H1-hESC NGADBVGIJH2DHU • ATACdb v1.03 ATAC-seq H1-hESC TFBS Show metadata identifier NGADBVGIJH2DHU data_source ATACdb_v1.03 Download track Download number_of_intervals 337,542 bp_covered 4,564,162 output_type transcription factor binding sites genome_build hg38 cell_type H1-hESC biosample_type Cell line biosample_term_id EFO:0003042 tissue_category Stem Cell encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 11,055,159 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0383_hg38_motif_binding_sites.bed.gz processed_file_md5 40a405f1df3a30b136910a8e80f607f9 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0383_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0383_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0383;Biosample_Type=Cell Line;Tissue_Type=Embryo;Biosample_Name=H1;Cancer_Type=Normal;Region_Number=67209;Length=48135.723 kb;GEO_SRA=SRR4045903;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FI system_category Stem Cell life_stage Embryonic track_name ATACdb_v1.03 H1-hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic] [TFBS]
Naive Tregs NGADBVGJPIWZD4 • ATACdb v1.03 ATAC-seq Naive Tregs TFBS Show metadata identifier NGADBVGJPIWZD4 data_source ATACdb_v1.03 Download track Download number_of_intervals 167,857 bp_covered 2,253,013 output_type transcription factor binding sites genome_build hg38 cell_type Naive Tregs biosample_type Not applicable biosample_term_id CL:0002677 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 5,249,483 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0361_hg38_motif_binding_sites.bed.gz processed_file_md5 6695e8036d40a820acad7782320c14ad wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0361_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0361_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0361;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Naive_Tregs;Cancer_Type=Normal;Region_Number=29323;Length=19149.313 kb;GEO_SRA=SRR7650920;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Naive Tregs ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Cardiac myocyte NGADBVHBEDL57M • ATACdb v1.03 ATAC-seq Cardiac myocyte TFBS Show metadata identifier NGADBVHBEDL57M data_source ATACdb_v1.03 Download track Download number_of_intervals 268,904 bp_covered 3,629,722 output_type transcription factor binding sites genome_build hg38 cell_type Cardiac myocyte biosample_type Cell line biosample_term_id CL:0000746 tissue_category Stem Cell encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 9,122,084 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0380_hg38_motif_binding_sites.bed.gz processed_file_md5 69d3f2a13578fa0f281998ecb0228f0a wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0380_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0380_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0380;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=C15;Cancer_Type=Normal;Region_Number=98557;Length=28491.987 kb;GEO_SRA=SRR4045886;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FI system_category Stem Cell life_stage Unknown track_name ATACdb_v1.03 Cardiac myocyte ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Induced pluripotent stem cell NGADBVHONFGXYA • ATACdb v1.03 ATAC-seq Induced pluripotent stem cell TFBS Show metadata identifier NGADBVHONFGXYA data_source ATACdb_v1.03 Download track Download number_of_intervals 193,298 bp_covered 2,631,082 output_type transcription factor binding sites genome_build hg38 cell_type Induced pluripotent stem cell biosample_type Stem cell biosample_term_id EFO:0004905 tissue_category iPSC encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 6,893,271 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0782_hg38_motif_binding_sites.bed.gz processed_file_md5 fe076a0e73637e2664b8ce31c818a584 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0782_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0782_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0782;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA19204;Cancer_Type=Other;Region_Number=70471;Length=31310.607 kb;GEO_SRA=SRR6412416;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/ system_category Stem Cell life_stage Unknown track_name ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
EBV-transformed lymphocytes NGADBVHTKAMUNL • ATACdb v1.03 ATAC-seq EBV-transformed lymphocytes TFBS Show metadata identifier NGADBVHTKAMUNL data_source ATACdb_v1.03 Download track Download number_of_intervals 28,454 bp_covered 386,539 output_type transcription factor binding sites genome_build hg38 cell_type EBV-transformed lymphocytes biosample_type Induced pluripotent stem cell line biosample_term_id EFO:0022546 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 1,021,634 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0751_hg38_motif_binding_sites.bed.gz processed_file_md5 062f64583bbf3caf06c99a9368281e9d wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0751_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0751_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0751;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Blood;Biosample_Name=LCL;Cancer_Type=Other;Region_Number=11086;Length=3296.019 kb;GEO_SRA=SRR6412829;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.l system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 EBV-transformed lymphocytes ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Memory effector T cell NGADBVI7HIDTYL • ATACdb v1.03 ATAC-seq Memory effector T cell Accessible chromatin Show metadata identifier NGADBVI7HIDTYL data_source ATACdb_v1.03 Download track Download number_of_intervals 39,210 bp_covered 25,537,918 output_type accessible chromatin region genome_build hg38 cell_type Memory effector T cell biosample_type Not applicable biosample_term_id CL:0000813 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,345,710 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0219_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 338b6c7703aeee3cecf7f4aa6b9df073 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0219_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0219_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0219.