consolidated • Muscle NGEPMFS3FB3YH3 • EpiMap Enhancers33536621 ChromHMM Muscle Enhancer Show metadata Download track Track metadata identifier NGEPMFS3FB3YH3 data_source EpiMap_Enhancers Download track Download number_of_intervals 93,295 bp_covered 64,688,600 output_type enhancer chromatin states genome_build hg38 cell_type Muscle biosample_type Tissue biosample_term_id NCIT:C13056 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 886,152 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01310_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 862fd0f9a89381b17834046d880a37f3 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01310_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01310_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01310_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01310_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01310_18_CALLS_segments.bed.gz raw_file_md5 d27037a5042b0976a442df0fe7e235b0 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=muscle of back male embryo (101 day);tissue_of_origin=Back;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01310;extended_md.donor.ids=ENCDO148CGW;extended_md.collated.donors=ENCDO148CGW;extended_md.accession=ENCSR174GXG;extended_md.biosample.ids=ENCBS136EGD;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=101;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Embryonic track_name EpiMap_Enhancers Muscle ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • A549 NGEPMFSY5XZUPV • EpiMap Enhancers33536621 ChromHMM A549 Enhancer Show metadata Download track Track metadata identifier NGEPMFSY5XZUPV data_source EpiMap_Enhancers Download track Download number_of_intervals 137,773 bp_covered 115,201,200 output_type enhancer chromatin states genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,254,880 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00017_GGR_Enh_hg38.bed.gz processed_file_md5 b626ce6cdc1943373e54e5f197c9ffd8 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00017_GGR_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00017_GGR_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00017_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00017_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00017_18_CALLS_segments.bed.gz raw_file_md5 d2a4b5e0bc96951a73c22ef9332168bb data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=A549 treated with 100 nM dexamethasone for 10 minutes;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00017;extended_md.donor.ids=ENCDO000AAZ;extended_md.collated.donors=ENCDO000AAZ;extended_md.accession=ENCSR027BPE;extended_md.biosample.ids=ENCBS287PYF,ENCBS777YGA,ENCBS653LWC;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=58;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name EpiMap_Enhancers A549 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • B cell NGEPMFTDZ6GJL6 • EpiMap33536621 ChromHMM B cell Chromatin states Show metadata Download track Track metadata identifier NGEPMFTDZ6GJL6 data_source EpiMap Download track Download number_of_intervals 499,754 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type B cell biosample_type Primary cell biosample_term_id CL:0000236 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,890,497 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00100_Roadmap_2015_All_hg38.bed.gz processed_file_md5 524360e0f1bb66495c64dfe74fe21621 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00100_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00100_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00100_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00100_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00100_18_CALLS_segments.bed.gz raw_file_md5 9aa833a7fbc693d49f2dfc4758417869 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=B cell male adult (21 year);tissue_of_origin=Blood;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00100;extended_md.donor.ids=ENCDO190HXC;extended_md.collated.donors=ENCDO190HXC;extended_md.accession=ENCSR816NKX,ENCSR404MOX,ENCSR214VUB,ENCSR890QGK,ENCSR381PXW;extended_md.biosample.ids=ENCBS469TSJ;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=21;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap B cell ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Mucosa NGEPMFTLPTIYJI • EpiMap Enhancers33536621 ChromHMM Mucosa Enhancer Show metadata Download track Track metadata identifier NGEPMFTLPTIYJI data_source EpiMap_Enhancers Download track Download number_of_intervals 173,021 bp_covered 124,523,000 output_type enhancer chromatin states genome_build hg38 cell_type Mucosa biosample_type Tissue biosample_term_id UBERON:0000344 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,594,258 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01284_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 052e162cd8173a06a886b4740f4dda34 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01284_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01284_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01284_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01284_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01284_18_CALLS_segments.bed.gz raw_file_md5 8c8324da4de79ffa3cbb16d88068fdad data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=mucosa of stomach male adult (59 years);tissue_of_origin=Stomach;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01284;extended_md.donor.ids=ENCDO895TFL;extended_md.collated.donors=ENCDO895TFL;extended_md.accession=ENCSR384LKH,ENCSR083QRE,ENCSR368YAQ,ENCSR770GNM,ENCSR438BEX,ENCSR005LTG;extended_md.biosample.ids=ENCBS869IME;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=59;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Adult track_name EpiMap_Enhancers Mucosa ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Small intestine NGEPMFUBSU666F • EpiMap Enhancers33536621 ChromHMM Small intestine Enhancer Show metadata Download track Track metadata identifier NGEPMFUBSU666F data_source EpiMap_Enhancers Download track Download number_of_intervals 86,448 bp_covered 58,168,400 output_type enhancer chromatin states genome_build hg38 cell_type Small intestine biosample_type Tissue biosample_term_id UBERON:0002108 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 816,839 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01592_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 bce14abeb704e18025609fbef42fe86e wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01592_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01592_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01592_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01592_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01592_18_CALLS_segments.bed.gz raw_file_md5 02d9d106c107b0c4798f2a7c7acf08fb data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=small intestine female embryo (108 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01592;extended_md.donor.ids=ENCDO012PVK;extended_md.collated.donors=ENCDO012PVK;extended_md.accession=ENCSR502NDK;extended_md.biosample.ids=ENCBS529UES;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=108;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name EpiMap_Enhancers Small intestine ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Lung NGEPMFWTMDANRO • EpiMap Enhancers33536621 ChromHMM Lung Enhancer Show metadata Download track Track metadata identifier NGEPMFWTMDANRO data_source EpiMap_Enhancers Download track Download number_of_intervals 80,680 bp_covered 67,298,600 output_type enhancer chromatin states genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 752,406 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01870_ENCODE_Enh_hg38.bed.gz processed_file_md5 e9c5b3070775501f71f134acc6104b4d wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01870_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01870_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01870_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01870_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01870_18_CALLS_segments.bed.gz raw_file_md5 e98170bb3502f912168852a9f0701d8b data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=upper lobe of left lung female adult (53 years);tissue_of_origin=Upper lobe;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01870;extended_md.donor.ids=ENCDO793LXB;extended_md.collated.donors=ENCDO793LXB;extended_md.accession=ENCSR738SXD,ENCSR820WNB,ENCSR869GBP,ENCSR208WDY,ENCSR859MXQ;extended_md.biosample.ids=ENCBS684YJH,ENCBS897QTA;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=53;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name EpiMap_Enhancers Lung ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Peripheral blood mononuclear cell NGEPMFWZMPAYHP • EpiMap33536621 ChromHMM Peripheral blood mononuclear cell Chromatin states Show metadata Download track Track metadata identifier NGEPMFWZMPAYHP data_source EpiMap Download track Download number_of_intervals 327,311 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Peripheral blood mononuclear cell biosample_type Primary cell biosample_term_id CL:2000001 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,169,341 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01423_Roadmap_2015_All_hg38.bed.gz processed_file_md5 21fb83be0fb128d34ec20f669f927084 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01423_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01423_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01423_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01423_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01423_18_CALLS_segments.bed.gz raw_file_md5 8ff1ce20b37aa1ea6c53d755f11dfcd7 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=peripheral blood mononuclear cell male adult (32 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01423;extended_md.donor.ids=ENCDO688UPE;extended_md.collated.donors=ENCDO688UPE;extended_md.accession=ENCSR482QXO,ENCSR866UQO,ENCSR980XMX,ENCSR162MGR,ENCSR368YPC,ENCSR615HXA;extended_md.biosample.ids=ENCBS558KIK;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=32;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap Peripheral blood mononuclear cell ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • RWPE1 NGEPMFX6DEUYEA • EpiMap Enhancers33536621 ChromHMM RWPE1 Enhancer Show metadata Download track Track metadata identifier NGEPMFX6DEUYEA data_source EpiMap_Enhancers Download track Download number_of_intervals 93,711 bp_covered 65,483,600 output_type enhancer chromatin states genome_build hg38 cell_type RWPE1 biosample_type Cell line biosample_term_id EFO:0002323 tissue_category Male Reproductive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 868,832 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01538_ENCODE_Enh_hg38.bed.gz processed_file_md5 b137ba52693fc88cfd2be5a8d3cda1ac wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01538_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01538_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01538_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01538_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01538_18_CALLS_segments.bed.gz raw_file_md5 42ca8cadea7bec9299b77ba8ce48aae1 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=RWPE1;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01538;extended_md.donor.ids=ENCDO000ADM;extended_md.collated.donors=ENCDO000ADM;extended_md.accession=ENCSR000ELP,ENCSR203KEU;extended_md.biosample.ids=ENCBS124FCL,ENCBS263AAA,ENCBS192LWI;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=54;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0002323;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap_Enhancers