CALLS_segments.bed.gz raw_file_md5 c2cfe4fdec2924b61f7c5bc7be909559 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=smooth muscle cell of the brain vasculature female;tissue_of_origin=Brain vascular;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01606;extended_md.donor.ids=ENCDO229AAA;extended_md.collated.donors=ENCDO229AAA;extended_md.accession=ENCSR000ENG;extended_md.biosample.ids=ENCBS306AAA,ENCBS559NJN;extended_md.assay=DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name EpiMap Smooth muscle cell ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • Skin NGEPME3ZIHOH2A • EpiMap Enhancers33536621 ChromHMM Skin Enhancer Show metadata Download track Track metadata identifier NGEPME3ZIHOH2A data_source EpiMap_Enhancers Download track Download number_of_intervals 64,828 bp_covered 44,124,800 output_type enhancer chromatin states genome_build hg38 cell_type Skin biosample_type Tissue biosample_term_id UBERON:0002097 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 624,518 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01587_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 6bb700bddb55039696fd4cb2dbcfb87a wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01587_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01587_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01587_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01587_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01587_18_CALLS_segments.bed.gz raw_file_md5 3fe68bed4cc524a02a7ca30b672c76fe data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=skin of body female embryo (82 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01587;extended_md.donor.ids=ENCDO449WOZ;extended_md.collated.donors=ENCDO449WOZ;extended_md.accession=ENCSR092OFK;extended_md.biosample.ids=ENCBS948BKE;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=82;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Integumentary life_stage Embryonic track_name EpiMap_Enhancers Skin ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Heart NGEPME4T64ZYXX • EpiMap Enhancers33536621 ChromHMM Heart Enhancer Show metadata Download track Track metadata identifier NGEPME4T64ZYXX data_source EpiMap_Enhancers Download track Download number_of_intervals 117,499 bp_covered 83,793,400 output_type enhancer chromatin states genome_build hg38 cell_type Heart biosample_type Tissue biosample_term_id NCIT:C12727 tissue_category Heart encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,099,318 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00494_ENCODE_Enh_hg38.bed.gz processed_file_md5 6f94f25112da8204767d89ca4b4f32d7 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00494_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00494_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00494_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00494_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00494_18_CALLS_segments.bed.gz raw_file_md5 3ee3fde6f3aed9ab1e35e7143e16bd89 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=heart embryo (59 days) and female embryo (76 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00494;extended_md.donor.ids=ENCDO237NAG,ENCDO163CLX;extended_md.collated.donors=ENCDO237NAG,ENCDO163CLX;extended_md.accession=ENCSR664PKM;extended_md.biosample.ids=ENCBS953MIB,ENCBS910QFW;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=59,76;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Embryonic track_name EpiMap_Enhancers Heart ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Epidermal keratinocyte NGEPME55XAOJE4 • EpiMap33536621 ChromHMM Epidermal keratinocyte Chromatin states Show metadata Download track Track metadata identifier NGEPME55XAOJE4 data_source EpiMap Download track Download number_of_intervals 522,063 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Epidermal keratinocyte biosample_type Primary cell biosample_term_id CL:4052061 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,075,289 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01071_ENCODE_2012_All_hg38.bed.gz processed_file_md5 3e43ad504bb263178b0ca2aac5c0c8c4 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01071_ENCODE_2012_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01071_ENCODE_2012_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01071_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01071_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01071_18_CALLS_segments.bed.gz raw_file_md5 4446ea4bb16a044e9af95ba3bb02e021 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=keratinocyte male;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01071;extended_md.donor.ids=ENCDO303AAA;extended_md.collated.donors=ENCDO303AAA;extended_md.accession=ENCSR000ALN;extended_md.biosample.ids=ENCBS650AAA;extended_md.assay=ChIP-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Integumentary life_stage Unknown track_name EpiMap Epidermal keratinocyte ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • Spinal cord NGEPME5FD6NA3U • EpiMap33536621 ChromHMM Spinal cord Chromatin states Show metadata Download track Track metadata identifier NGEPME5FD6NA3U data_source EpiMap Download track Download number_of_intervals 376,557 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Spinal cord biosample_type Tissue biosample_term_id UBERON:0002240 tissue_category Nervous encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,696,515 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01617_ENCODE_All_hg38.bed.gz processed_file_md5 4df9252bbef652f53cad13cbb965d545 