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0219.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 195ed9cec18bfc11c8bcbff8fdec3751 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0219;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Memory_Teffs;Cancer_Type=Normal;Region_Number=39295;Length=25595.766 kb;GEO_SRA=SRR7650749;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GA system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Memory effector T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
BJ NGADBVINPFO6FE • ATACdb v1.03 ATAC-seq BJ Accessible chromatin Show metadata identifier NGADBVINPFO6FE data_source ATACdb_v1.03 Download track Download number_of_intervals 69,097 bp_covered 43,654,855 output_type accessible chromatin region genome_build hg38 cell_type BJ biosample_type Cell line biosample_term_id EFO:0002779 tissue_category Connective Tissue encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 2,313,292 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1091_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 39a4f4e03a806c300f511e7ac79d39fd wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1091_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1091_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1091.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1091.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 ca0e2d0389d24b06ea943c042e1dc85e data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1091;Biosample_Type=Cell Line;Tissue_Type=Skin;Biosample_Name=BJ;Cancer_Type=Normal;Region_Number=69157;Length=43706.711 kb;GEO_SRA=GSM2174878;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILE system_category Skeletal life_stage Unknown track_name ATACdb_v1.03 BJ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Adipose NGADBVINSFXFIO • ATACdb v1.03 ATAC-seq Adipose TFBS Show metadata identifier NGADBVINSFXFIO data_source ATACdb_v1.03 Download track Download number_of_intervals 177,313 bp_covered 2,416,990 output_type transcription factor binding sites genome_build hg38 cell_type Adipose biosample_type Tissue biosample_term_id NCIT:C12472 tissue_category Adipose encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 6,483,857 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0398_hg38_motif_binding_sites.bed.gz processed_file_md5 7059a79a700c4ca12fd8d49ab2c81b8d wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0398_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0398_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0398;Biosample_Type=Tissue;Tissue_Type=Adipose;Biosample_Name=Adipose;Cancer_Type=Normal;Region_Number=75744;Length=27604.401 kb;GEO_SRA=SRR7690519;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB system_category Integumentary life_stage Unknown track_name ATACdb_v1.03 Adipose ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
WM989 NGADBVIUZOZJWE • ATACdb v1.03 ATAC-seq WM989 TFBS Show metadata identifier NGADBVIUZOZJWE data_source ATACdb_v1.03 Download track Download number_of_intervals 146,104 bp_covered 1,978,936 output_type transcription factor binding sites genome_build hg38 cell_type WM989 biosample_type Cell line biosample_term_id Not available tissue_category Skin encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 5,212,996 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1059_hg38_motif_binding_sites.bed.gz processed_file_md5 837bf87613e9799be079942b3dc58bc2 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1059_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1059_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1059;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=WM989;Cancer_Type=Melanoma;Region_Number=59178;Length=23815.151 kb;GEO_SRA=SRR5444794;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system_category Integumentary life_stage Unknown track_name ATACdb_v1.03 WM989 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
J-Lat A72 NGADBVJ2UB5PFJ • ATACdb v1.03 ATAC-seq J-Lat A72 Accessible chromatin Show metadata identifier NGADBVJ2UB5PFJ data_source ATACdb_v1.03 Download track Download number_of_intervals 20,254 bp_covered 7,425,655 output_type accessible chromatin region genome_build hg38 cell_type J-Lat A72 biosample_type Cell line biosample_term_id Not available tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 645,836 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0942_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 f2c68a209811f97fa1434e2203053fc1 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0942_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0942_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0942.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0942.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 2baaa8a88ba4caa3fcda36361ea9e5fc data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0942;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=J-Lat-A72;Cancer_Type=HIV-1;Region_Number=20340;Length=7266.715 kb;GEO_SRA=SRR5720371;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 J-Lat A72 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Stem cell NGADBVJIECEBLA • ATACdb v1.03 ATAC-seq Stem cell TFBS Show metadata identifier NGADBVJIECEBLA data_source ATACdb_v1.03 Download track Download number_of_intervals 58,738 bp_covered 855,121 output_type transcription factor binding sites genome_build hg38 cell_type Stem cell biosample_type Stem cell biosample_term_id CL:0000034 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 1,884,682 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1002_hg38_motif_binding_sites.bed.gz processed_file_md5 2061e0bed5c55dfa10c13d54ebe22e25 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1002_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1002_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1002;Biosample_Type=Stem Cell;Tissue_Type=Blood;Biosample_Name=Stem Cell;Cancer_Type=Normal;Region_Number=33320;Length=12095.694 kb;GEO_SRA=SRR5489431;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/G system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