RWPE1 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Thymus NGEPMFXA4XWEHS • EpiMap Enhancers33536621 ChromHMM Thymus Enhancer Show metadata Download track Track metadata identifier NGEPMFXA4XWEHS data_source EpiMap_Enhancers Download track Download number_of_intervals 113,499 bp_covered 94,142,200 output_type enhancer chromatin states genome_build hg38 cell_type Thymus biosample_type Tissue biosample_term_id UBERON:0002370 tissue_category Immune Organ encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,076,568 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01828_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 9854a181206d3e132445637e0f28c104 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01828_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01828_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01828_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01828_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01828_18_CALLS_segments.bed.gz raw_file_md5 07b12003634ccfea5833dcbc6dfe1780 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=thymus male embryo (113 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01828;extended_md.donor.ids=ENCDO608XKS;extended_md.collated.donors=ENCDO608XKS;extended_md.accession=ENCSR544KDB;extended_md.biosample.ids=ENCBS664ZDN;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=113;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Lymphatic life_stage Embryonic track_name EpiMap_Enhancers Thymus ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • CD4+ CD25+ alpha-beta Treg NGEPMFXBZVZABV • EpiMap Enhancers33536621 ChromHMM CD4+ CD25+ alpha-beta Treg Enhancer Show metadata Download track Track metadata identifier NGEPMFXBZVZABV data_source EpiMap_Enhancers Download track Download number_of_intervals 99,270 bp_covered 73,712,000 output_type enhancer chromatin states genome_build hg38 cell_type CD4+ CD25+ alpha-beta Treg biosample_type Primary cell biosample_term_id CL:0000792 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 942,587 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00192_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 ee9f206b234d72ad622f3763e5f33900 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00192_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00192_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00192_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00192_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00192_18_CALLS_segments.bed.gz raw_file_md5 e99052cada4177ec3c987abd98cbe07b data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=CD4+CD25+alpha-beta regulatory T cell;tissue_of_origin=Blood;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00192;extended_md.donor.ids=ENCDO194EHQ,ENCDO779YRY,ENCDO194EHQ;extended_md.collated.donors=ENCDO779YRY,ENCDO194EHQ,ENCDO194EHQ;extended_md.accession=ENCSR579DZQ,ENCSR860MYX,ENCSR523BMU,ENCSR577GVS,ENCSR203GEP,ENCSR435WPP;extended_md.biosample.ids=ENCBS882FFC,ENCBS394HEM,ENCBS882FFC;extended_md.assay=ChIP-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name EpiMap_Enhancers CD4+ CD25+ alpha-beta Treg ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]
consolidated • Muscle NGEPMFXISLO77Z • EpiMap33536621 ChromHMM Muscle Chromatin states Show metadata Download track Track metadata identifier NGEPMFXISLO77Z data_source EpiMap Download track Download number_of_intervals 376,101 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Muscle biosample_type Tissue biosample_term_id NCIT:C13056 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,681,789 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01289_Roadmap_2021_All_hg38.bed.gz processed_file_md5 1fc92dec01e971c84bdd88122b7b7fd5 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01289_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01289_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01289_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01289_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01289_18_CALLS_segments.bed.gz raw_file_md5 7e24e657dc8a4ef135837b15a22a5e4f data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=muscle of arm embryo (101 day);tissue_of_origin=Arm;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01289;extended_md.donor.ids=ENCDO072LQF;extended_md.collated.donors=ENCDO072LQF;extended_md.accession=ENCSR826ERZ;extended_md.biosample.ids=ENCBS180RZG;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=101;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Embryonic track_name EpiMap Muscle ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Lung NGEPMFYQ6FLBVE • EpiMap33536621 ChromHMM Lung Chromatin states Show metadata Download track Track metadata identifier NGEPMFYQ6FLBVE data_source EpiMap Download track Download number_of_intervals 406,282 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,969,225 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01141_Roadmap_2021_All_hg38.bed.gz processed_file_md5 d64722bcf19b8f73a40d47ee0b9bef4f wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01141_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01141_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01141_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01141_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01141_18_CALLS_segments.bed.gz raw_file_md5 c07b8a9459b926fb9a147bc8d634ab39 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=left lung female embryo (117 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01141;extended_md.donor.ids=ENCDO453STB;extended_md.collated.donors=ENCDO453STB;extended_md.accession=ENCSR541AVF;extended_md.biosample.ids=ENCBS287DAY;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=117;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Embryonic track_name EpiMap Lung ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Lung