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01617_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01617_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01617_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01617_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01617_18_CALLS_segments.bed.gz raw_file_md5 cf81e1a04a8647919c67fa396c0f4cfe data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=spinal cord female embryo (59 days) and male embryo (72 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01617;extended_md.donor.ids=ENCDO294EUZ,ENCDO300THQ;extended_md.collated.donors=ENCDO294EUZ,ENCDO300THQ;extended_md.accession=ENCSR910OQF;extended_md.biosample.ids=ENCBS144CBA,ENCBS665NIQ;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=59,72;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Nervous life_stage Embryonic track_name EpiMap Spinal cord ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Thymus NGEPME5Q7OOX6P • EpiMap33536621 ChromHMM Thymus Chromatin states Show metadata Download track Track metadata identifier NGEPME5Q7OOX6P data_source EpiMap Download track Download number_of_intervals 470,854 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Thymus biosample_type Tissue biosample_term_id UBERON:0002370 tissue_category Immune Organ encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,602,853 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01818_Roadmap_2015_All_hg38.bed.gz processed_file_md5 89768e49c0c6394ba653b784f3f12e15 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01818_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01818_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01818_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01818_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01818_18_CALLS_segments.bed.gz raw_file_md5 ff2d2544404a5602f4849483460047c3 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=thymus female embryo;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01818;extended_md.donor.ids=ENCDO196CPA;extended_md.collated.donors=ENCDO196CPA;extended_md.accession=ENCSR682PKY;extended_md.biosample.ids=ENCBS620MUO;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Lymphatic life_stage Embryonic track_name EpiMap Thymus ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Muscle layer NGEPME6VAGFVHJ • EpiMap Enhancers33536621 ChromHMM Muscle layer Enhancer Show metadata Download track Track metadata identifier NGEPME6VAGFVHJ data_source EpiMap_Enhancers Download track Download number_of_intervals 122,332 bp_covered 92,481,000 output_type enhancer chromatin states genome_build hg38 cell_type Muscle layer biosample_type Tissue biosample_term_id UBERON:0006660 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,139,673 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01285_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 9355db88c825487933319ade004efef8 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01285_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01285_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01285_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01285_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01285_18_CALLS_segments.bed.gz raw_file_md5 39ff7a6fe8362475073a2c252ee48535 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=muscle layer of colon female adult (56 years);tissue_of_origin=Colon;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01285;extended_md.donor.ids=ENCDO266YSK;extended_md.collated.donors=ENCDO266YSK;extended_md.accession=ENCSR576YAD,ENCSR004EKY,ENCSR170VSJ,ENCSR858LJY,ENCSR011GVU;extended_md.biosample.ids=ENCBS179LVQ;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=56;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Adult track_name EpiMap_Enhancers Muscle layer ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Liver NGEPMEAQEQ2U2S • EpiMap Enhancers33536621 ChromHMM Liver Enhancer Show metadata Download track Track metadata identifier NGEPMEAQEQ2U2S data_source EpiMap_Enhancers Download track Download number_of_intervals 97,228 bp_covered 79,511,600 output_type enhancer chromatin states genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 925,025 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01158_ENCODE_Enh_hg38.bed.gz processed_file_md5 8f9ea27a9c21355ca55d40020b3ac00a wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01158_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01158_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01158_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01158_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01158_18_CALLS_segments.bed.gz raw_file_md5 cc9a4e4c38ab9bf207f8b9ae74e1eb90 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=liver embryo (59 days) and embryo (80 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01158;extended_md.donor.ids=ENCDO662IIE,ENCDO163CLX;extended_md.collated.donors=ENCDO662IIE,ENCDO163CLX;extended_md.accession=ENCSR158YXM;extended_md.biosample.ids=ENCBS150DWF,ENCBS064CNC;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=59,80;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name EpiMap_Enhancers Liver ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Epithelium NGEPMEB6XBKSYW • EpiMap Enhancers33536621 ChromHMM Epithelium Enhancer Show metadata Download track Track metadata identifier NGEPMEB6XBKSYW data_source EpiMap_Enhancers Download track Download number_of_intervals 69,559 bp_covered 97,534,800 output_type enhancer chromatin states genome_build hg38 cell_type Epithelium biosample_type Tissue biosample_term_id NCIT:C12710 tissue_category Breast encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 663,829 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00146_ENCODE_Enh_hg38.bed.gz processed_file_md5 c1ca116411133e259faea850b34769e0 