FL3 NGADBVKCHWBJGT • ATACdb v1.03 ATAC-seq FL3 Accessible chromatin Show metadata identifier NGADBVKCHWBJGT data_source ATACdb_v1.03 Download track Download number_of_intervals 49,030 bp_covered 19,013,505 output_type accessible chromatin region genome_build hg38 cell_type FL3 biosample_type Cell line biosample_term_id Not available tissue_category Skin encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,576,308 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1143_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 49a968dd4177edb86211297544abbdd3 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1143_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1143_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1143.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1143.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 eed42351650e52e72c4ea190e61da655 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1143;Biosample_Type=Cell Line;Tissue_Type=Fibroblast;Biosample_Name=FL3;Cancer_Type=Other;Region_Number=49089;Length=19049.012 kb;GEO_SRA=SRR3066444;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system_category Integumentary life_stage Unknown track_name ATACdb_v1.03 FL3 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
T-helper 17 cell NGADBVKEWBEIEQ • ATACdb v1.03 ATAC-seq T-helper 17 cell TFBS Show metadata identifier NGADBVKEWBEIEQ data_source ATACdb_v1.03 Download track Download number_of_intervals 233,047 bp_covered 3,181,082 output_type transcription factor binding sites genome_build hg38 cell_type T-helper 17 cell biosample_type Not applicable biosample_term_id CL:0000899 tissue_category Immune encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 8,068,183 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0272_hg38_motif_binding_sites.bed.gz processed_file_md5 fc48cf0ca9cfeb531f6510d8a0c0e4df wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0272_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0272_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0272;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Th17;Cancer_Type=Normal;Region_Number=64668;Length=34847.443 kb;GEO_SRA=SRR7650803;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER system_category Lymphatic life_stage Unknown track_name ATACdb_v1.03 T-helper 17 cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
PC-9 NGADBVKFSKM5OT • ATACdb v1.03 ATAC-seq PC-9 Accessible chromatin Show metadata identifier NGADBVKFSKM5OT data_source ATACdb_v1.03 Download track Download number_of_intervals 34,020 bp_covered 13,835,116 output_type accessible chromatin region genome_build hg38 cell_type PC-9 biosample_type Cell line biosample_term_id EFO:0002847 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,097,870 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0987_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 a0ee4e0b2919253a2c5643b1cd9c5976 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0987_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0987_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0987.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0987.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 138de684d0a6ddec5a870f92c459dae0 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0987;Biosample_Type=Cell Line;Tissue_Type=Lung;Biosample_Name=PC-9;Cancer_Type=Lung cancer;Region_Number=34068;Length=13877.702 kb;GEO_SRA=SRR5800667;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GA system_category Respiratory life_stage Unknown track_name ATACdb_v1.03 PC-9 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Jurkat NGADBVKJYVPY44 • ATACdb v1.03 ATAC-seq Jurkat Accessible chromatin Show metadata identifier NGADBVKJYVPY44 data_source ATACdb_v1.03 Download track Download number_of_intervals 43,235 bp_covered 29,881,203 output_type accessible chromatin region genome_build hg38 cell_type Jurkat biosample_type Cell line biosample_term_id EFO:0002796 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,442,336 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0884_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 136535624a8612dd797b34cee0211c54 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0884_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0884_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0884.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0884.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 e999e8bb25d31305283477fb605cc142 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0884;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=Jurkat;Cancer_Type=Leukemia;Region_Number=43310;Length=29867.127 kb;GEO_SRA=SRR5063985;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GA system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Jurkat ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
