consolidated • Medulla oblongata NGEPMG3FKQ33OX • EpiMap Enhancers33536621 ChromHMM Medulla oblongata Enhancer Show metadata Download track Track metadata identifier NGEPMG3FKQ33OX data_source EpiMap_Enhancers Download track Download number_of_intervals 63,558 bp_covered 44,464,600 output_type enhancer chromatin states genome_build hg38 cell_type Medulla oblongata biosample_type Tissue biosample_term_id UBERON:0001896 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 612,984 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01250_ENCODE_Enh_hg38.bed.gz processed_file_md5 365a0f088141d6d26a34dd09177d3c07 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01250_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01250_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01250_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01250_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01250_18_CALLS_segments.bed.gz raw_file_md5 20db4cdfa3a28cb0f12a87147374fafb data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=medulla oblongata male adult (78 years) and male adult (84 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01250;extended_md.donor.ids=ENCDO317XRR,ENCDO240JUB;extended_md.collated.donors=ENCDO317XRR,ENCDO240JUB;extended_md.accession=ENCSR224IYD;extended_md.biosample.ids=ENCBS433NBX,ENCBS799XTS;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=78,84;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Nervous life_stage Adult track_name EpiMap_Enhancers Medulla oblongata ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Brain NGEPMG52AK6GPI • EpiMap Enhancers33536621 ChromHMM Brain Enhancer Show metadata Download track Track metadata identifier NGEPMG52AK6GPI data_source EpiMap_Enhancers Download track Download number_of_intervals 82,681 bp_covered 57,135,200 output_type enhancer chromatin states genome_build hg38 cell_type Brain biosample_type Tissue biosample_term_id UBERON:0000955 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 798,088 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00129_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 f8998bd76c379fb106e0b0916c20b0a5 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00129_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00129_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00129_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00129_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00129_18_CALLS_segments.bed.gz raw_file_md5 4f23324aafc67116b7b1266fee84ad16 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=brain female embryo (105 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00129;extended_md.donor.ids=ENCDO863KZW;extended_md.collated.donors=ENCDO863KZW;extended_md.accession=ENCSR820XRX;extended_md.biosample.ids=ENCBS973YEN;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=105;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Nervous life_stage Embryonic track_name EpiMap_Enhancers Brain ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • GM10248 NGEPMG55S2RKWA • EpiMap33536621 ChromHMM GM10248 Chromatin states Show metadata Download track Track metadata identifier NGEPMG55S2RKWA data_source EpiMap Download track Download number_of_intervals 488,230 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type GM10248 biosample_type Cell line biosample_term_id EFO:0005334 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,772,032 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00404_ENCODE_All_hg38.bed.gz processed_file_md5 d245c3d961565a7ac98bdff335cbfd28 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00404_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00404_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00404_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00404_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00404_18_CALLS_segments.bed.gz raw_file_md5 7542a44f037b079d50a5fe3114af1c49 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=GM10248;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00404;extended_md.donor.ids=ENCDO000ABI;extended_md.collated.donors=ENCDO000ABI;extended_md.accession=ENCSR000EJB;extended_md.biosample.ids=ENCBS183AAA;extended_md.assay=DNase-seq;extended_md.life.stage=unknown;extended_md.age=32;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0005334;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name EpiMap GM10248 ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • Kidney NGEPMG5A75PGP2 • EpiMap Enhancers33536621 ChromHMM Kidney Enhancer Show metadata Download track Track metadata identifier NGEPMG5A75PGP2 data_source EpiMap_Enhancers Download track Download number_of_intervals 84,609 bp_covered 54,314,600 output_type enhancer chromatin states genome_build hg38 cell_type Kidney biosample_type Tissue biosample_term_id UBERON:0002113 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 807,589 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01079_ENCODE_Enh_hg38.bed.gz processed_file_md5 ab956765540e9779de9fc66af4038fce wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01079_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01079_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01079_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01079_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01079_18_CALLS_segments.bed.gz raw_file_md5 d8bcc21968d97a4d60bebb71b21b16ff data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=kidney embryo (80 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01079;extended_md.donor.ids=ENCDO662IIE;extended_md.collated.donors=ENCDO662IIE;extended_md.accession=ENCSR066WZJ;extended_md.biosample.ids=ENCBS444KCH;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=80;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap_Enhancers Kidney ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Fibroblast NGEPMG5NOL2AXC • EpiMap Enhancers33536621 ChromHMM Fibroblast Enhancer Show metadata Download track Track metadata identifier NGEPMG5NOL2AXC data_source EpiMap_Enhancers Download track Download number_of_intervals 150,666 bp_covered 105,021,400 output_type enhancer chromatin states genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Heart encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,405,223 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00167_ENCODE_Enh_hg38.bed.gz processed_file_md5 610432dc084c5cfcb02a25f3ec4f4140 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00167_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00167_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00167_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00167_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00167_18_CALLS_segments.bed.gz raw_file_md5 7efb47b75ed1a6cb8c829f68d1e64fcb data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=cardiac fibroblast female adult;tissue_of_origin=Cardiac;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00167;extended_md.donor.ids=ENCDO230AAA;extended_md.collated.donors=ENCDO230AAA;extended_md.accession=ENCSR000DTH,ENCSR000ENI;extended_md.biosample.ids=ENCBS307AAA,ENCBS032BLA,ENCBS501ROB;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap_Enhancers Fibroblast ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • SW480 NGEPMG5ZCWFGRL • EpiMap33536621 ChromHMM SW480 Chromatin states Show metadata Download track Track metadata identifier NGEPMG5ZCWFGRL data_source EpiMap Download track Download number_of_intervals 435,196 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type SW480 biosample_type Cell line biosample_term_id EFO:0002083 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,255,319 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01682_ENCODE_All_hg38.bed.gz processed_file_md5 8ae305cfbcce6e97cfc0b502f273f67f wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01682_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01682_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01682_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01682_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01682_18_CALLS_segments.bed.gz raw_file_md5 a3caa39d5039a542a8cc42d77c3f4857 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=SW480;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01682;extended_md.donor.ids=ENCDO499CXJ;extended_md.collated.donors=ENCDO499CXJ;extended_md.accession=ENCSR217SET;extended_md.biosample.ids=ENCBS211HGL,ENCBS421AQW;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=50;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0002083;is_hg38_lifted=no system_category Digestive life_stage Adult track_name EpiMap SW480 ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • A549 NGEPMG6G5EPVNI • EpiMap Enhancers33536621 ChromHMM A549 Enhancer Show metadata Download track Track metadata identifier NGEPMG6G5EPVNI data_source EpiMap_Enhancers Download track Download number_of_intervals 130,307 bp_covered 99,744,000 output_type enhancer chromatin states genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,197,666 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00015_ENCODE_Enh_hg38.bed.gz processed_file_md5 ef51eb77073e4bf6c7253a8f9edb8d96 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00015_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00015_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00015_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00015_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00015_18_CALLS_segments.bed.gz raw_file_md5 2d07e1494277c02595f7bda18a3d58ba data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=A549 treated with 100 nM dexamethasone for 1 hour;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00015;extended_md.donor.ids=ENCDO000AAZ;extended_md.collated.donors=ENCDO000AAZ;extended_md.accession=ENCSR954SQX,ENCSR692JHM,ENCSR537FVU,ENCSR928FDN,ENCSR000ATO,ENCSR384KCZ,ENCSR139OYS,ENCSR000AST,ENCSR000ASU,ENCSR000AUG,ENCSR000AVF,ENCSR000AVG,ENCSR242TBH,ENCSR000AVH,ENCSR000AUJ;extended_md.biosample.ids=ENCBS772RGZ,ENCBS399VKP,ENCBS705AWL,ENCBS581KGX,ENCBS211HEU,ENCBS996ZFV,ENCBS542BDV,ENCBS706OMV,ENCBS774FRJ,ENCBS837CSI,ENCBS691ANI,ENCBS953UYS,ENCBS525GZL,ENCBS160AAA,ENCBS804CVK,ENCBS960LFK,ENCBS810BRT,ENCBS257YLQ,ENCBS606CKR,ENCBS889QXH,ENCBS887WBA,ENCBS017CJM,ENCBS598CCT,ENCBS417IIV;extended_md.assay=ChIP-seq,ATAC-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=58;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name