consolidated • MCF-7 NGEPMGEIL62SYZ • EpiMap33536621 ChromHMM MCF-7 Chromatin states Show metadata Download track Track metadata identifier NGEPMGEIL62SYZ data_source EpiMap Download track Download number_of_intervals 461,159 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,513,653 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01244_ENCODE_All_hg38.bed.gz processed_file_md5 8b4e2eb411e2cceca939ac00066bafa2 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01244_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01244_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01244_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01244_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01244_18_CALLS_segments.bed.gz raw_file_md5 7aace704f1ceeb5f275c2ca334e3269f data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=MCF-7 genetically modified using RNAi;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01244;extended_md.donor.ids=ENCDO000AAE;extended_md.collated.donors=ENCDO000AAE;extended_md.accession=ENCSR000EKX;extended_md.biosample.ids=ENCBS094ENC;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=69;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap MCF-7 ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Omental fat pad NGEPMGF7J4ZKYX • EpiMap33536621 ChromHMM Omental fat pad Chromatin states Show metadata Download track Track metadata identifier NGEPMGF7J4ZKYX data_source EpiMap Download track Download number_of_intervals 272,786 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Omental fat pad biosample_type Tissue biosample_term_id UBERON:0010414 tissue_category Adipose encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 2,662,168 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01393_ENCODE_All_hg38.bed.gz processed_file_md5 948331dc4268bcf4c01d65e73b27d3bf wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01393_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01393_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01393_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01393_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01393_18_CALLS_segments.bed.gz raw_file_md5 1ffda09631ff65428f4b4385db292342 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=omental fat pad female adult (51 year);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01393;extended_md.donor.ids=ENCDO271OUW;extended_md.collated.donors=ENCDO271OUW;extended_md.accession=ENCSR244ZEJ,ENCSR788TRR;extended_md.biosample.ids=ENCBS971HUW,ENCBS023NGJ;extended_md.assay=ATAC-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=51;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=UBERON:0010414;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name EpiMap Omental fat pad ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Kidney NGEPMGFCJUX3DO • EpiMap Enhancers33536621 ChromHMM Kidney Enhancer Show metadata Download track Track metadata identifier NGEPMGFCJUX3DO data_source EpiMap_Enhancers Download track Download number_of_intervals 92,299 bp_covered 61,310,000 output_type enhancer chromatin states genome_build hg38 cell_type Kidney biosample_type Tissue biosample_term_id UBERON:0002113 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 878,694 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01132_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 559802a7b77b8d819ba40d4df864fcd1 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01132_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01132_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01132_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01132_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01132_18_CALLS_segments.bed.gz raw_file_md5 5251dfd8cd2d9f100b4e3a96f42063b4 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=left kidney female embryo (87 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01132;extended_md.donor.ids=ENCDO814BQX;extended_md.collated.donors=ENCDO814BQX;extended_md.accession=ENCSR295DUI;extended_md.biosample.ids=ENCBS657MPH;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=87;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap_Enhancers Kidney ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • HPDE6-E6E7 NGEPMGFN4MXNIV • EpiMap Enhancers33536621 ChromHMM HPDE6-E6E7 Enhancer Show metadata Download track Track metadata identifier NGEPMGFN4MXNIV data_source EpiMap_Enhancers Download track Download number_of_intervals 150,642 bp_covered 116,080,600 output_type enhancer chromatin states genome_build hg38 cell_type HPDE6-E6E7 biosample_type Cell line biosample_term_id EFO:0005711 tissue_category Pancreas encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,397,853 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00703_ENCODE_Enh_hg38.bed.gz processed_file_md5 20951cbc5e74a17f464db7d19698f3b4 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00703_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00703_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00703_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00703_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00703_18_CALLS_segments.bed.gz