Induced pluripotent stem cell NGADBTH4XOFYOA • ATACdb v1.03 ATAC-seq Induced pluripotent stem cell TFBS Show metadata identifier NGADBTH4XOFYOA data_source ATACdb_v1.03 Download track Download number_of_intervals 81,716 bp_covered 1,101,950 output_type transcription factor binding sites genome_build hg38 cell_type Induced pluripotent stem cell biosample_type Stem cell biosample_term_id EFO:0004905 tissue_category iPSC encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 2,878,059 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0768_hg38_motif_binding_sites.bed.gz processed_file_md5 9cf10d46e14f3386e6279a792bb3d9f0 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0768_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0768_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0768;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA18520;Cancer_Type=Other;Region_Number=29352;Length=12660.575 kb;GEO_SRA=SRR6412485;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/ system_category Stem Cell life_stage Unknown track_name ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
T47D NGADBTH6R3EZP3 • ATACdb v1.03 ATAC-seq T47D TFBS Show metadata identifier NGADBTH6R3EZP3 data_source ATACdb_v1.03 Download track Download number_of_intervals 50,876 bp_covered 682,326 output_type transcription factor binding sites genome_build hg38 cell_type T47D biosample_type Cell line biosample_term_id EFO:0001247 tissue_category Breast encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 1,533,885 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0946_hg38_motif_binding_sites.bed.gz processed_file_md5 91f56fbf7ec154b08502e5bb2a690fda wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0946_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0946_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0946;Biosample_Type=Cell Line;Tissue_Type=Breast;Biosample_Name=T47D;Cancer_Type=Breast cancer;Region_Number=13492;Length=4678.888 kb;GEO_SRA=SRR5800799;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org system_category Reproductive life_stage Unknown track_name ATACdb_v1.03 T47D ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Fibroblast NGADBTHDB5O5IN • ATACdb v1.03 ATAC-seq Fibroblast Accessible chromatin Show metadata identifier NGADBTHDB5O5IN data_source ATACdb_v1.03 Download track Download number_of_intervals 107,805 bp_covered 49,440,586 output_type accessible chromatin region genome_build hg38 cell_type Fibroblast biosample_type Not applicable biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 3,458,457 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0375_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 da38165e11531d143dddfdd96d8129d6 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0375_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0375_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0375.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0375.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 bf08035ac73147c57fe66a552eeeac6d data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0375;Biosample_Type=Other;Tissue_Type=Other;Biosample_Name=Fibroblast;Cancer_Type=Other;Region_Number=107900;Length=49468.146 kb;GEO_SRA=SRR5521294;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB system_category Integumentary life_stage Unknown track_name ATACdb_v1.03 Fibroblast ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
LNCAP NGADBTHLJLFXGJ • ATACdb v1.03 ATAC-seq LNCAP Accessible chromatin Show metadata identifier NGADBTHLJLFXGJ data_source ATACdb_v1.03 Download track Download number_of_intervals 602 bp_covered 282,379 output_type accessible chromatin region genome_build hg38 cell_type LNCAP biosample_type Cell line biosample_term_id EFO:0002071 tissue_category Male Reproductive encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 19,424 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1191_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 67f1ee09f248ecf9caf95c8800de3fc9 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1191_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1191_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1191.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1191.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 6d2943c57ce5116c585c410781e90686 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1191;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=LNCaP;Cancer_Type=Normal;Region_Number=609;Length=285.899 kb;GEO_SRA=GSM1708258;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILE system_category Reproductive life_stage Unknown track_name ATACdb_v1.03 LNCAP ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
CD4+ NGADBTHW6PELNY • ATACdb v1.03 ATAC-seq CD4+ Accessible chromatin Show metadata identifier NGADBTHW6PELNY data_source ATACdb_v1.03 Download track Download number_of_intervals 7,127 bp_covered 2,561,455 output_type accessible chromatin region genome_build hg38 cell_type CD4+ biosample_type Primary cell biosample_term_id CL:0000492 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 228,923 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1287_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 29be755d3462a513f0522828a8b8e412 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1287_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1287_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1287.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1287.