EpiMap_Enhancers A549 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Adrenal gland NGEPMG6KJRCLDH • EpiMap Enhancers33536621 ChromHMM Adrenal gland Enhancer Show metadata Download track Track metadata identifier NGEPMG6KJRCLDH data_source EpiMap_Enhancers Download track Download number_of_intervals 64,656 bp_covered 48,966,200 output_type enhancer chromatin states genome_build hg38 cell_type Adrenal gland biosample_type Tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 618,350 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00050_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 dc0aec5a56edbc1df5d95f1d926e2071 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00050_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00050_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00050_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00050_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00050_18_CALLS_segments.bed.gz raw_file_md5 190306f1f4db991eab138b1277d4e462 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=adrenal gland female embryo (108 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00050;extended_md.donor.ids=ENCDO012PVK;extended_md.collated.donors=ENCDO012PVK;extended_md.accession=ENCSR419MZH;extended_md.biosample.ids=ENCBS119WRO;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=108;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Endocrine life_stage Embryonic track_name EpiMap_Enhancers Adrenal gland ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Trophoblast NGEPMG75TLT32O • EpiMap Enhancers33536621 ChromHMM Trophoblast Enhancer Show metadata Download track Track metadata identifier NGEPMG75TLT32O data_source EpiMap_Enhancers Download track Download number_of_intervals 231,812 bp_covered 176,438,800 output_type enhancer chromatin states genome_build hg38 cell_type Trophoblast biosample_type Tissue biosample_term_id UBERON:0000088 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 2,118,643 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01859_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 94c5c5bcd2b90b43e42f2eb7d1c08b6c wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01859_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01859_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01859_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01859_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01859_18_CALLS_segments.bed.gz raw_file_md5 6643ef9d929d4bcec7abcb1b3e82922a data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=trophoblast female embryo (20 weeks);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01859;extended_md.donor.ids=ENCDO865QOI;extended_md.collated.donors=ENCDO865QOI;extended_md.accession=ENCSR050SCZ,ENCSR612MZB,ENCSR221ZRM,ENCSR746MTU,ENCSR507SRD;extended_md.biosample.ids=ENCBS445FSM;extended_md.assay=ChIP-seq;extended_md.life.stage=embryonic;extended_md.age=20;extended_md.age.units=week;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name EpiMap_Enhancers Trophoblast ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Stomach NGEPMG7YPUJYLY • EpiMap33536621 ChromHMM Stomach Chromatin states Show metadata Download track Track metadata identifier NGEPMG7YPUJYLY data_source EpiMap Download track Download number_of_intervals 629,558 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Stomach biosample_type Tissue biosample_term_id UBERON:0000945 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 6,138,190 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01649_Roadmap_2015_All_hg38.bed.gz processed_file_md5 add9d6dbef93eb7bfd15e3ac7625bbac wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01649_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01649_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01649_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01649_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01649_18_CALLS_segments.bed.gz raw_file_md5 d3c745aaea6f50df508c196b351b3c64 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=stomach female embryo (96 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01649;extended_md.donor.ids=ENCDO613NXA,ENCDO870OBN,ENCDO188ZLA,ENCDO311CUL,ENCDO431WFV;extended_md.collated.donors=ENCDO870OBN,ENCDO188ZLA,ENCDO311CUL,ENCDO431WFV,ENCDO613NXA;extended_md.accession=ENCSR683YLO,ENCSR930YSB,ENCSR098YIU,ENCSR743DDX,ENCSR354IST,ENCSR447GWQ;extended_md.biosample.ids=ENCBS052EGS,ENCBS602TSC,ENCBS307IZJ,ENCBS341TGF,ENCBS385BJQ;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=embryonic;extended_md.age=96;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name EpiMap Stomach ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Sigmoid colon NGEPMGA7YJOPTC • EpiMap33536621 ChromHMM Sigmoid colon Chromatin states Show metadata Download track Track metadata identifier NGEPMGA7YJOPTC data_source EpiMap Download track Download number_of_intervals 265,208 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Sigmoid colon biosample_type Tissue biosample_term_id UBERON:0001159 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 2,583,950 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01547_ENCODE_All_hg38.bed.gz processed_file_md5 b8bf2c0249e60b1d4f6c56b53ded515e wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01547_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01547_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01547_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01547_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01547_18_CALLS_segments.bed.gz raw_file_md5 de1a6ff33a7b6e5f05206f71a6852718 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=sigmoid colon male adult (54 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01547;extended_md.donor.ids=ENCDO451RUA;extended_md.collated.donors=ENCDO451RUA;extended_md.accession=ENCSR391YAV,ENCSR086OGH;extended_md.biosample.ids=ENCBS402XYB,ENCBS345HRP;extended_md.assay=ATAC-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=54;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=UBERON:0001159;is_hg38_lifted=no system_category Digestive life_stage Adult track_name EpiMap Sigmoid colon ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Frontal cortex NGEPMGAQACSO2Y • EpiMap Enhancers33536621 ChromHMM Frontal cortex Enhancer Show metadata Download track Track metadata identifier NGEPMGAQACSO2Y data_source EpiMap_Enhancers Download track Download number_of_intervals 151,263 bp_covered 132,040,600 output_type enhancer chromatin states genome_build hg38 cell_type Frontal cortex biosample_type Tissue biosample_term_id UBERON:0001870 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,410,787 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00371_ENCODE_Enh_hg38.bed.gz processed_file_md5 2deb4770f5125b00e2e1a17659a469a5 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00371_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00371_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00371_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00371_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00371_18_CALLS_segments.bed.gz raw_file_md5 e1eb8493a96df04d25ecd30909245f72 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=frontal cortex male adult (27 years) and male adult (35 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00371;extended_md.donor.ids=ENCDO007AAA,ENCDO006AAA;extended_md.collated.donors=ENCDO007AAA,ENCDO006AAA;extended_md.accession=ENCSR000EIK;extended_md.biosample.ids=ENCBS156AAA,ENCBS155AAA;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=27,35;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=UBERON:0001870;is_hg38_lifted=no system_category Nervous life_stage Adult track_name EpiMap_Enhancers Frontal cortex ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Endothelial cell NGEPMGB24KEE5Y • EpiMap33536621 ChromHMM Endothelial cell Chromatin states Show metadata Download track Track metadata identifier NGEPMGB24KEE5Y data_source EpiMap Download track Download number_of_intervals 426,960 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,181,959 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01077_ENCODE_All_hg38.bed.gz processed_file_md5 500227100af9c8ab6cac27bed3107d0f wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01077_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01077_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01077_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01077_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01077_18_CALLS_segments.bed.gz raw_file_md5 d80087d54f9b8d7961509a9b2e7bc1a4 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=kidney capillary endothelial cell female embryo (113 days);tissue_of_origin=Kidney capillary;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01077;extended_md.donor.ids=ENCDO987XTQ;extended_md.collated.donors=ENCDO987XTQ;extended_md.accession=ENCSR988YKR;extended_md.biosample.ids=ENCBS294OHG;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=113;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap Endothelial cell ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Large intestine NGEPMGB4NE6KDP • EpiMap Enhancers33536621 ChromHMM Large intestine Enhancer Show metadata Download track Track metadata identifier NGEPMGB4NE6KDP data_source EpiMap_Enhancers Download track Download number_of_intervals 181,974 bp_covered 131,157,400 output_type enhancer chromatin states genome_build hg38 cell_type Large intestine biosample_type Tissue biosample_term_id UBERON:0000059 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,689,009 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01119_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 333f58dd68bf080068000bbaa0d6a99c wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01119_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01119_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01119_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01119_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01119_18_CALLS_segments.bed.gz raw_file_md5 e463e1345bcd15b0e8ce4051fe2a08d2 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=large intestine male embryo (108 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01119;extended_md.donor.ids=ENCDO132ASK,ENCDO119ASK;extended_md.collated.donors=ENCDO119ASK,ENCDO132ASK;extended_md.accession=ENCSR659RHV,ENCSR857AEB,ENCSR998ZWM,ENCSR530LYV,ENCSR413QXO,ENCSR157FDN,ENCSR591JZS;extended_md.biosample.ids=ENCBS547DHM,ENCBS802MPM;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=embryonic;extended_md.age=108;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name EpiMap_Enhancers Large intestine ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • RCC 7860 NGEPMGBAB6SOW6 • EpiMap33536621 ChromHMM RCC 7860 Chromatin states Show metadata Download track Track metadata identifier NGEPMGBAB6SOW6 data_source EpiMap Download track Download number_of_intervals 402,083 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type RCC 7860 biosample_type Cell line biosample_term_id EFO:0005707 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,928,920 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01474_ENCODE_All_hg38.bed.gz processed_file_md5 ab7c1b82e22c8b891254924afda538fb wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01474_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01474_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01474_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01474_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01474_18_CALLS_segments.bed.gz raw_file_md5 5a82ef7da78b178cd1ea06fb2cce9c84 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=RCC 7860;tissue_of_origin=Kidney;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01474;extended_md.donor.ids=ENCDO000ADK;extended_md.collated.donors=ENCDO000ADK;extended_md.accession=ENCSR037PGI;extended_md.biosample.ids=ENCBS807WMR,ENCBS413VCR;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=58;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0005707;is_hg38_lifted=no system_category Renal life_stage Adult track_name EpiMap RCC 7860 ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • A549 NGEPMGBUAZBNAJ • EpiMap33536621 ChromHMM A549 Chromatin states Show metadata Download track Track metadata identifier NGEPMGBUAZBNAJ data_source EpiMap Download track Download number_of_intervals 375,402 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,649,077 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00028_GGR_All_hg38.bed.gz processed_file_md5 f3744ff9d2e8b6434f4d13d46a7aa776 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00028_GGR_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00028_GGR_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00028_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00028_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00028_18_CALLS_segments.bed.gz raw_file_md5 f0b9051353012abe662ff586a589de15 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=A549 treated with 100 nM dexamethasone for 6 hours;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00028;extended_md.donor.ids=ENCDO000AAZ;extended_md.collated.donors=ENCDO000AAZ;extended_md.accession=ENCSR905REY,ENCSR340NAL,ENCSR868MLT,ENCSR077EYC,ENCSR032SCO,ENCSR646OPC;extended_md.biosample.ids=ENCBS503NHT,ENCBS431FWG,ENCBS712HYP,ENCBS859WOF,ENCBS306KID,ENCBS792THF,ENCBS658RMM,ENCBS194QRX,ENCBS485UNU,ENCBS183GJP,ENCBS370PMJ,ENCBS714IGN,ENCBS004RKE,ENCBS299XUO,ENCBS330OQB,ENCBS807RCH,ENCBS675TOV,ENCBS599ALV,ENCBS229QHJ;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=58;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name EpiMap A549 ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Common myeloid progenitor cell NGEPMGCTAEE2PG • EpiMap Enhancers33536621 ChromHMM Common myeloid progenitor cell Enhancer Show metadata Download track Track metadata identifier NGEPMGCTAEE2PG data_source EpiMap_Enhancers Download track Download number_of_intervals 177,892 bp_covered 127,080,600 output_type enhancer chromatin states genome_build hg38 cell_type Common myeloid progenitor cell biosample_type Primary cell biosample_term_id NCIT:C12552 tissue_category Umbilical Cord encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,649,278 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00239_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 698d62eafaa1d56abf4ba386c4673232 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00239_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00239_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00239_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00239_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00239_18_CALLS_segments.bed.gz raw_file_md5 7bf3574cde72f4b26758b31941e81f11 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=common