raw_file_md5 8b899de3fa591dd40e2e127f2c807520 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=HPDE6-E6E7;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00703;extended_md.donor.ids=ENCDO830PVG;extended_md.collated.donors=ENCDO830PVG;extended_md.accession=ENCSR000EJX;extended_md.biosample.ids=ENCBS224AAA;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=63;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0005711;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name EpiMap_Enhancers HPDE6-E6E7 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Renal pelvis NGEPMGFYFEHZ4L • EpiMap33536621 ChromHMM Renal pelvis Chromatin states Show metadata Download track Track metadata identifier NGEPMGFYFEHZ4L data_source EpiMap Download track Download number_of_intervals 352,592 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Renal pelvis biosample_type Tissue biosample_term_id UBERON:0001224 tissue_category Urinary encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,460,906 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01495_Roadmap_2021_All_hg38.bed.gz processed_file_md5 4ff684314a094cccd5ef78757651f03c wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01495_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01495_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01495_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01495_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01495_18_CALLS_segments.bed.gz raw_file_md5 1f8e03a43c4a04caa5d6ceabd758e97e data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=renal pelvis female embryo (89 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01495;extended_md.donor.ids=ENCDO076OLG;extended_md.collated.donors=ENCDO076OLG;extended_md.accession=ENCSR911YVV;extended_md.biosample.ids=ENCBS404JFE;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=89;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap Renal pelvis ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Fibroblast NGEPMGGI4NB4ZS • EpiMap33536621 ChromHMM Fibroblast Chromatin states Show metadata Download track Track metadata identifier NGEPMGGI4NB4ZS data_source EpiMap Download track Download number_of_intervals 503,301 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,897,446 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00346_Roadmap_2021_All_hg38.bed.gz processed_file_md5 a41256347f647be2edcd9560e1dc10cc wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00346_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00346_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00346_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00346_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00346_18_CALLS_segments.bed.gz raw_file_md5 5b5f027e30dd0063b9e6824989f26fa2 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=fibroblast of skin of abdomen male embryo (97 days);tissue_of_origin=Skin - abdomen;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00346;extended_md.donor.ids=ENCDO576LXR;extended_md.collated.donors=ENCDO576LXR;extended_md.accession=ENCSR176KYD,ENCSR622TWS;extended_md.biosample.ids=ENCBS405WVO,ENCBS599YIE;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=97;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Integumentary life_stage Embryonic track_name EpiMap Fibroblast ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • OCI-LY3 NGEPMGH6QVASAE • EpiMap Enhancers33536621 ChromHMM OCI-LY3 Enhancer Show metadata Download track Track metadata identifier NGEPMGH6QVASAE data_source EpiMap_Enhancers Download track Download number_of_intervals 152,751 bp_covered 100,813,000 output_type enhancer chromatin states genome_build hg38 cell_type OCI-LY3 biosample_type Cell line biosample_term_id EFO:0006710 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,412,401 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01390_ENCODE_Enh_hg38.bed.gz processed_file_md5 69828ab119892256e1172b6d97595793 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01390_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01390_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01390_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01390_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01390_18_CALLS_segments.bed.gz raw_file_md5 7bd1aa02f805dc38f8c8297281abc009 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=OCI-LY3;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01390;extended_md.donor.ids=ENCDO355AAA;extended_md.collated.donors=ENCDO355AAA;extended_md.accession=ENCSR548PZS,ENCSR604JFH,ENCSR581LZU,ENCSR957CQH,ENCSR638FRE,ENCSR996GHD,ENCSR629TDG,ENCSR701ZDB,ENCSR857GMX,ENCSR867TPP,ENCSR779KYW;extended_md.biosample.ids=ENCBS018GXW,ENCBS757GPD,ENCBS018GXW,ENCBS757GPD;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=52;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0006710;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap_Enhancers