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00146_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00146_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00146_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00146_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00146_18_CALLS_segments.bed.gz raw_file_md5 c988cbeb42dfa3bbe987803259b927f4 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=breast epithelium female adult (53 years);tissue_of_origin=Breast;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00146;extended_md.donor.ids=ENCDO793LXB;extended_md.collated.donors=ENCDO793LXB;extended_md.accession=ENCSR416AUW,ENCSR654UYP,ENCSR553IAW,ENCSR403UOU,ENCSR770WSE,ENCSR034ZKE,ENCSR543YQF;extended_md.biosample.ids=ENCBS114DQJ,ENCBS433LAO;extended_md.assay=ChIP-seq,ATAC-seq;extended_md.life.stage=adult;extended_md.age=53;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap_Enhancers Epithelium ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • K562 NGEPMEBK4PVCZN • EpiMap Enhancers33536621 ChromHMM K562 Enhancer Show metadata Download track Track metadata identifier NGEPMEBK4PVCZN data_source EpiMap_Enhancers Download track Download number_of_intervals 148,173 bp_covered 120,847,600 output_type enhancer chromatin states genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,383,549 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01059_ENCODE_Enh_hg38.bed.gz processed_file_md5 c2e3273a4aecff2ccc72f3a64c924c11 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01059_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01059_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01059_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01059_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01059_18_CALLS_segments.bed.gz raw_file_md5 20a4e1aa9929ccd4e724dbf18227a1f4 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=K562 treated with 500 ?M sodium butyrate for 72 hours;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01059;extended_md.donor.ids=ENCDO000AAD;extended_md.collated.donors=ENCDO000AAD;extended_md.accession=ENCSR000EKR;extended_md.biosample.ids=ENCBS777AAA;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=53;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap_Enhancers K562 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Kidney tubule cell NGEPMEBS24E55O • EpiMap33536621 ChromHMM Kidney tubule cell Chromatin states Show metadata Download track Track metadata identifier NGEPMEBS24E55O data_source EpiMap Download track Download number_of_intervals 465,406 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Kidney tubule cell biosample_type Primary cell biosample_term_id CL:1000507 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,539,325 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01102_ENCODE_All_hg38.bed.gz processed_file_md5 9ae29def0ee75d4db5aeee404db21053 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01102_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01102_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01102_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01102_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01102_18_CALLS_segments.bed.gz raw_file_md5 bbaa69e70c998593fccc94458904f3c5 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=kidney tubule cell female adult (80 years) and male adult (62 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01102;extended_md.donor.ids=ENCDO335XPZ,ENCDO421EJG;extended_md.collated.donors=ENCDO335XPZ,ENCDO421EJG;extended_md.accession=ENCSR175IWT;extended_md.biosample.ids=ENCBS546UCS,ENCBS947UTL;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=80,62;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=CL:1000507;is_hg38_lifted=no system_category Renal life_stage Adult track_name EpiMap Kidney tubule cell ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Kidney NGEPMECL36ZQNW • EpiMap Enhancers33536621 ChromHMM Kidney Enhancer Show metadata Download track Track metadata identifier NGEPMECL36ZQNW data_source EpiMap_Enhancers Download track Download number_of_intervals 77,509 bp_covered 52,308,400 output_type enhancer chromatin states genome_build hg38 cell_type Kidney biosample_type Tissue biosample_term_id UBERON:0002113 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 740,539 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01128_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 11186548bf51a90910567f22d44b4c2c wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01128_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01128_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01128_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01128_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01128_18_CALLS_segments.bed.gz raw_file_md5 443f8c545781f11460b1216f09bdafba data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=left kidney female embryo (107 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01128;extended_md.donor.ids=ENCDO607LOS;extended_md.collated.donors=ENCDO607LOS;extended_md.accession=ENCSR953XJU;extended_md.biosample.ids=ENCBS313FHH;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=107;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap_Enhancers Kidney ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Tibial artery NGEPMEDBEEOX5D • EpiMap33536621 ChromHMM Tibial artery Chromatin states Show metadata Download track Track metadata identifier NGEPMEDBEEOX5D data_source EpiMap Download track Download number_of_intervals 394,582 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Tibial artery biosample_type Tissue biosample_term_id UBERON:0007610 tissue_category Blood Vessel encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,864,292 