NGEPMFYU7JHAGA • EpiMap Enhancers33536621 ChromHMM Lung Enhancer Show metadata Download track Track metadata identifier NGEPMFYU7JHAGA data_source EpiMap_Enhancers Download track Download number_of_intervals 113,885 bp_covered 79,479,600 output_type enhancer chromatin states genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,068,229 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01528_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 96979faeeb8897bdab9487faff6e2df5 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01528_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01528_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01528_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01528_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01528_18_CALLS_segments.bed.gz raw_file_md5 8d07ecfaf3f140d6643f741bb683f48d data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=right lung male embryo (115 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01528;extended_md.donor.ids=ENCDO816OTW;extended_md.collated.donors=ENCDO816OTW;extended_md.accession=ENCSR228BOM;extended_md.biosample.ids=ENCBS391UEN;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=115;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Embryonic track_name EpiMap_Enhancers Lung ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • NAMALWA NGEPMFYXR37AJR • EpiMap33536621 ChromHMM NAMALWA Chromatin states Show metadata Download track Track metadata identifier NGEPMFYXR37AJR data_source EpiMap Download track Download number_of_intervals 456,523 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type NAMALWA biosample_type Cell line biosample_term_id EFO:0002246 tissue_category Immune encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,459,430 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01351_ENCODE_All_hg38.bed.gz processed_file_md5 99c99ae57fe6297ca8e13ab0b8eb0941 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01351_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01351_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01351_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01351_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01351_18_CALLS_segments.bed.gz raw_file_md5 06411c292d1940f1fc25111ea15a69c8 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=NAMALWA treated with Sendai virus for 2 hours;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01351;extended_md.donor.ids=ENCDO993XLR;extended_md.collated.donors=ENCDO993XLR;extended_md.accession=ENCSR301OGM;extended_md.biosample.ids=ENCBS040JOT,ENCBS566UPJ;extended_md.assay=DNase-seq;extended_md.life.stage=child;extended_md.age=3;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0002246;is_hg38_lifted=no system_category Lymphatic life_stage Child track_name EpiMap NAMALWA ChromHMM consolidated chromatin states (bed9) [Life stage: Child] [Chromatin states]
consolidated • Lung NGEPMFZGTHQ4XL • EpiMap33536621 ChromHMM Lung Chromatin states Show metadata Download track Track metadata identifier NGEPMFZGTHQ4XL data_source EpiMap Download track Download number_of_intervals 436,720 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,270,573 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01203_Roadmap_2021_All_hg38.bed.gz processed_file_md5 59a62561ad99bde7b4c20bf67a86ed32 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01203_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01203_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01203_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01203_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01203_18_CALLS_segments.bed.gz raw_file_md5 b1424693e79bf06e67df208af8aa15c7 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=lung male embryo (108 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01203;extended_md.donor.ids=ENCDO177SBN;extended_md.collated.donors=ENCDO177SBN;extended_md.accession=ENCSR076YBB;extended_md.biosample.ids=ENCBS015WUS;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=108;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Embryonic track_name EpiMap Lung ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Adipose NGEPMFZR6MFMQY • EpiMap Enhancers33536621 ChromHMM Adipose Enhancer Show metadata Download track Track metadata identifier NGEPMFZR6MFMQY data_source EpiMap_Enhancers Download track Download number_of_intervals 210,511 bp_covered 159,650,400 output_type enhancer chromatin states genome_build hg38 cell_type Adipose biosample_type Tissue biosample_term_id NCIT:C12472 tissue_category Adipose encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,950,325 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01668_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 0987ab821b60ab30e8946a2bdf489e95 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01668_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01668_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01668_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01668_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01668_18_CALLS_segments.bed.gz raw_file_md5 e62c7798976eee1a816200375fa8f71f data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=subcutaneous abdominal adipose tissue nuclear fraction female adult (59 years);tissue_of_origin=Subcutaneous abdominal;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01668;extended_md.donor.ids=ENCDO477HWZ;extended_md.collated.donors=ENCDO477HWZ;extended_md.accession=ENCSR295LHC,ENCSR632QHJ,ENCSR146JLC,ENCSR923IIU,ENCSR318DAP,ENCSR345PSR;extended_md.biosample.ids=ENCBS635CVM;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=59;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name EpiMap_Enhancers Adipose ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Spleen NGEPMFZUNQDIO2 • EpiMap Enhancers33536621 ChromHMM Spleen Enhancer