OCI-LY3 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Placental basal plate NGEPMGHMW4MIYK • EpiMap33536621 ChromHMM Placental basal plate Chromatin states Show metadata Download track Track metadata identifier NGEPMGHMW4MIYK data_source EpiMap Download track Download number_of_intervals 347,438 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Placental basal plate biosample_type Tissue biosample_term_id UBERON:8600019 tissue_category Placenta encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,347,742 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01448_Roadmap_2021_All_hg38.bed.gz processed_file_md5 98a00d180cb52a2c28d738f0a0a60714 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01448_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01448_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01448_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01448_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01448_18_CALLS_segments.bed.gz raw_file_md5 8be5e120436a42378a1e840cc0fc9b78 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=placental basal plate male embryo (38 weeks);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01448;extended_md.donor.ids=ENCDO974LFM;extended_md.collated.donors=ENCDO974LFM;extended_md.accession=ENCSR629RBC,ENCSR066GUY,ENCSR345QKG;extended_md.biosample.ids=ENCBS214OGS;extended_md.assay=ChIP-seq;extended_md.life.stage=embryonic;extended_md.age=38;extended_md.age.units=week;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=NTR:0003013;is_hg38_lifted=no system_category Placental life_stage Embryonic track_name EpiMap Placental basal plate ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Smooth muscle tissue NGEPMGHQZ3CM36 • EpiMap Enhancers33536621 ChromHMM Smooth muscle tissue Enhancer Show metadata Download track Track metadata identifier NGEPMGHQZ3CM36 data_source EpiMap_Enhancers Download track Download number_of_intervals 149,896 bp_covered 99,521,400 output_type enhancer chromatin states genome_build hg38 cell_type Smooth muscle tissue biosample_type Tissue biosample_term_id UBERON:0001135 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,402,102 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01659_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 11f385c93d9f171886452d842da671e1 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01659_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01659_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01659_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01659_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01659_18_CALLS_segments.bed.gz raw_file_md5 f4fae26bc9089c51a6eddc1ee09cf436 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=stomach smooth muscle female adult (84 years);tissue_of_origin=Stomach;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01659;extended_md.donor.ids=ENCDO724KBU;extended_md.collated.donors=ENCDO724KBU;extended_md.accession=ENCSR339PHE,ENCSR532FEO,ENCSR272GZG,ENCSR971ETA,ENCSR761AKF,ENCSR941WHT,ENCSR003WKF;extended_md.biosample.ids=ENCBS832JNE;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=84;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Adult track_name EpiMap_Enhancers Smooth muscle tissue ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Mesenchymal stem cell NGEPMGINTZNFDZ • EpiMap33536621 ChromHMM Mesenchymal stem cell Chromatin states Show metadata Download track Track metadata identifier NGEPMGINTZNFDZ data_source EpiMap Download track Download number_of_intervals 790,612 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Mesenchymal stem cell biosample_type Stem cell biosample_term_id CL:0000134 tissue_category Connective Tissue encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 7,686,493 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01260_Roadmap_2015_All_hg38.bed.gz processed_file_md5 dff71aa1760f06bca7c3f9d7ea89c0e6 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01260_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01260_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01260_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01260_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01260_18_CALLS_segments.bed.gz raw_file_md5 94928ebd7fd0bf6835c769910952e61f data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=mesenchymal stem cell originated from adipose tissue;tissue_of_origin=Connective Tissue;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01260;extended_md.donor.ids=ENCDO477HWZ,ENCDO608RNO,ENCDO535TMW,ENCDO535TMW,ENCDO608RNO,ENCDO477HWZ,ENCDO477HWZ,ENCDO608RNO;extended_md.collated.donors=ENCDO477HWZ,ENCDO535TMW,ENCDO608RNO,ENCDO608RNO,ENCDO477HWZ;extended_md.accession=ENCSR555QHZ,ENCSR006GPM,ENCSR004AKD,ENCSR262VXI,ENCSR196LEI,ENCSR439EHQ;extended_md.biosample.ids=ENCBS663GWU,ENCBS651YMI,ENCBS663GWU,ENCBS283AWZ,ENCBS283AWZ,ENCBS651YMI,ENCBS663GWU,ENCBS651YMI;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=59,41,59,unknown,59,unknown,unknown,41;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Skeletal