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 b75b285560d8074142523128ffbbda62 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1287;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Leukemia;Region_Number=7151;Length=2566.067 kb;GEO_SRA=SRR1556366;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab. system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Naive T effector cell NGADBTI3BG6MLY • ATACdb v1.03 ATAC-seq Naive T effector cell Accessible chromatin Show metadata identifier NGADBTI3BG6MLY data_source ATACdb_v1.03 Download track Download number_of_intervals 40,999 bp_covered 22,666,834 output_type accessible chromatin region genome_build hg38 cell_type Naive T effector cell biosample_type Not applicable biosample_term_id Not available tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,376,826 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0306_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 81cfa683be1d42264067e87ff307892c wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0306_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0306_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0306.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0306.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 4b2d33c190759d1e99f40fce875d3d98 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0306;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Naive_Teffs;Cancer_Type=Normal;Region_Number=41098;Length=22722.634 kb;GEO_SRA=SRR7650837;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Naive T effector cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
H1-hESC NGADBTI5EFQLAS • ATACdb v1.03 ATAC-seq H1-hESC TFBS Show metadata identifier NGADBTI5EFQLAS data_source ATACdb_v1.03 Download track Download number_of_intervals 293,626 bp_covered 3,935,708 output_type transcription factor binding sites genome_build hg38 cell_type H1-hESC biosample_type Cell line biosample_term_id EFO:0003042 tissue_category Stem Cell encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 9,365,021 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1047_hg38_motif_binding_sites.bed.gz processed_file_md5 d9767d12cb3d2d1956e2c4da6148e718 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1047_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1047_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1047;Biosample_Type=Cell Line;Tissue_Type=Embryo;Biosample_Name=H1;Cancer_Type=Normal;Region_Number=58153;Length=33532.22 kb;GEO_SRA=SRR5007264;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FIL system_category Stem Cell life_stage Embryonic track_name ATACdb_v1.03 H1-hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic] [TFBS]
Neutrophil NGADBTIEYXW7GR • ATACdb v1.03 ATAC-seq Neutrophil Accessible chromatin Show metadata identifier NGADBTIEYXW7GR data_source ATACdb_v1.03 Download track Download number_of_intervals 794 bp_covered 324,038 output_type accessible chromatin region genome_build hg38 cell_type Neutrophil biosample_type Primary cell biosample_term_id CL:0000775 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 25,644 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1129_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 1c8d34373610d33f696cc93147526099 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1129_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1129_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1129.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1129.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 cf3f8d761ea93967d2ca835921069040 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1129;Biosample_Type=Primary Cell;Tissue_Type=Other;Biosample_Name=neutrophil;Cancer_Type=Normal;Region_Number=799;Length=329.487 kb;GEO_SRA=SRR2999327;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/G system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Neutrophil ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
HAP-1 NGADBTIGFXBWDF • ATACdb v1.03 ATAC-seq HAP-1 TFBS Show metadata identifier NGADBTIGFXBWDF data_source ATACdb_v1.03 Download track Download number_of_intervals 67,039 bp_covered 891,566 output_type transcription factor binding sites genome_build hg38 cell_type HAP-1 biosample_type Cell line biosample_term_id EFO:0007598 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 2,229,587 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0414_hg38_motif_binding_sites.bed.gz processed_file_md5 723ee27d16c305034e37ee4c92b310ad wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0414_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0414_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0414;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=HAP1;Cancer_Type=Leukemia;Region_Number=22770;Length=8904.307 kb;GEO_SRA=SRR6766912;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 HAP-1 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
CD4+ NGADBTJBVLBJFH • ATACdb v1.03 ATAC-seq CD4+ TFBS Show metadata identifier NGADBTJBVLBJFH data_source ATACdb_v1.03 Download track Download number_of_intervals 58,781 bp_covered 781,145 output_type transcription factor binding sites genome_build hg38 cell_type CD4+ biosample_type Primary cell biosample_term_id CL:0000492 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 1,836,805 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1253_hg38_motif_binding_sites.bed.gz processed_file_md5 c506f3e599577f74d62148bb50d18d3f wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1253_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1253_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1253;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Normal;Region_Number=12530;Length=5156.26 kb;GEO_SRA=SRR1556332;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.or system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 CD4+ ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