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01837_ENCODE_All_hg38.bed.gz processed_file_md5 665eee1ebb508d211cf9b2b44220fb57 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01837_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01837_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01837_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01837_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01837_18_CALLS_segments.bed.gz raw_file_md5 f84f3dfafb39ffc045c7eb76ecdce6f2 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=tibial artery female adult (53 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01837;extended_md.donor.ids=ENCDO793LXB;extended_md.collated.donors=ENCDO793LXB;extended_md.accession=ENCSR166VXF,ENCSR127ZSP,ENCSR543DAS,ENCSR233LCT,ENCSR080ISA;extended_md.biosample.ids=ENCBS721ZTH,ENCBS826SVC;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=53;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap Tibial artery ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Kidney NGEPMEDGNVTG7V • EpiMap33536621 ChromHMM Kidney Chromatin states Show metadata Download track Track metadata identifier NGEPMEDGNVTG7V data_source EpiMap Download track Download number_of_intervals 400,455 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Kidney biosample_type Tissue biosample_term_id UBERON:0002113 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,909,774 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01129_Roadmap_2021_All_hg38.bed.gz processed_file_md5 ca76c0c611b57b3fb3c5c3937ef56fa8 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01129_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01129_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01129_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01129_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01129_18_CALLS_segments.bed.gz raw_file_md5 c724235640b68689e2bd7b7b58a3b884 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=left kidney female embryo (110 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01129;extended_md.donor.ids=ENCDO087TLK;extended_md.collated.donors=ENCDO087TLK;extended_md.accession=ENCSR974TXT;extended_md.biosample.ids=ENCBS629UDA;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=110;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap Kidney ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Renal pelvis NGEPMEE6I33S33 • EpiMap33536621 ChromHMM Renal pelvis Chromatin states Show metadata Download track Track metadata identifier NGEPMEE6I33S33 data_source EpiMap Download track Download number_of_intervals 341,539 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Renal pelvis biosample_type Tissue biosample_term_id UBERON:0001224 tissue_category Urinary encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,353,510 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01534_Roadmap_2021_All_hg38.bed.gz processed_file_md5 7efd4c65ee8bff489d363aa68d18ec9c wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01534_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01534_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01534_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01534_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01534_18_CALLS_segments.bed.gz raw_file_md5 ab0500d95a7200886f6ba125f1a48938 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=right renal pelvis male embryo (120 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01534;extended_md.donor.ids=ENCDO327QNA;extended_md.collated.donors=ENCDO327QNA;extended_md.accession=ENCSR540PVZ;extended_md.biosample.ids=ENCBS855RFN;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=120;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap Renal pelvis ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Fibroblast NGEPMEEMHM46TY • EpiMap33536621 ChromHMM Fibroblast Chromatin states Show metadata Download track Track metadata identifier NGEPMEEMHM46TY data_source EpiMap Download track Download number_of_intervals 666,376 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 6,425,645 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00353_Roadmap_2015_All_hg38.bed.gz processed_file_md5 d257027bdfe48e8ef25e9b817f80cbe9 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00353_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00353_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00353_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00353_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00353_18_CALLS_segments.bed.gz raw_file_md5 3ebf44f7766640709714cce07338317d data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=foreskin fibroblast male newborn;tissue_of_origin=Foreskin;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00353;extended_md.donor.ids=ENCDO047TBB,ENCDO686OPO,ENCDO191CQJ,ENCDO666YUN,ENCDO232AAA;extended_md.collated.donors=ENCDO047TBB,ENCDO686OPO,ENCDO232AAA,ENCDO666YUN,ENCDO191CQJ;extended_md.accession=ENCSR000DUJ,ENCSR512BHQ,ENCSR344WLV,ENCSR417IEJ,ENCSR889OUV,ENCSR624YTO,ENCSR019ZRR,ENCSR000ENQ,ENCSR917QEH,ENCSR251UPG,ENCSR367HVD,ENCSR000EPP,ENCSR122IJJ,ENCSR285UTJ,ENCSR346DNL,ENCSR822ZIG,ENCSR621EXD,ENCSR786ESI,ENCSR079ZQI,ENCSR153LHP,ENCSR108NVQ,ENCSR813CFB,ENCSR000DWS;extended_md.biosample.ids=ENCBS148GEQ,ENCBS571IYT,ENCBS016QWL,ENCBS065ENC,ENCBS955MUX,ENCBS748WVA,ENCBS347RWF,ENCBS955MUX,ENCBS309AAA,ENCBS148GEQ,ENCBS016QWL,ENCBS612XXS,ENCBS271PJP,ENCBS135HGQ;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=newborn;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Integumentary life_stage Newborn track_name EpiMap Fibroblast ChromHMM consolidated chromatin states (bed9) [Life stage: Newborn] [Chromatin states]