life_stage Adult track_name EpiMap Mesenchymal stem cell ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Stomach NGEPMGIOJ3IGHE • EpiMap Enhancers33536621 ChromHMM Stomach Enhancer Show metadata Download track Track metadata identifier NGEPMGIOJ3IGHE data_source EpiMap_Enhancers Download track Download number_of_intervals 126,218 bp_covered 91,561,200 output_type enhancer chromatin states genome_build hg38 cell_type Stomach biosample_type Tissue biosample_term_id UBERON:0000945 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,180,916 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01647_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 aac5edd1961570106ef80afe33aa49bd wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01647_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01647_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01647_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01647_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01647_18_CALLS_segments.bed.gz raw_file_md5 d6852f3af9c6cae552587b8f3bbe6ef5 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=stomach female embryo (147 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01647;extended_md.donor.ids=ENCDO863JOG;extended_md.collated.donors=ENCDO863JOG;extended_md.accession=ENCSR627KFV;extended_md.biosample.ids=ENCBS109VNU;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=147;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name EpiMap_Enhancers Stomach ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Brain NGEPMGJ755BAYK • EpiMap33536621 ChromHMM Brain Chromatin states Show metadata Download track Track metadata identifier NGEPMGJ755BAYK data_source EpiMap Download track Download number_of_intervals 385,583 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Brain biosample_type Tissue biosample_term_id UBERON:0000955 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,783,767 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00142_ENCODE_All_hg38.bed.gz processed_file_md5 3766d841931a35238557c545a8329727 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00142_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00142_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00142_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00142_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00142_18_CALLS_segments.bed.gz raw_file_md5 5d4e366ee4bc4f368d197b7248e31819 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=brain male embryo (72 days) and male embryo (76 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00142;extended_md.donor.ids=ENCDO647EYG,ENCDO300THQ;extended_md.collated.donors=ENCDO647EYG,ENCDO300THQ;extended_md.accession=ENCSR475VQD;extended_md.biosample.ids=ENCBS980LUR,ENCBS489VFT;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=72,76;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Nervous life_stage Embryonic track_name EpiMap Brain ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Fibroblast NGEPMGJSNQXWX5 • EpiMap Enhancers33536621 ChromHMM Fibroblast Enhancer Show metadata Download track Track metadata identifier NGEPMGJSNQXWX5 data_source EpiMap_Enhancers Download track Download number_of_intervals 155,861 bp_covered 105,230,400 output_type enhancer chromatin states genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,444,580 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00344_ENCODE_Enh_hg38.bed.gz processed_file_md5 32b3b7b41976f1bc046a1ae29444fe3a wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00344_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00344_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00344_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00344_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00344_18_CALLS_segments.bed.gz raw_file_md5 049cad34f6e1e75b088275d3f35dc9b5 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=fibroblast of peridontal ligament male;tissue_of_origin=Peridontal ligament;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00344;extended_md.donor.ids=ENCDO247AAA;extended_md.collated.donors=ENCDO247AAA;extended_md.accession=ENCSR000EOI;extended_md.biosample.ids=ENCBS046DOQ,ENCBS322AAA;extended_md.assay=DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Unknown track_name EpiMap_Enhancers Fibroblast ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]