T regulatory cell NGADBTK6TOCKFO • ATACdb v1.03 ATAC-seq T regulatory cell TFBS Show metadata identifier NGADBTK6TOCKFO data_source ATACdb_v1.03 Download track Download number_of_intervals 127,390 bp_covered 1,700,150 output_type transcription factor binding sites genome_build hg38 cell_type T regulatory cell biosample_type Cell line biosample_term_id CL:0000815 tissue_category Immune encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 4,073,415 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0926_hg38_motif_binding_sites.bed.gz processed_file_md5 74897ce6731b531e035d9cb177ee3be4 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0926_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0926_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0926;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=Treg;Cancer_Type=Other;Region_Number=23477;Length=14011.275 kb;GEO_SRA=SRR5831536;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FI system_category Lymphatic life_stage Unknown track_name ATACdb_v1.03 T regulatory cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Pancreatic islets NGADBTLB7F3KJ5 • ATACdb v1.03 ATAC-seq Pancreatic islets Accessible chromatin Show metadata identifier NGADBTLB7F3KJ5 data_source ATACdb_v1.03 Download track Download number_of_intervals 32,299 bp_covered 17,986,417 output_type accessible chromatin region genome_build hg38 cell_type Pancreatic islets biosample_type Tissue biosample_term_id UBERON:0000006 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,062,055 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1213_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 f8c27aa85e56363ac46559ff0f86d378 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1213_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1213_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1213.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1213.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 bee5968a12facfc2c7ab61f316bc1af5 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1213;Biosample_Type=Tissue;Tissue_Type=Pancreas;Biosample_Name=Pancreatic islet;Cancer_Type=Normal;Region_Number=32375;Length=18050.837 kb;GEO_SRA=GSM1978246;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwangla system_category Digestive life_stage Unknown track_name ATACdb_v1.03 Pancreatic islets ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Neural cell NGADBTLLIDFR2B • ATACdb v1.03 ATAC-seq Neural cell Accessible chromatin Show metadata identifier NGADBTLLIDFR2B data_source ATACdb_v1.03 Download track Download number_of_intervals 15,493 bp_covered 7,122,753 output_type accessible chromatin region genome_build hg38 cell_type Neural cell biosample_type Stem cell biosample_term_id CL:0002319 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 500,332 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0969_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 b9b49b6148b470c99b7003baeeed4c75 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0969_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0969_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0969.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0969.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 445b7117e43e8d3d4577fd97282c2d6d data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0969;Biosample_Type=Stem Cell;Tissue_Type=Cortical Neurons;Biosample_Name=Cortical NSC;Cancer_Type=Other;Region_Number=15524;Length=7128.382 kb;GEO_SRA=SRR2097508;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanw system_category Nervous life_stage Unknown track_name ATACdb_v1.03 Neural cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
HCASMC NGADBTLN6OUHTS • ATACdb v1.03 ATAC-seq HCASMC Accessible chromatin Show metadata identifier NGADBTLN6OUHTS data_source ATACdb_v1.03 Download track Download number_of_intervals 14,560 bp_covered 6,407,915 output_type accessible chromatin region genome_build hg38 cell_type HCASMC biosample_type Not applicable biosample_term_id CL:0002592 tissue_category Blood Vessel encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 485,549 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1200_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 e7b0febab528c56aa4c342e29ce77569 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1200_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1200_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1200.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1200.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 a9dc66293ce1068073ff354925fb9084 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1200;Biosample_Type=Other;Tissue_Type=Other;Biosample_Name=HCASMC;Cancer_Type=Hemoglobinopathies;Region_Number=14591;Length=6413.956 kb;GEO_SRA=GSM1939570;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.o system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 HCASMC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
HFF NGADBTMB3PZZRM • ATACdb v1.03 ATAC-seq HFF Accessible chromatin Show metadata identifier NGADBTMB3PZZRM data_source ATACdb_v1.03 Download track Download number_of_intervals 69,821 bp_covered 29,354,304 output_type accessible chromatin region genome_build hg38 cell_type HFF biosample_type Cell line biosample_term_id CL:1001608 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 2,292,880 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1083_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 b428c2c9e5ad2c644613aa059a2049c6 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1083_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1083_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1083.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1083.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 6e1769171be9484d791ce337fd378999 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1083;Biosample_Type=Cell Line;Tissue_Type=Foreskin;Biosample_Name=HFF;Cancer_Type=Normal;Region_Number=69878;Length=29377.264 kb;GEO_SRA=SRR3295019;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB system_category Integumentary life_stage Unknown track_name ATACdb_v1.03 HFF ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