Show metadata Download track Track metadata identifier NGEPMFZUNQDIO2 data_source EpiMap_Enhancers Download track Download number_of_intervals 85,596 bp_covered 98,901,600 output_type enhancer chromatin states genome_build hg38 cell_type Spleen biosample_type Tissue biosample_term_id UBERON:0002106 tissue_category Immune Organ encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 803,983 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01633_ENCODE_Enh_hg38.bed.gz processed_file_md5 61c91eafbfc635af7c24719d32a8cb5c wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01633_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01633_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01633_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01633_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01633_18_CALLS_segments.bed.gz raw_file_md5 3878548825fd087609725686c90fc9ee data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=spleen male adult (54 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01633;extended_md.donor.ids=ENCDO451RUA;extended_md.collated.donors=ENCDO451RUA;extended_md.accession=ENCSR850YHJ;extended_md.biosample.ids=ENCBS952SZW;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=54;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name EpiMap_Enhancers Spleen ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • LHCN-M2 NGEPMG2AGPDDWT • EpiMap33536621 ChromHMM LHCN-M2 Chromatin states Show metadata Download track Track metadata identifier NGEPMG2AGPDDWT data_source EpiMap Download track Download number_of_intervals 506,499 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type LHCN-M2 biosample_type Cell line biosample_term_id EFO:0005714 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,930,843 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01155_ENCODE_All_hg38.bed.gz processed_file_md5 e6062006769c19366c3409d2b8e43856 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01155_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01155_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01155_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01155_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01155_18_CALLS_segments.bed.gz raw_file_md5 2648c6ed0bd47df0fd881ea0be4c1143 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=LHCN-M2;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01155;extended_md.donor.ids=ENCDO000ACW;extended_md.collated.donors=ENCDO000ACW;extended_md.accession=ENCSR000EPE;extended_md.biosample.ids=ENCBS810TWL,ENCBS233AAA;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=41;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0005714;is_hg38_lifted=no system_category Muscular life_stage Adult track_name EpiMap LHCN-M2 ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Parathyroid adenoma NGEPMG2GL4D73G • EpiMap Enhancers33536621 ChromHMM Parathyroid adenoma Enhancer Show metadata Download track Track metadata identifier NGEPMG2GL4D73G data_source EpiMap_Enhancers Download track Download number_of_intervals 87,345 bp_covered 54,080,200 output_type enhancer chromatin states genome_build hg38 cell_type Parathyroid adenoma biosample_type Tissue biosample_term_id Not available tissue_category Endocrine encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 816,373 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01411_ENCODE_Enh_hg38.bed.gz processed_file_md5 a2705f0df87fe92fd87f86b41f483897 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01411_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01411_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01411_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01411_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01411_18_CALLS_segments.bed.gz raw_file_md5 1386cffc3b26434cb538e65977372ff4 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=Parathyroid adenoma male adult (62 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01411;extended_md.donor.ids=ENCDO952UGS;extended_md.collated.donors=ENCDO952UGS;extended_md.accession=ENCSR619AAK,ENCSR481IYI,ENCSR434NUA,ENCSR256KRN,ENCSR688SJY,ENCSR033OKS,ENCSR106GXJ,ENCSR370KYM,ENCSR735SLW,ENCSR492DBQ;extended_md.biosample.ids=ENCBS785UMH;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=62;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=NTR:0001226;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name EpiMap_Enhancers Parathyroid adenoma ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Brain NGEPMG2J23DPZP • EpiMap33536621 ChromHMM Brain Chromatin states Show metadata Download track Track metadata identifier NGEPMG2J23DPZP data_source EpiMap Download track Download number_of_intervals 415,238 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Brain biosample_type Tissue biosample_term_id UBERON:0000955 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,061,305 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00133_Roadmap_2021_All_hg38.bed.gz processed_file_md5 9425fc84453f6f19faf28c898146e8c9 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00133_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00133_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00133_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00133_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00133_18_CALLS_segments.bed.gz raw_file_md5 6762f1d3227f545b94b0540145ad5354 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=brain female embryo (142 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00133;extended_md.donor.ids=ENCDO175TGB;extended_md.collated.donors=ENCDO175TGB;extended_md.accession=ENCSR187PYY;extended_md.biosample.ids=ENCBS150ZQT;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=142;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Nervous life_stage Embryonic track_name EpiMap Brain ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]