consolidated • Adrenal gland NGEPMGJXCJ2ZS2 • EpiMap33536621 ChromHMM Adrenal gland Chromatin states Show metadata Download track Track metadata identifier NGEPMGJXCJ2ZS2 data_source EpiMap Download track Download number_of_intervals 457,184 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Adrenal gland biosample_type Tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,408,842 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00046_Roadmap_2021_All_hg38.bed.gz processed_file_md5 4d2311e5491048b19da80298c132deb6 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00046_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00046_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00046_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00046_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00046_18_CALLS_segments.bed.gz raw_file_md5 7d491e6c108264e3fa127933f0959456 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=adrenal gland female adult (30 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00046;extended_md.donor.ids=ENCDO424HVB;extended_md.collated.donors=ENCDO424HVB;extended_md.accession=ENCSR642HHF,ENCSR333ZAR,ENCSR899MFS,ENCSR425NQT;extended_md.biosample.ids=ENCBS428BRH;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=30;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name EpiMap Adrenal gland ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Lung NGEPMGK3AWEW2N • EpiMap Enhancers33536621 ChromHMM Lung Enhancer Show metadata Download track Track metadata identifier NGEPMGK3AWEW2N data_source EpiMap_Enhancers Download track Download number_of_intervals 79,268 bp_covered 86,562,000 output_type enhancer chromatin states genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 746,649 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01871_ENCODE_Enh_hg38.bed.gz processed_file_md5 afcc305e8c5a5c1ba5b26eb81dca282a wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01871_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01871_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01871_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01871_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01871_18_CALLS_segments.bed.gz raw_file_md5 6f9c8a5026729179fb9eeca21ab38fc0 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=upper lobe of left lung male adult (37 years);tissue_of_origin=Upper lobe;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01871;extended_md.donor.ids=ENCDO845WKR;extended_md.collated.donors=ENCDO845WKR;extended_md.accession=ENCSR164WOF;extended_md.biosample.ids=ENCBS974IWX;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=37;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name EpiMap_Enhancers Lung ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Pancreas NGEPMGKKN7FS2I • EpiMap Enhancers33536621 ChromHMM Pancreas Enhancer Show metadata Download track Track metadata identifier NGEPMGKKN7FS2I data_source EpiMap_Enhancers Download track Download number_of_intervals 68,238 bp_covered 49,145,600 output_type enhancer chromatin states genome_build hg38 cell_type Pancreas biosample_type Tissue biosample_term_id UBERON:0001264 tissue_category Pancreas encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 656,667 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00282_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 7f5405a30df3fc6d67bcf741e3affe7f wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00282_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00282_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00282_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00282_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00282_18_CALLS_segments.bed.gz raw_file_md5 34a206a53c2efc197d26b0f7b4c415c5 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=endocrine pancreas male;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00282;extended_md.donor.ids=ENCDO633LOT;extended_md.collated.donors=ENCDO633LOT;extended_md.accession=ENCSR849NQE;extended_md.biosample.ids=ENCBS776NCD;extended_md.assay=ChIP-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Endocrine life_stage Unknown track_name EpiMap_Enhancers Pancreas ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]
consolidated • Mesenchymal stem cell NGEPMGNKAHM3JN • EpiMap Enhancers33536621 ChromHMM Mesenchymal stem cell Enhancer Show metadata Download track Track metadata identifier NGEPMGNKAHM3JN data_source EpiMap_Enhancers Download track Download number_of_intervals 259,963 bp_covered 197,196,600 output_type enhancer chromatin states genome_build hg38 cell_type Mesenchymal stem cell biosample_type Stem cell biosample_term_id CL:0000134 tissue_category Connective Tissue encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 2,376,026 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01260_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 006b1fe502766d077b671f3aa45e0691 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01260_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01260_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01260_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01260_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01260_18_CALLS_segments.bed.gz raw_file_md5 dc81393465c2522e5cdf49fd360678f6 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=mesenchymal stem cell originated from adipose tissue;tissue_of_origin=Connective