CD4+ NGADBVKNPUYTXU • ATACdb v1.03 ATAC-seq CD4+ TFBS Show metadata identifier NGADBVKNPUYTXU data_source ATACdb_v1.03 Download track Download number_of_intervals 54,769 bp_covered 726,146 output_type transcription factor binding sites genome_build hg38 cell_type CD4+ biosample_type Primary cell biosample_term_id CL:0000492 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 1,741,468 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1319_hg38_motif_binding_sites.bed.gz processed_file_md5 3e90f1a831b5956f3e6b1f2bad3cd9fb wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1319_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1319_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1319;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Normal;Region_Number=13005;Length=4841.033 kb;GEO_SRA=SRR891277;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.or system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 CD4+ ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
B cell NGADBVKQNKC56H • ATACdb v1.03 ATAC-seq B cell Accessible chromatin Show metadata identifier NGADBVKQNKC56H data_source ATACdb_v1.03 Download track Download number_of_intervals 25,341 bp_covered 16,130,561 output_type accessible chromatin region genome_build hg38 cell_type B cell biosample_type Not applicable biosample_term_id CL:0000236 tissue_category Immune encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 852,794 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1493_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 61fdcd976307954d047e53bd015f054c wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1493_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1493_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1493.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1493.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 b81943b6c3289bbd3f47794a0b61738c data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1493;Biosample_Type=Other;Tissue_Type=Other;Biosample_Name=B cell;Cancer_Type=Normal;Region_Number=25388;Length=16160.694 kb;GEO_SRA=SRR3158179;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FIL system_category Lymphatic life_stage Unknown track_name ATACdb_v1.03 B cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Monocyte NGADBVLRR7ETYV • ATACdb v1.03 ATAC-seq Monocyte TFBS Show metadata identifier NGADBVLRR7ETYV data_source ATACdb_v1.03 Download track Download number_of_intervals 38,959 bp_covered 515,601 output_type transcription factor binding sites genome_build hg38 cell_type Monocyte biosample_type Not applicable biosample_term_id CL:0000576 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 1,228,450 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1469_hg38_motif_binding_sites.bed.gz processed_file_md5 7f0ac80e859dae760e764601bf39ea43 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1469_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1469_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1469;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Monocyte;Cancer_Type=Other;Region_Number=8042;Length=4396.307 kb;GEO_SRA=SRR4269920;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILE system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Monocyte ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
T regulatory cell NGADBVLYASZV6O • ATACdb v1.03 ATAC-seq T regulatory cell Accessible chromatin Show metadata identifier NGADBVLYASZV6O data_source ATACdb_v1.03 Download track Download number_of_intervals 12,932 bp_covered 5,177,370 output_type accessible chromatin region genome_build hg38 cell_type T regulatory cell biosample_type Primary cell biosample_term_id CL:0000815 tissue_category Immune encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 427,549 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0918_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 c692cbf6f8cf60a5dc25d8f41a05dda1 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0918_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0918_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0918.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0918.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 4dcdefbfca84aa406101dd0fd5195626 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0918;Biosample_Type=Primary Cell;Tissue_Type=Other;Biosample_Name=Treg cell;Cancer_Type=Other;Region_Number=12972;Length=5188.368 kb;GEO_SRA=SRR5831528;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/ system_category Lymphatic life_stage Unknown track_name ATACdb_v1.03 T regulatory cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Induced pluripotent stem cell NGADBVLYSRCKUQ • ATACdb v1.03 ATAC-seq Induced pluripotent stem cell TFBS Show metadata identifier NGADBVLYSRCKUQ data_source ATACdb_v1.03 Download track Download number_of_intervals 193,018 bp_covered 2,616,836 output_type transcription factor binding sites genome_build hg38 cell_type Induced pluripotent stem cell biosample_type Stem cell biosample_term_id EFO:0004905 tissue_category iPSC encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 6,572,251 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0818_hg38_motif_binding_sites.bed.gz processed_file_md5 64878f1f7b2c84d56dbca45bdcbf7653 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0818_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0818_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0818;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA18502;Cancer_Type=Other;Region_Number=59756;Length=26580.779 kb;GEO_SRA=SRR6412461;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/ system_category Stem Cell life_stage Unknown track_name ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]