U2OS NGADBTMIZ6OJDN • ATACdb v1.03 ATAC-seq U2OS TFBS Show metadata identifier NGADBTMIZ6OJDN data_source ATACdb_v1.03 Download track Download number_of_intervals 2,661 bp_covered 36,306 output_type transcription factor binding sites genome_build hg38 cell_type U2OS biosample_type Cell line biosample_term_id EFO:0002869 tissue_category Bone encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 73,754 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0388_hg38_motif_binding_sites.bed.gz processed_file_md5 9bcc86ea0b4d3ebbaaf0049130199f43 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0388_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0388_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0388;Biosample_Type=Cell Line;Tissue_Type=Bone;Biosample_Name=U2OS;Cancer_Type=Osteosarcoma;Region_Number=1074;Length=513.128 kb;GEO_SRA=SRR7699133;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB system_category Skeletal life_stage Unknown track_name ATACdb_v1.03 U2OS ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
CCRF-CEM NGADBTMK6G2IOY • ATACdb v1.03 ATAC-seq CCRF-CEM Accessible chromatin Show metadata identifier NGADBTMK6G2IOY data_source ATACdb_v1.03 Download track Download number_of_intervals 20,873 bp_covered 13,276,504 output_type accessible chromatin region genome_build hg38 cell_type CCRF-CEM biosample_type Cell line biosample_term_id NCIT:C117114 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 711,609 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0727_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 ce250148712c5bb3d16fc0899a8149ee wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0727_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0727_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0727.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0727.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 401a7d28889db80d0b8653dd1a6f8768 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0727;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=CCRF-CEM;Cancer_Type=Cultured cancer;Region_Number=20918;Length=13291.045 kb;GEO_SRA=SRR5831756;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwangl system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 CCRF-CEM ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Hematopoietic stem cell NGADBTMNXSFZCB • ATACdb v1.03 ATAC-seq Hematopoietic stem cell Accessible chromatin Show metadata identifier NGADBTMNXSFZCB data_source ATACdb_v1.03 Download track Download number_of_intervals 4,803 bp_covered 1,801,485 output_type accessible chromatin region genome_build hg38 cell_type Hematopoietic stem cell biosample_type Stem cell biosample_term_id CL:0000037 tissue_category Stem Cell encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 152,217 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1484_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 4a8d99eee5c4dc199808f9a3c9913d0d wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1484_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1484_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1484.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1484.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 f963a6526aee9c554a521d544c9a333b data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1484;Biosample_Type=Primary Cell;Tissue_Type=Other;Biosample_Name=primary hematopoietic cell;Cancer_Type=Other;Region_Number=4833;Length=1825.257 kb;GEO_SRA=SRR7246328;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.l system_category Stem Cell life_stage Unknown track_name ATACdb_v1.03 Hematopoietic stem cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
CM CD8+ T cell NGADBTMYDOROOL • ATACdb v1.03 ATAC-seq CM CD8+ T cell Accessible chromatin Show metadata identifier NGADBTMYDOROOL data_source ATACdb_v1.03 Download track Download number_of_intervals 60,677 bp_covered 26,485,392 output_type accessible chromatin region genome_build hg38 cell_type CM CD8+ T cell biosample_type Not applicable biosample_term_id CL:0000907 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,988,761 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0209_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 c7715f8afb48d413c781705d65e109c1 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0209_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0209_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0209.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0209.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 9dbb1bcde21ad83560c7edab374578ed data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0209;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Central_memory_CD8pos_T;Cancer_Type=Normal;Region_Number=60809;Length=26562.608 kb;GEO_SRA=SRR7650739;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwan system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 CM CD8+ T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Neuron NGADBTN26J26B6 • ATACdb v1.03 ATAC-seq Neuron Accessible chromatin Show metadata identifier NGADBTN26J26B6 data_source ATACdb_v1.03 Download track Download number_of_intervals 12,645 bp_covered 6,603,297 output_type accessible chromatin region genome_build hg38 cell_type Neuron biosample_type Induced pluripotent stem cell line biosample_term_id CL:0000540 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 411,388 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0068_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 5d638084f1412ae081147fbe9ce04143 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0068_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0068_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0068.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0068.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 e50f309da06e5ea0d5b5d9db8b4ebe07 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0068;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Forebrain;Biosample_Name=Forebrain neurons;Cancer_Type=Normal;Region_Number=12677;Length=6619.498 kb;GEO_SRA=SRR5417032;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledg system_category Nervous life_stage Unknown track_name ATACdb_v1.03 Neuron ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]