myeloid progenitorCD34+ male adult (42 years);tissue_of_origin=Cord blood;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00239;extended_md.donor.ids=ENCDO459DTQ;extended_md.collated.donors=ENCDO459DTQ;extended_md.accession=ENCSR495INQ,ENCSR691CSS,ENCSR060YIB,ENCSR192GUR,ENCSR458PCE,ENCSR245ZCU;extended_md.biosample.ids=ENCBS410CRU;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=42;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Embryo life_stage Adult track_name EpiMap_Enhancers Common myeloid progenitor cell ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Ectodermal cell NGEPMGDHIFMN2I • EpiMap Enhancers33536621 ChromHMM Ectodermal cell Enhancer Show metadata Download track Track metadata identifier NGEPMGDHIFMN2I data_source EpiMap_Enhancers Download track Download number_of_intervals 135,100 bp_covered 94,735,800 output_type enhancer chromatin states genome_build hg38 cell_type Ectodermal cell biosample_type In vitro differentiated cells biosample_term_id CL:0000221 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,271,861 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00273_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 2d3860609308161578ca3f5b003b3223 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00273_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00273_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00273_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00273_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00273_18_CALLS_segments.bed.gz raw_file_md5 a46efc93f357a26aeaad3dc36344583d data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=ectodermal cell originated from HUES64;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00273;extended_md.donor.ids=ENCDO424FTP;extended_md.collated.donors=ENCDO424FTP;extended_md.accession=ENCSR747HAM,ENCSR366OIQ,ENCSR807LJO,ENCSR690GLT,ENCSR136ZLJ,ENCSR235CEI;extended_md.biosample.ids=ENCBS927LTG,ENCBS678KDE,ENCBS678KDE,ENCBS554MMO,ENCBS398HLX,ENCBS678KDE;extended_md.assay=ChIP-seq;extended_md.life.stage=embryonic;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=CL:0000221;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name EpiMap_Enhancers Ectodermal cell ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Lung NGEPMGDN4QPKSQ • EpiMap Enhancers33536621 ChromHMM Lung Enhancer Show metadata Download track Track metadata identifier NGEPMGDN4QPKSQ data_source EpiMap_Enhancers Download track Download number_of_intervals 127,108 bp_covered 88,505,000 output_type enhancer chromatin states genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,193,541 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01140_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 9b233a99541d8903582cb5728aad829f wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01140_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01140_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01140_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01140_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01140_18_CALLS_segments.bed.gz raw_file_md5 0d1d851937870557ee5f5eaefca79970 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=left lung female embryo (110 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01140;extended_md.donor.ids=ENCDO087TLK;extended_md.collated.donors=ENCDO087TLK;extended_md.accession=ENCSR960EJV;extended_md.biosample.ids=ENCBS647OUP;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=110;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Embryonic track_name EpiMap_Enhancers Lung ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Kidney NGEPMGEEYWTEND • EpiMap Enhancers33536621 ChromHMM Kidney Enhancer Show metadata Download track Track metadata identifier NGEPMGEEYWTEND data_source EpiMap_Enhancers Download track Download number_of_intervals 133,340 bp_covered 96,922,200 output_type enhancer chromatin states genome_build hg38 cell_type Kidney biosample_type Tissue biosample_term_id UBERON:0002113 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,245,689 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01517_ENCODE_Enh_hg38.bed.gz processed_file_md5 b713e3360ecee408bf5cb08f38073b1e wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01517_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01517_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01517_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01517_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01517_18_CALLS_segments.bed.gz raw_file_md5 384f21d7e78ad95eaee51409a81b6fd6 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=right kidney male embryo (91 day);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01517;extended_md.donor.ids=ENCDO245RIZ;extended_md.collated.donors=ENCDO245RIZ;extended_md.accession=ENCSR768OLL;extended_md.biosample.ids=ENCBS816VUN;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=91;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap_Enhancers Kidney ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]