Tissue;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01260;extended_md.donor.ids=ENCDO477HWZ,ENCDO608RNO,ENCDO535TMW,ENCDO535TMW,ENCDO608RNO,ENCDO477HWZ,ENCDO477HWZ,ENCDO608RNO;extended_md.collated.donors=ENCDO477HWZ,ENCDO535TMW,ENCDO608RNO,ENCDO608RNO,ENCDO477HWZ;extended_md.accession=ENCSR555QHZ,ENCSR006GPM,ENCSR004AKD,ENCSR262VXI,ENCSR196LEI,ENCSR439EHQ;extended_md.biosample.ids=ENCBS663GWU,ENCBS651YMI,ENCBS663GWU,ENCBS283AWZ,ENCBS283AWZ,ENCBS651YMI,ENCBS663GWU,ENCBS651YMI;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=59,41,59,unknown,59,unknown,unknown,41;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Skeletal life_stage Adult track_name EpiMap_Enhancers Mesenchymal stem cell ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Transverse colon NGEPMGOB3O3V23 • EpiMap Enhancers33536621 ChromHMM Transverse colon Enhancer Show metadata Download track Track metadata identifier NGEPMGOB3O3V23 data_source EpiMap_Enhancers Download track Download number_of_intervals 60,773 bp_covered 52,193,000 output_type enhancer chromatin states genome_build hg38 cell_type Transverse colon biosample_type Tissue biosample_term_id UBERON:0001157 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 572,336 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01848_ENCODE_Enh_hg38.bed.gz processed_file_md5 80dc8a0207b9f010ae459d142090d3ba wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01848_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01848_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01848_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01848_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01848_18_CALLS_segments.bed.gz raw_file_md5 e191a94980b1674e03b68f1c34acf404 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=transverse colon female adult (51 year);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01848;extended_md.donor.ids=ENCDO271OUW;extended_md.collated.donors=ENCDO271OUW;extended_md.accession=ENCSR760QZM,ENCSR386HAZ;extended_md.biosample.ids=ENCBS360EPF,ENCBS232VCE;extended_md.assay=ATAC-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=51;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Adult track_name EpiMap_Enhancers Transverse colon ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Muscle NGEPMGOFWB2IVB • EpiMap33536621 ChromHMM Muscle Chromatin states Show metadata Download track Track metadata identifier NGEPMGOFWB2IVB data_source EpiMap Download track Download number_of_intervals 387,198 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Muscle biosample_type Tissue biosample_term_id NCIT:C13056 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,792,363 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01303_Roadmap_2021_All_hg38.bed.gz processed_file_md5 b230ef136a1ae4872b6712daddc30b50 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01303_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01303_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01303_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01303_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01303_18_CALLS_segments.bed.gz raw_file_md5 44301a539462504aafd4a1f84d545164 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=muscle of arm male embryo (96 days);tissue_of_origin=Arm;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01303;extended_md.donor.ids=ENCDO220PYT,ENCDO817EKT;extended_md.collated.donors=ENCDO817EKT,ENCDO220PYT;extended_md.accession=ENCSR303YII,ENCSR888GBS;extended_md.biosample.ids=ENCBS892WJE,ENCBS655AMM;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=96;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Embryonic track_name EpiMap Muscle ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • iPS-18c NGEPMGOUIXKP2E • EpiMap33536621 ChromHMM iPS-18c Chromatin states Show metadata Download track Track metadata identifier NGEPMGOUIXKP2E data_source EpiMap Download track Download number_of_intervals 422,269 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type iPS-18c biosample_type Cell line biosample_term_id EFO:0007107 tissue_category iPSC encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,129,003 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00738_Roadmap_2015_All_hg38.bed.gz processed_file_md5 3eec4944d35b9fadd05f091510c90460 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00738_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00738_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00738_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00738_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00738_18_CALLS_segments.bed.gz raw_file_md5 114f3c07951788ac73c2972ed04c4b78 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=iPS-18c;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00738;extended_md.donor.ids=ENCDO844VGJ;extended_md.collated.donors=ENCDO844VGJ;extended_md.accession=ENCSR792NZO,ENCSR034LMV;extended_md.biosample.ids=ENCBS841ZKV,ENCBS954GPE,ENCBS391PLF;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=48;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0007107;is_hg38_lifted=no system_category Stem Cell life_stage Adult track_name EpiMap iPS-18c ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]